A) DNAP can copy one nucleotide directly after another (top path) or pause between additions (bottom path).
B) Dwell-time distributions between nucleotide additions. Distributions for the continuous route and for the pausing route are mixed based on their relative frequencies to create the full dwell time distribution,
. For this panel, the parameters are set as
ms,
ms, and
P = 0.3, to best illustrate the concept of distribution mixing.
C) Time distributions,
, resulting from repeated convolutions of the dwell time distribution, are shown for nucleotides 50, 200, 400, and 600. Iterated convolutions cause the distribution to widen for later times. For this panel and below, parameters are
ms,
ms,
.
D) An example time-varying concentration.
E) The probability of misincorporation for a polymerase subjected to the input concentration trace from panel B. The misincorporation probability is related to the concentration through a CMLF: here,
F) The misincorporation probability of the
nucleotide,
. The more the
nucleotide's incorporation-time distribution overlaps with the concentration peaks in the time-varying input signal, the larger the misincorporation probability at the
nucleotide.