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Volume 41(1);  2009
Editorial
GSE is now an open access journal published by BioMed Central
Hélène Hayes, Philippe Baret, and Didier Boichard
Genet Sel Evol. 2009; 41(1): 1. Published online 2009 January 5. doi: 10.1186/1297-9686-41-1.
PMCID: PMC2637031
Research
A fast algorithm for BayesB type of prediction of genome-wide estimates of genetic value
Theo HE Meuwissen, Trygve R Solberg, Ross Shepherd, and John A Woolliams
Genet Sel Evol. 2009; 41(1): 2. Published online 2009 January 5. doi: 10.1186/1297-9686-41-2.
PMCID: PMC2637029
Mapping carcass and meat quality QTL on Sus Scrofa chromosome 2 in commercial finishing pigs
Henri CM Heuven, Rik HJ van Wijk, Bert Dibbits, Tony A van Kampen, Egbert F Knol, and Henk Bovenhuis
Genet Sel Evol. 2009; 41(1): 4. Published online 2009 January 5. doi: 10.1186/1297-9686-41-4.
PMCID: PMC2637027
Detecting parent of origin and dominant QTL in a two-generation commercial poultry pedigree using variance component methodology
Suzanne J Rowe, Ricardo Pong-Wong, Christopher S Haley, Sara A Knott, and Dirk-Jan De Koning
Genet Sel Evol. 2009; 41(1): 6. Published online 2009 January 5. doi: 10.1186/1297-9686-41-6.
PMCID: PMC2637028
Changes in muscle cell cation regulation and meat quality traits are associated with genetic selection for high body weight and meat yield in broiler chickens
Dale A Sandercock, Zoe E Barker, Malcolm A Mitchell, and Paul M Hocking
Genet Sel Evol. 2009; 41(1): 8. Published online 2009 January 14. doi: 10.1186/1297-9686-41-8.
PMCID: PMC2637030
Model for fitting longitudinal traits subject to threshold response applied to genetic evaluation for heat tolerance
Juan Pablo Sánchez, Romdhane Rekaya, and Ignacy Misztal
Genet Sel Evol. 2009; 41(1): 10. Published online 2009 January 14. doi: 10.1186/1297-9686-41-10.
PMCID: PMC2671243
Genomic selection of purebreds for crossbred performance
Noelia Ibánẽz-Escriche, Rohan L Fernando, Ali Toosi, and Jack CM Dekkers
Genet Sel Evol. 2009; 41(1): 12. Published online 2009 January 15. doi: 10.1186/1297-9686-41-12.
PMCID: PMC2730054
Large-scale association study for structural soundness and leg locomotion traits in the pig
Bin Fan, Suneel K Onteru, Benny E Mote, Timo Serenius, Kenneth J Stalder, and Max F Rothschild
Genet Sel Evol. 2009; 41(1): 14. Published online 2009 January 21. doi: 10.1186/1297-9686-41-14.
PMCID: PMC2657774
Detecting selection-induced departures from Hardy-Weinberg proportions
Joseph Lachance
Genet Sel Evol. 2009; 41(1): 15. Published online 2009 January 21. doi: 10.1186/1297-9686-41-15.
PMCID: PMC2660905
A genetic epidemiological model to describe resistance to an endemic bacterial disease in livestock: application to footrot in sheep
Gert Jan Nieuwhof, Joanne Conington, and Stephen C Bishop
Genet Sel Evol. 2009; 41(1): 19. Published online 2009 January 26. doi: 10.1186/1297-9686-41-19.
PMCID: PMC2657214
Genomic breeding value estimation using nonparametric additive regression models
Jörn Bennewitz, Trygve Solberg, and Theo Meuwissen
Genet Sel Evol. 2009; 41(1): 20. Published online 2009 January 27. doi: 10.1186/1297-9686-41-20.
PMCID: PMC2657215
Inclusion of genetically identical animals to a numerator relationship matrix and modification of its inverse
Takuro Oikawa and Kazuhiro Yasuda
Genet Sel Evol. 2009; 41(1): 25. Published online 2009 March 3. doi: 10.1186/1297-9686-41-25.
PMCID: PMC2674412
Precision of genetic parameters and breeding values estimated in marker assisted BLUP genetic evaluation
Stefan Neuner, Christian Edel, Reiner Emmerling, Georg Thaller, and Kay-Uwe Götz
Genet Sel Evol. 2009; 41(1): 26. Published online 2009 March 4. doi: 10.1186/1297-9686-41-26.
PMCID: PMC2657907
Genomic scan for quantitative trait loci of chemical and physical body composition and deposition on pig chromosome X including the pseudoautosomal region of males
Carol-Anne Duthie, Geoff Simm, Miguel Pérez-Enciso, Andrea Doeschl-Wilson, Ernst Kalm, Pieter W Knap, and Rainer Roehe
Genet Sel Evol. 2009; 41(1): 27. Published online 2009 March 11. doi: 10.1186/1297-9686-41-27.
PMCID: PMC2666071
Duck (Anas platyrhynchos) linkage mapping by AFLP fingerprinting
Chang-Wen Huang, Yu-Shin Cheng, Roger Rouvier, Kuo-Tai Yang, Chean-Ping Wu, Hsiu-Lin Huang, and Mu-Chiou Huang
Genet Sel Evol. 2009; 41(1): 28. Published online 2009 March 17. doi: 10.1186/1297-9686-41-28.
PMCID: PMC2666072
Reducing dimensionality for prediction of genome-wide breeding values
Trygve R Solberg, Anna K Sonesson, John A Woolliams, and Theo HE Meuwissen
Genet Sel Evol. 2009; 41(1): 29. Published online 2009 March 18. doi: 10.1186/1297-9686-41-29.
PMCID: PMC2671482
Reducing the bias of estimates of genotype by environment interactions in random regression sire models
Marie Lillehammer, Jørgen Ødegård, and Theo HE Meuwissen
Genet Sel Evol. 2009; 41(1): 30. Published online 2009 March 19. doi: 10.1186/1297-9686-41-30.
PMCID: PMC2670816
Eleven generations of selection for the duration of fertility in the intergeneric crossbreeding of ducks
Yu-Shin Cheng, Roger Rouvier, Hsiao-Lung Liu, Shang-Chi Huang, Yu-Chia Huang, Chung-Wen Liao, Jui-Jane Liu Tai, Chein Tai, and Jean-Paul Poivey
Genet Sel Evol. 2009; 41(1): 32. Published online 2009 March 31. doi: 10.1186/1297-9686-41-32.
PMCID: PMC2674413
Estimation in a multiplicative mixed model involving a genetic relationship matrix
Alison M Kelly, Brian R Cullis, Arthur R Gilmour, John A Eccleston, and Robin Thompson
Genet Sel Evol. 2009; 41(1): 33. Published online 2009 April 9. doi: 10.1186/1297-9686-41-33.
PMCID: PMC2686677
Mapping quantitative trait loci (QTL) in sheep. I. A new male framework linkage map and QTL for growth rate and body weight
Herman W Raadsma, Peter C Thomson, Kyall R Zenger, Colin Cavanagh, Mary K Lam, Elisabeth Jonas, Marilyn Jones, Gina Attard, David Palmer, and Frank W Nicholas
Genet Sel Evol. 2009; 41(1): 34. Published online 2009 April 24. doi: 10.1186/1297-9686-41-34.
PMCID: PMC2686678
Accuracy of breeding values of 'unrelated' individuals predicted by dense SNP genotyping
Theo HE Meuwissen
Genet Sel Evol. 2009; 41(1): 35. Published online 2009 June 11. doi: 10.1186/1297-9686-41-35.
PMCID: PMC2708128
Association of selected SNP with carcass and taste panel assessed meat quality traits in a commercial population of Aberdeen Angus-sired beef cattle
Jennifer L Gill, Stephen C Bishop, Caroline McCorquodale, John L Williams, and Pamela Wiener
Genet Sel Evol. 2009; 41(1): 36. Published online 2009 June 25. doi: 10.1186/1297-9686-41-36.
PMCID: PMC2714298
Testing strategies for genomic selection in aquaculture breeding programs
Anna K Sonesson and Theo HE Meuwissen
Genet Sel Evol. 2009; 41(1): 37. Published online 2009 June 30. doi: 10.1186/1297-9686-41-37.
PMCID: PMC2714299
Introgression of a major QTL from an inferior into a superior population using genomic selection
Jørgen Ødegård, Anna K Sonesson, M Hossein Yazdi, and Theo HE Meuwissen
Genet Sel Evol. 2009; 41(1): 38. Published online 2009 July 27. doi: 10.1186/1297-9686-41-38.
PMCID: PMC2731732
History and structure of the closed pedigreed population of Icelandic Sheepdogs
Pieter A Oliehoek, Piter Bijma, and Arie van der Meijden
Genet Sel Evol. 2009; 41(1): 39. Published online 2009 August 6. doi: 10.1186/1297-9686-41-39.
PMCID: PMC2736928
Haplotype inference in crossbred populations without pedigree information
Albart Coster, Henri CM Heuven, Rohan L Fernando, and Jack CM Dekkers
Genet Sel Evol. 2009; 41(1): 40. Published online 2009 August 11. doi: 10.1186/1297-9686-41-40.
PMCID: PMC2741458
Genetic variation in the pleiotropic association between physical activity and body weight in mice
Larry J Leamy, Daniel Pomp, and J Timothy Lightfoot
Genet Sel Evol. 2009; 41(1): 41. Published online 2009 September 23. doi: 10.1186/1297-9686-41-41.
PMCID: PMC2760520
Fuzzy classification of phantom parent groups in an animal model
Freddy Fikse
Genet Sel Evol. 2009; 41(1): 42. Published online 2009 September 28. doi: 10.1186/1297-9686-41-42.
PMCID: PMC2762463
Linear models for joint association and linkage QTL mapping
Andrés Legarra and Rohan L Fernando
Genet Sel Evol. 2009; 41(1): 43. Published online 2009 September 29. doi: 10.1186/1297-9686-41-43.
PMCID: PMC2764561
Detection of multiple quantitative trait loci and their pleiotropic effects in outbred pig populations
Yoshitaka Nagamine, Ricardo Pong-Wong, Peter M Visscher, and Chris S Haley
Genet Sel Evol. 2009; 41(1): 44. Published online 2009 October 6. doi: 10.1186/1297-9686-41-44.
PMCID: PMC2762464
Mapping quantitative trait loci (QTL) in sheep. II. Meta-assembly and identification of novel QTL for milk production traits in sheep
Herman W Raadsma, Elisabeth Jonas, David McGill, Matthew Hobbs, Mary K Lam, and Peter C Thomson
Genet Sel Evol. 2009; 41(1): 45. Published online 2009 October 22. doi: 10.1186/1297-9686-41-45.
PMCID: PMC2772855
Quantitative trait loci for resistance to trichostrongylid infection in Spanish Churra sheep
Beatriz Gutiérrez-Gil, Jorge Pérez, Lorena Álvarez, Maria Martínez-Valladares, Luis-Fernando de la Fuente, Yolanda Bayón, Aranzazu Meana, Fermin San Primitivo, Francisco-Antonio Rojo-Vázquez, and Juan-José Arranz
Genet Sel Evol. 2009; 41(1): 46. Published online 2009 October 28. doi: 10.1186/1297-9686-41-46.
PMCID: PMC2776584
Inheritance of fertility in broiler chickens
Anna Wolc, Ian MS White, Victor E Olori, and William G Hill
Genet Sel Evol. 2009; 41(1): 47. Published online 2009 October 29. doi: 10.1186/1297-9686-41-47.
