PMC Links for Nucleotide (Select 218556939) - PMC

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Items: 16

Select item 64143661.

Rapid and Simple Universal Escherichia coli Genotyping Method Based on Multiple-Locus Variable-Number Tandem-Repeat Analysis Using Single-Tube Multiplex PCR and Standard Gel Electrophoresis

François Caméléna, André Birgy, Yasmine Smail, Céline Courroux, Patricia Mariani-Kurkdjian, Simon Le Hello, Stéphane Bonacorsi, Philippe Bidet

Appl Environ Microbiol. 2019 Mar 15; 85(6): e02812-18. Prepublished online 2019 Jan 4. Published online 2019 Mar 6. doi: 10.1128/AEM.02812-18

PMCID:: PMC6414366

Article PDF–1.9M

Select item 48467172.

Microarray long oligo probe designing for Escherichia coli: an in-silico DNA marker extraction

Payam Behzadi, Ali Najafi, Elham Behzadi, Reza Ranjbar

Cent European J Urol. 2016; 69(1): 105–111. Published online 2016 Jan 18. doi: 10.5173/ceju.2016.654

PMCID:: PMC4846717

Article PDF–573K

Select item 47307483.

Complete genome sequence and characterization of avian pathogenic Escherichia coli field isolate ACN001

Xiangru Wang, Liuya Wei, Bin Wang, Ruixuan Zhang, Canying Liu, Dingren Bi, Huanchun Chen, Chen Tan

Stand Genomic Sci. 2016; 11: 13. Published online 2016 Jan 28. doi: 10.1186/s40793-015-0126-6

PMCID:: PMC4730748

Article PDF–1.3M

Select item 45787814.

Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033

Canying Liu, Huajun Zheng, Minjun Yang, Zhuofei Xu, Xiangru Wang, Liuya Wei, Biao Tang, Feng Liu, Yanyan Zhang, Yi Ding, Xibiao Tang, Bin Wu, Timothy J. Johnson, Huanchun Chen, Chen Tan

BMC Genomics. 2015; 16(1): 717. Published online 2015 Sep 21. doi: 10.1186/s12864-015-1890-9

PMCID:: PMC4578781

Article PDF–2.2M

Select item 45396855.

The evolutionary dynamics of tRNA-gene copy number and codon-use in E. coli.

Michael J. McDonald, Chih-Hung Chou, Krishna BS Swamy, Hsien-Da Huang, Jun-Yi Leu

BMC Evol Biol. 2015; 15: 163. Published online 2015 Aug 19. doi: 10.1186/s12862-015-0441-y

PMCID:: PMC4539685

Article PDF–1.0M

Select item 38439786.

Draft genome sequences of five recent human uropathogenic Escherichia coli isolates

Sargurunathan Subashchandrabose, Tracy H. Hazen, David A. Rasko, Harry L. T. Mobley

Pathog Dis. Author manuscript; available in PMC 2015 Jan 2.

Published in final edited form as: Pathog Dis. 2013 Oct; 69(1): 66–70. Published online 2013 Oct 1. doi: 10.1111/2049-632X.12059

PMCID:: PMC3843978

Article PDF–224K

Select item 36603977.

RNA-Mediated Thermoregulation of Iron-Acquisition Genes in Shigella dysenteriae and Pathogenic Escherichia coli

Andrew B. Kouse, Francesco Righetti, Jens Kortmann, Franz Narberhaus, Erin R. Murphy

PLoS One. 2013; 8(5): e63781. Published online 2013 May 21. doi: 10.1371/journal.pone.0063781

Correction in:: PLoS One. 2021; 16(6): e0252744.

PMCID:: PMC3660397

Article PDF–807K

Select item 36479288.

Outbreak Investigation Using High-Throughput Genome Sequencing within a Diagnostic Microbiology Laboratory

Norelle L. Sherry, Jessica L. Porter, Torsten Seemann, Andrew Watkins, Timothy P. Stinear, Benjamin P. Howden

J Clin Microbiol. 2013 May; 51(5): 1396–1401. doi: 10.1128/JCM.03332-12

PMCID:: PMC3647928

Article PDF–347K

Select item 36375549.

Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche

Eric J de Muinck, Karin Lagesen, Jan Egil Afset, Xavier Didelot, Kjersti S Rønningen, Knut Rudi, Nils Chr Stenseth, Pål Trosvik

BMC Genomics. 2013; 14: 81. Published online 2013 Feb 5. doi: 10.1186/1471-2164-14-81

PMCID:: PMC3637554

Article PDF–1.9M

Select item 349118310.

Comparative Genomics and stx Phage Characterization of LEE-Negative Shiga Toxin-Producing Escherichia coli

Susan R. Steyert, Jason W. Sahl, Claire M. Fraser, Louise D. Teel, Flemming Scheutz, David A. Rasko

Front Cell Infect Microbiol. 2012; 2: 133. Prepublished online 2012 May 21. Published online 2012 Nov 7. doi: 10.3389/fcimb.2012.00133

PMCID:: PMC3491183

Article PDF–2.0M

Select item 347239611.

Phylogeny rather than ecology or lifestyle biases the construction of Escherichia coli–Shigella genetic exchange communities

Elizabeth Skippington, Mark A. Ragan

Open Biol. 2012 Sep; 2(9): 120112. doi: 10.1098/rsob.120112

PMCID:: PMC3472396

Article PDF–1.5M

Select item 347200512.

Lethal inflammasome activation by a multi-drug resistant pathobiont upon antibiotic disruption of the microbiota

Janelle S. Ayres, Norver J. Trinidad, Russell E. Vance

Nat Med. Author manuscript; available in PMC 2012 Nov 1.

Published in final edited form as: Nat Med. 2012 May; 18(5): 799–806. doi: 10.1038/nm.2729

PMCID:: PMC3472005

Article PDF–1.0M

Select item 328019913.

2011 German Escherichia coli O104:H4 outbreak: whole-genome phylogeny without alignment

Man Kit Cheung, Lei Li, Wenyan Nong, Hoi Shan Kwan

BMC Res Notes. 2011; 4: 533. Published online 2011 Dec 13. doi: 10.1186/1756-0500-4-533

PMCID:: PMC3280199

Article PDF–1.0M

Select item 326812214.

A new strategy for better genome assembly from very short reads

Yan Ji, Yixiang Shi, Guohui Ding, Yixue Li

BMC Bioinformatics. 2011; 12: 493. Published online 2011 Dec 30. doi: 10.1186/1471-2105-12-493

PMCID:: PMC3268122

Article PDF–975K

Select item 320897715.

Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill

Joel E. Kostka, Om Prakash, Will A. Overholt, Stefan J. Green, Gina Freyer, Andy Canion, Jonathan Delgardio, Nikita Norton, Terry C. Hazen, Markus Huettel

Appl Environ Microbiol. 2011 Nov; 77(22): 7962–7974. doi: 10.1128/AEM.05402-11