PMC

The Structure of the Mitochondrial Genome.
Black segments are exons, hatched segments are rRNA genes, and white segments are introns. The direction of transcription is indicated with the arrows.

Organization of the Quinate Cluster from Several Sequenced Fungal Genomes.
Numbers under the S. nodorum genes refer to the SNOG identifiers. The S. nodorum genes are located on scaffolds 19 and 12, respectively.

Colinearity between S. nodorum SN15 and L. maculans Identified by tBLASTX.
(A) Mating-type locus.
(B) A 38-kb region of L. maculans.
Colors indicate an orthologous relationship between genes, whereas black indicates no relationship. Numbers in red give coordinates on the S. nodorum scaffolds.

Homology Relationships of the S. nodorum Secretome.
The 1231 predicted extracellular proteins without GO annotation were compared with the latest releases of the U. maydis, N. crassa, and M. grisea genomes. Counts are best hits of e-value <1e-10 if predicted as extracellular by WoLF PSORT.

Phylogeny of Ascomycota Focused on Dothideomycetes.
Each species name is preceded by a unique AFTOL ID number (www.aftol.org). The tree is a 50% majority rule consensus tree of 45,000 trees obtained by Bayesian inference. All nodes had posterior probabilities of 100% except where numbers are shown above nodes. Similarly, all nodes had maximum likelihood bootstraps above 80% except where numbers are shown below nodes. Asterisks indicate nodes that were not resolved in >50% of bootstrap trees. Alignment data are provided in Supplemental Data Set 3 online. The gene data used are listed in Supplemental Table 3 online.