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Editorial GSE is now an open access journal published by BioMed Central Hélène Hayes, Philippe Baret, and Didier Boichard Genet Sel Evol. 2009; 41(1): 1. Published online 2009 January 5. doi: 10.1186/1297-9686-41-1.PMCID: PMC2637031 Research A fast algorithm for BayesB type of prediction of genome-wide estimates of genetic value Theo HE Meuwissen, Trygve R Solberg, Ross Shepherd, and John A Woolliams Genet Sel Evol. 2009; 41(1): 2. Published online 2009 January 5. doi: 10.1186/1297-9686-41-2.PMCID: PMC2637029 Mapping carcass and meat quality QTL on Sus Scrofa chromosome 2 in commercial finishing pigs Henri CM Heuven, Rik HJ van Wijk, Bert Dibbits, Tony A van Kampen, Egbert F Knol, and Henk Bovenhuis Genet Sel Evol. 2009; 41(1): 4. Published online 2009 January 5. doi: 10.1186/1297-9686-41-4.PMCID: PMC2637027 Detecting parent of origin and dominant QTL in a two-generation commercial poultry pedigree using variance component methodology Suzanne J Rowe, Ricardo Pong-Wong, Christopher S Haley, Sara A Knott, and Dirk-Jan De Koning Genet Sel Evol. 2009; 41(1): 6. Published online 2009 January 5. doi: 10.1186/1297-9686-41-6.PMCID: PMC2637028 Changes in muscle cell cation regulation and meat quality traits are associated with genetic selection for high body weight and meat yield in broiler chickens Dale A Sandercock, Zoe E Barker, Malcolm A Mitchell, and Paul M Hocking Genet Sel Evol. 2009; 41(1): 8. Published online 2009 January 14. doi: 10.1186/1297-9686-41-8.PMCID: PMC2637030 Model for fitting longitudinal traits subject to threshold response applied to genetic evaluation for heat tolerance Juan Pablo Sánchez, Romdhane Rekaya, and Ignacy Misztal Genet Sel Evol. 2009; 41(1): 10. Published online 2009 January 14. doi: 10.1186/1297-9686-41-10.PMCID: PMC2671243 Genomic selection of purebreds for crossbred performance Noelia Ibánẽz-Escriche, Rohan L Fernando, Ali Toosi, and Jack CM Dekkers Genet Sel Evol. 2009; 41(1): 12. Published online 2009 January 15. doi: 10.1186/1297-9686-41-12.PMCID: PMC2730054 Large-scale association study for structural soundness and leg locomotion traits in the pig Bin Fan, Suneel K Onteru, Benny E Mote, Timo Serenius, Kenneth J Stalder, and Max F Rothschild Genet Sel Evol. 2009; 41(1): 14. Published online 2009 January 21. doi: 10.1186/1297-9686-41-14.PMCID: PMC2657774 Detecting selection-induced departures from Hardy-Weinberg proportions Joseph Lachance Genet Sel Evol. 2009; 41(1): 15. Published online 2009 January 21. doi: 10.1186/1297-9686-41-15.PMCID: PMC2660905 A genetic epidemiological model to describe resistance to an endemic bacterial disease in livestock: application to footrot in sheep Gert Jan Nieuwhof, Joanne Conington, and Stephen C Bishop Genet Sel Evol. 2009; 41(1): 19. Published online 2009 January 26. doi: 10.1186/1297-9686-41-19.PMCID: PMC2657214 Genomic breeding value estimation using nonparametric additive regression models Jörn Bennewitz, Trygve Solberg, and Theo Meuwissen Genet Sel Evol. 2009; 41(1): 20. Published online 2009 January 27. doi: 10.1186/1297-9686-41-20.PMCID: PMC2657215 Inclusion of genetically identical animals to a numerator relationship matrix and modification of its inverse Takuro Oikawa and Kazuhiro Yasuda Genet Sel Evol. 2009; 41(1): 25. Published online 2009 March 3. doi: 10.1186/1297-9686-41-25.PMCID: PMC2674412 Precision of genetic parameters and breeding values estimated in marker assisted BLUP genetic evaluation Stefan Neuner, Christian Edel, Reiner Emmerling, Georg Thaller, and Kay-Uwe Götz Genet Sel Evol. 2009; 41(1): 26. Published online 2009 March 4. doi: 10.1186/1297-9686-41-26.PMCID: PMC2657907 Genomic scan for quantitative trait loci of chemical and physical body composition and deposition on pig chromosome X including the pseudoautosomal region of males Carol-Anne Duthie, Geoff Simm, Miguel Pérez-Enciso, