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1.
Fig. 2

Fig. 2. From: The Effect of Reference Panels and Software Tools on Genotype Imputation.

Proportion of SNPs that have imputation accuracy rates equal to or exceeding 90% as a function of the number of SNPs with missing values ≤ 10% at different threshold values: (a) MACH and (b) IMPUTE.

Kwangsik Nho, et al. AMIA Annu Symp Proc. 2011;2011:1013-1018.

CitationFull text

2.
Fig. 3

Fig. 3. From: The Effect of Reference Panels and Software Tools on Genotype Imputation.

Proportion of SNPs that have imputation accuracy rates equal to or exceeding 90% as a function of the number of SNPs with missing values less than 10% at different threshold values: (a) HM3CEU and (b) G1KCEU.

Kwangsik Nho, et al. AMIA Annu Symp Proc. 2011;2011:1013-1018.

CitationFull text

3.
Fig. 1

Fig. 1. From: The Effect of Reference Panels and Software Tools on Genotype Imputation.

Imputation accuracy rate as a function of a weighted average of linkage disequilibrium (LD) ((a) MACH and (b) IMPUTE) and minor allele frequency (MAF) ((c) MACH and (d) IMPUTE) at the default confidence threshold value (qc=0.9) using HapMap 3 CEU population.

Kwangsik Nho, et al. AMIA Annu Symp Proc. 2011;2011:1013-1018.

CitationFull text

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