PMCID: PMC2775730
Estimated breeding values and association mapping for persistency and total milk yield using natural cubic smoothing splines
Klara L Verbyla and Arunas P Verbyla
Genet Sel Evol. 2009; 41(1): 48. Published online 2009 November 5. doi: 10.1186/1297-9686-41-48.
PMCID: PMC2785761
Assessing population genetic structure via the maximisation of genetic distance
Silvia T Rodríguez-Ramilo, Miguel A Toro, and Jesús Fernández
Genet Sel Evol. 2009; 41(1): 49. Published online 2009 November 9. doi: 10.1186/1297-9686-41-49.
PMCID: PMC2776585
A fast algorithm for estimating transmission probabilities in QTL detection designs with dense maps
Jean-Michel Elsen, Olivier Filangi, Hélène Gilbert, Pascale Le Roy, and Carole Moreno
Genet Sel Evol. 2009; 41(1): 50. Published online 2009 November 17. doi: 10.1186/1297-9686-41-50.
PMCID: PMC2793243
Accuracy of genomic breeding values in multi-breed dairy cattle populations
Ben J Hayes, Phillip J Bowman, Amanda C Chamberlain, Klara Verbyla, and Mike E Goddard
Genet Sel Evol. 2009; 41(1): 51. Published online 2009 November 24. doi: 10.1186/1297-9686-41-51.
PMCID: PMC2791750
An efficient algorithm to compute marginal posterior genotype probabilities for every member of a pedigree with loops
Liviu R Totir, Rohan L Fernando, and Joseph Abraham
Genet Sel Evol. 2009; 41(1): 52. Published online 2009 December 3. doi: 10.1186/1297-9686-41-52.
PMCID: PMC2801663
Persistence of accuracy of genome-wide breeding values over generations when including a polygenic effect
Trygve R Solberg, Anna K Sonesson, John A Woolliams, Jørgen Ødegard, and Theo HE Meuwissen
Genet Sel Evol. 2009; 41(1): 53. Published online 2009 December 29. doi: 10.1186/1297-9686-41-53.
PMCID: PMC2813225
Traits associated with innate and adaptive immunity in pigs: heritability and associations with performance under different health status conditions
Mary Clapperton, Abigail B Diack, Oswald Matika, Elizabeth J Glass, Christy D Gladney, Martha A Mellencamp, Annabelle Hoste, and Stephen C Bishop
Genet Sel Evol. 2009; 41(1): 54. Published online 2009 December 30. doi: 10.1186/1297-9686-41-54.
PMCID: PMC2807426
Deregressing estimated breeding values and weighting information for genomic regression analyses
Dorian J Garrick, Jeremy F Taylor, and Rohan L Fernando
Genet Sel Evol. 2009; 41(1): 55. Published online 2009 December 31. doi: 10.1186/1297-9686-41-55.
PMCID: PMC2817680
A comparison of five methods to predict genomic breeding values of dairy bulls from genome-wide SNP markers
Gerhard Moser, Bruce Tier, Ron E Crump, Mehar S Khatkar, and Herman W Raadsma
Genet Sel Evol. 2009; 41(1): 56. Published online 2009 December 31. doi: 10.1186/1297-9686-41-56.
PMCID: PMC2814805
Review
Factor-analytic models for genotype × environment type problems and structured covariance matrices
Karin Meyer
Genet Sel Evol. 2009; 41(1): 21. Published online 2009 January 30. doi: 10.1186/1297-9686-41-21.
PMCID: PMC2674411
Correction
Genetic diversity of a large set of horse breeds raised in France assessed by microsatellite polymorphism
Grégoire Leroy, Lucille Callède, Etienne Verrier, Jean-Claude Mériaux, Anne Ricard, Coralie Danchin-Burge, and Xavier Rognon
Genet Sel Evol. 2009; 41(1): 31. Published online 2009 March 19. doi: 10.1186/1297-9686-41-31.
PMCID: PMC2662794
Corrects: Grégoire Leroy, et al. Genetic diversity of a large set of horse breeds raised in France assessed by microsatellite polymorphism. Genet Sel Evol. 2009 January 5; 41: 5.
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