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Items: 1 to 20 of 42

1.
Linking De Novo Assembly Results with Long DNA Reads Using the dnaasm-link Application
Wiktor Kuśmirek, Wiktor Franus, Robert Nowak
Biomed Res Int. 2019; 2019: 7847064. Published online 2019 Apr 11. doi: 10.1155/2019/7847064
PMCID:
PMC6487145
ArticlePDF–896K
2.
Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry
Peter L Freddolino, Jamie Yang, Amir Momen-Roknabadi, Saeed Tavazoie
eLife. 2018; 7: e31867. Published online 2018 Apr 5. doi: 10.7554/eLife.31867
PMCID:
PMC5919758
ArticlePDF–2.8M
3.
The effects of transcription and recombination on mutational dynamics of short tandem repeats
Monika Zavodna, Andrew Bagshaw, Rudiger Brauning, Neil J Gemmell
Nucleic Acids Res. 2018 Feb 16; 46(3): 1321–1330. Published online 2017 Dec 29. doi: 10.1093/nar/gkx1253
PMCID:
PMC5814968
ArticlePDF–1.2M
4.
Integrated analysis of individual codon contribution to protein biosynthesis reveals a new approach to improving the basis of rational gene design
Juan C. Villada, Otávio José Bernardes Brustolini, Wendel Batista da Silveira
DNA Res. 2017 Aug; 24(4): 419–434. Published online 2017 Apr 24. doi: 10.1093/dnares/dsx014
PMCID:
PMC5737324
ArticlePDF–2.3M
5.
Scarless Gene Tagging with One-Step Transformation and Two-Step Selection in Saccharomyces cerevisiae and Schizosaccharomyces pombe
Dirk Landgraf, Dann Huh, Erinc Hallacli, Susan Lindquist
PLoS One. 2016; 11(10): e0163950. Published online 2016 Oct 13. doi: 10.1371/journal.pone.0163950
PMCID:
PMC5063382
ArticlePDF–4.1M
6.
Massive Amplification at an Unselected Locus Accompanies Complex Chromosomal Rearrangements in Yeast
Agnès Thierry, Varun Khanna, Bernard Dujon
G3 (Bethesda) 2016 May; 6(5): 1201–1215. Published online 2016 Mar 4. doi: 10.1534/g3.115.024547
PMCID:
PMC4856073
ArticlePDF–3.5M
7.
Concerted activities of Mcm4, Sld3, and Dbf4 in control of origin activation and DNA replication fork progression
Yi-Jun Sheu, Justin B. Kinney, Bruce Stillman
Genome Res. 2016 Mar; 26(3): 315–330. doi: 10.1101/gr.195248.115
PMCID:
PMC4772014
ArticlePDF–2.8M
8.
Extracting DNA words based on the sequence features: non-uniform distribution and integrity
Zhi Li, Hongyan Cao, Yuehua Cui, Yanbo Zhang
Theor Biol Med Model. 2016; 13: 2. Published online 2016 Jan 25. doi: 10.1186/s12976-016-0028-3
PMCID:
PMC4727310
ArticlePDF–785K
9.
Long Read Alignment with Parallel MapReduce Cloud Platform
Ahmed Abdulhakim Al-Absi, Dae-Ki Kang
Biomed Res Int. 2015; 2015: 807407. Published online 2015 Dec 29. doi: 10.1155/2015/807407
PMCID:
PMC4709609
ArticlePDF–2.4M
10.
Genetic basis of the highly efficient yeast Kluyveromyces marxianus: complete genome sequence and transcriptome analyses
Noppon Lertwattanasakul, Tomoyuki Kosaka, Akira Hosoyama, Yutaka Suzuki, Nadchanok Rodrussamee, Minenosuke Matsutani, Masayuki Murata, Naoko Fujimoto, Suprayogi, Keiko Tsuchikane, Savitree Limtong, Nobuyuki Fujita, Mamoru Yamada
Biotechnol Biofuels. 2015; 8: 47. Published online 2015 Mar 18. doi: 10.1186/s13068-015-0227-x
PMCID:
PMC4381506
ArticlePDF–1.3M
11.
