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Pr012633123

Eukaryota (3 taxa) STS probe D16S3212 for ceroid-lipofuscinosis, neuronal 3 (CLN3) and 5 more genes

Synopsis

Field NameValues
NameD16S3212
AliasesRH1741; RH83454; SHGC-10032; STSG-10032
TypeSTS
Application
Source organism
Source sequence
Target organismsPan troglodytes; Pongo abelii; Homo sapiens
Target genesLOC100288419 (Homo sapiens); LOC100292214 (Homo sapiens); LOC100434230 (Pongo abelii); CLN3 (Pongo abelii); CLN3 (Homo sapiens); LOC737549 (Pan troglodytes)

Sequences

>Probe|12633123|PRIMERF Forward PCR primer (outermost) (20b)
CTGCAAGGAAACAAGGCTTC
>Probe|12633123|PRIMERR Reverse PCR primer (outermost) (20b)
CAGCTCTCCTGATACTCGGG

References

1.

A physical map of human chromosome 7: an integrated YAC contig map with average STS spacing of 79 kb.

Bouffard GG, Idol JR, Braden VV, Iyer LM, Cunningham AF, Weintraub LA, Touchman JW, Mohr-Tidwell RM, Peluso DC, Fulton RS, Ueltzen MS, Weissenbach J, Magness CL, Green ED.

Genome Res. 1997 Jul;7(7):673-92.

2.

An STS-based radiation hybrid map of the human genome.

Stewart EA, McKusick KB, Aggarwal A, Bajorek E, Brady S, Chu A, Fang N, Hadley D, Harris M, Hussain S, Lee R, Maratukulam A, O'Connor K, Perkins S, Piercy M, Qin F, Reif T, Sanders C, She X, Sun WL, Tabar P, Voyticky S, Cowles S, Fan JB, Mader C, Quackenbush J, Myers RM, Cox DR.

Genome Res. 1997 May;7(5):422-33.

Show All 4 References...

3.

A high-resolution radiation hybrid map of the human genome draft sequence.

Olivier M, Aggarwal A, Allen J, Almendras AA, Bajorek ES, Beasley EM, Brady SD, Bushard JM, Bustos VI, Chu A, Chung TR, De Witte A, Denys ME, Dominguez R, Fang NY, Foster BD, Freudenberg RW, Hadley D, Hamilton LR, Jeffrey TJ, Kelly L, Lazzeroni L, Levy MR, Lewis SC, Liu X, Lopez FJ, Louie B, Marquis JP, Martinez RA, Matsuura MK, Misherghi NS, Norton JA, Olshen A, Perkins SM, Perou AJ, Piercy C, Piercy M, Qin F, Reif T, Sheppard K, Shokoohi V, Smick GA, Sun WL, Stewart EA, Fernando J, Tejeda, Tran NM, Trejo T, Vo NT, Yan SC, Zierten DL, Zhao S, Sachidanandam R, Trask BJ, Myers RM, Cox DR.

Science. 2001 Feb 16;291(5507):1298-302.

4.

A fast and scalable radiation hybrid map construction and integration strategy.

Agarwala R, Applegate DL, Maglott D, Schuler GD, Schäffer AA.

Genome Res. 2000 Mar;10(3):350-64.

Genetic maps for probe

OrganismMap TypeMap NameChromosomePositionMarker NameStatus
Homo sapiensradiation hybridStanford-G3161533 cr10000SHGC-10032
Homo sapiensradiation hybridGeneMap99-G3161493 cr10000SHGC-10032
Homo sapiensradiation hybridTNG1616164 cr50000SHGC-10032
Homo sapienslinkageRutgers Map16 cmD16S3212
Homo sapiensradiation hybridNCBI RH16232.2 crSHGC-10032

Computational maps for probe

Analysis is pending.

Additional Data

Field NameValues
UniSTS IDcontext specific help for: UniSTS ID38243
Probe Cross-refcontext specific help for: Probe Cross-refGDB:676030; GDB:676780
Download UniSTS epcr legacy dataDownload NCBI UniSTS data

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