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Report for CCDS15210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15210.1 Public Mus musculus 1 Kdsr 23 108 98 CCDS HistoryNCBI Gene:70750Re-query CCDS DB by CCDS ID:15210.1Re-query CCDS DB by GeneID:70750See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010049.5 ENSMUSP00000010049.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010049.5Link to Ensembl Protein Viewer:ENSMUSP00000010049.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000010049Re-query CCDS DB by Protein ID:ENSMUSP00000010049
Original member Current member NCBI NM_027534.2 NP_081810.1 Accepted alive Link to Nucleotide Sequence:NM_027534.2Link to Protein Sequence:NP_081810.1Re-query CCDS DB by Nucleotide ID:NM_027534Re-query CCDS DB by Protein ID:NP_081810Link to BLAST:NP_081810.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081810.1 332 Q6GV12 332 100% 0 0

Chromosomal Locations for CCDS 15210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 106724902 106725021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106727629 106727730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106734547 106734630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106739331 106739414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106743669 106743860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106747488 106747583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106747771 106747836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106753212 106753268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106755444 106755533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106759544 106759651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGTTGCTGTTGGCCGCTGCCGGCCTCGTGGCCTTCGTGCTGCTCCTCTACATGGTGTCGCCGCTCATCA
GTCCCAAGCCCCTCGCGCTGCCCGGCGCGCACGTAGTGGTCACAGGAGGCTCCAGTGGCATTGGGAAGTG
CATTGCTATTGAGTGCTACAAACAAGGAGCATTTATAACTCTGGTTGCACGAAATGAGGACAAGCTACTG
CAGGCGAAGAAAGACATTGAAAAGCACTCTATTAATGACAAACAGGTGGTGCTGTGTATCTCAGTTGATG
TGTCTCAAGACTATAACCAAGTGGAGAATGTCATAAAGCAGGCACAAGAGAAGCTGGGTCCTGTGGACAT
GCTGGTCAACTGTGCAGGCACCTCTATGTCAGGAAAGTTTGAAGAGCTTGAAGTTAGTAGTTTTGAGAAA
TTAATGAGCATAAATTACCTGGGCAGCGTGTACCCCAGCAGGGCAGTAATCACTACCATGAAGGAGCGAC
GGGTGGGCAGGATCGTGTTTGTGTCCTCTCAGGCAGGACAGCTGGGACTGTTTGGTTTCACGGCCTACTC
TTCATCCAAGTTTGCCATAAGAGGATTGGCAGAAGCTCTGCAGATGGAGGTGAAGCCGTACAATGTGTAC
GTCACTGTGGCCTACCCACCAGACACCGACACGCCGGGGCTGGCTGAGGAAAACAAAACGAAGCCCCTGG
AGACCCGGCTTATCTCAGAGACCACAGCTATTTGCAAACCAGAGCAGGTGGCCAAACAAATTGTCAAAGA
TGCCATACAAGGAAATTTTAACAGTTCTATTGGCTCAGATGGGTACATGCTGTCCTCCCTGACCTGTGGG
ATGGCCCCGGTGACTTCCATCACTGAAGGACTCCAGCAGGTGGTCACCATGGGCCTTTTCCGAACAATTG
CCTTGTTTTACCTTGGAAGTTTCGATAATATAGTTCGCCGCTGCATGGTGCAGAAAGCAAAACCTGAAGT
TGTAGACAAAACTGCCTAA

Translation (332 aa):
MLLLAAAGLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLL
QAKKDIEKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVSSFEK
LMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVY
VTVAYPPDTDTPGLAEENKTKPLETRLISETTAICKPEQVAKQIVKDAIQGNFNSSIGSDGYMLSSLTCG
MAPVTSITEGLQQVVTMGLFRTIALFYLGSFDNIVRRCMVQKAKPEVVDKTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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