Macrotene chromosomes provide insights to a new mechanism of high-order gene amplification in eukaryotes
Agnès Thierry, Varun Khanna, Sophie Créno, Ingrid Lafontaine, Laurence Ma, Christiane Bouchier, Bernard Dujon
Nat Commun. 2015 Jan 30; 6: 6154. Published online 2015 Jan 30. doi: 10.1038/ncomms7154
PMCID:
PMC4317496
ArticlePDF–2.6M
12.
The Accuracy, Feasibility and Challenges of Sequencing Short Tandem Repeats Using Next-Generation Sequencing Platforms
Monika Zavodna, Andrew Bagshaw, Rudiger Brauning, Neil J. Gemmell
PLoS One. 2014; 9(12): e113862. Published online 2014 Dec 1. doi: 10.1371/journal.pone.0113862
PMCID:
PMC4250034
ArticlePDF–281K
13.
Highly Specific Contractions of a Single CAG/CTG Trinucleotide Repeat by TALEN in Yeast
Guy-Franck Richard, David Viterbo, Varun Khanna, Valentine Mosbach, Lauriane Castelain, Bernard Dujon
PLoS One. 2014; 9(4): e95611. Published online 2014 Apr 18. doi: 10.1371/journal.pone.0095611
PMCID:
PMC3991675
ArticlePDF–1.2M
14.
The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
G3 (Bethesda) 2014 Mar; 4(3): 389–398. Published online 2013 Dec 27. doi: 10.1534/g3.113.008995
PMCID:
PMC3962479
ArticlePDF–1006K
15.
Quality assessment and control of tissue specific RNA-seq libraries of Drosophila transgenic RNAi models
Andreia J. Amaral, Francisco F. Brito, Tamar Chobanyan, Seiko Yoshikawa, Takakazu Yokokura, David Van Vactor, Margarida Gama-Carvalho
Front Genet. 2014; 5: 43. Published online 2014 Mar 5. doi: 10.3389/fgene.2014.00043
PMCID:
PMC3942661
ArticlePDF–1.3M
16.
Molecular Components of Nitrate and Nitrite Efflux in Yeast
Elisa Cabrera, Rafaela González-Montelongo, Teresa Giraldez, Diego Alvarez de la Rosa, José M. Siverio
Eukaryot Cell. 2014 Feb; 13(2): 267–278. doi: 10.1128/EC.00268-13
PMCID:
PMC3910984
ArticlePDF–1.7M
17.
Genomic analysis of Saccharomyces cerevisiae isolates that grow optimally with glucose as the sole carbon source
Anthony D. Aragon, Norah Torrez-Martinez, Jeremy S. Edwards
Electrophoresis. Author manuscript; available in PMC 2013 Dec 1.
Published in final edited form as: Electrophoresis. 2012 Dec; 33(23): 10.1002/elps.201200172. Published online 2012 Nov 8. doi: 10.1002/elps.201200172
PMCID:
PMC3822012
ArticlePDF–131K
18.
Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions
Yan ping Chen, Jeffery S Pettis, Yan Zhao, Xinyue Liu, Luke J Tallon, Lisa D Sadzewicz, Renhua Li, Huoqing Zheng, Shaokang Huang, Xuan Zhang, Michele C Hamilton, Stephen F Pernal, Andony P Melathopoulos, Xianghe Yan, Jay D Evans
BMC Genomics. 2013; 14: 451. Published online 2013 Jul 5. doi: 10.1186/1471-2164-14-451
PMCID:
PMC3726280
ArticlePDF–1.6M
19.
Starvation-Associated Genome Restructuring Can Lead to Reproductive Isolation in Yeast
Evgueny Kroll, Scott Coyle, Barbara Dunn, Gregory Koniges, Anthony Aragon, Jeremy Edwards, Frank Rosenzweig
PLoS One. 2013; 8(7): e66414. Published online 2013 Jul 24. doi: 10.1371/journal.pone.0066414
PMCID:
PMC3722211
ArticlePDF–577K
20.
A Convolutional Code-Based Sequence Analysis Model and Its Application
Xiao Liu, Xiaoli Geng
Int J Mol Sci. 2013 Apr; 14(4): 8393–8405. Published online 2013 Apr 16. doi: 10.3390/ijms14048393
PMCID:
PMC3645750
ArticlePDF–517K

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