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Pr012820243

Eukaryota (3 taxa) STS probe D6S1686 for cancer susceptibility candidate 15 (non-protein coding) (CASC15) and 7 more genes

Synopsis

Field NameValues
NameD6S1686
AliasesA045XH1; AFMa045xh1; HSA045XH1; RH13086; RH42618; W2904; stSG6481
TypeSTS
Application
Source organism
Source sequence
Target organismsCricetulus griseus; Pan troglodytes; Homo sapiens
Target genesNegr1 (Cricetulus griseus); CASC15 (Homo sapiens); FLJ12803 (Homo sapiens); LOC645330 (Homo sapiens); LOC650445 (Homo sapiens); LOC650449 (Homo sapiens); LOC650456 (Homo sapiens); LOC747852 (Pan troglodytes)

Sequences

>Probe|12820243|PRIMERF Forward PCR primer (outermost) (16b)
TGGCAAGCCACTTTCA
>Probe|12820243|PRIMERR Reverse PCR primer (outermost) (18b)
CACTGGGTGCTAGGAATG

References

1.

Comprehensive human genetic maps: individual and sex-specific variation in recombination.

Broman KW, Murray JC, Sheffield VC, White RL, Weber JL.

Am J Hum Genet. 1998 Sep;63(3):861-9.

2.

A comprehensive genetic map of the human genome based on 5,264 microsatellites.

Dib C, Fauré S, Fizames C, Samson D, Drouot N, Vignal A, Millasseau P, Marc S, Hazan J, Seboun E, Lathrop M, Gyapay G, Morissette J, Weissenbach J.

Nature. 1996 Mar 14;380(6570):152-4.

Show All 4 References...

3.

A fast and scalable radiation hybrid map construction and integration strategy.

Agarwala R, Applegate DL, Maglott D, Schuler GD, Schäffer AA.

Genome Res. 2000 Mar;10(3):350-64.

4.

A physical map of 30,000 human genes.

Deloukas P, Schuler GD, Gyapay G, Beasley EM, Soderlund C, Rodriguez-Tomé P, Hui L, Matise TC, McKusick KB, Beckmann JS, Bentolila S, Bihoreau M, Birren BB, Browne J, Butler A, Castle AB, Chiannilkulchai N, Clee C, Day PJ, Dehejia A, Dibling T, Drouot N, Duprat S, Fizames C, Fox S, Gelling S, Green L, Harrison P, Hocking R, Holloway E, Hunt S, Keil S, Lijnzaad P, Louis-Dit-Sully C, Ma J, Mendis A, Miller J, Morissette J, Muselet D, Nusbaum HC, Peck A, Rozen S, Simon D, Slonim DK, Staples R, Stein LD, Stewart EA, Suchard MA, Thangarajah T, Vega-Czarny N, Webber C, Wu X, Hudson J, Auffray C, Nomura N, Sikela JM, Polymeropoulos MH, James MR, Lander ES, Hudson TJ, Myers RM, Cox DR, Weissenbach J, Boguski MS, Bentley DR.

Science. 1998 Oct 23;282(5389):744-6.

Genetic maps for probe

OrganismMap TypeMap NameChromosomePositionMarker NameStatus
Homo sapiensradiation hybridGeneMap99-GB4692 cr3000AFMa045xh1
Homo sapienslinkageRutgers Map6 cmD6S1686
Homo sapienslinkageMarshfield639.2 cmAFMa045xh1
Homo sapienslinkageGenethon639.3 cmAFMa045xh1
Homo sapiensradiation hybridNCBI RH6285.5 crAFMa045xh1

Computational maps for probe

Analysis is pending.

Additional Data

Field NameValues
UniSTS IDcontext specific help for: UniSTS ID73225
Probe Cross-refcontext specific help for: Probe Cross-refGDB:605380; GDB:613485
Download UniSTS epcr legacy dataDownload NCBI UniSTS data

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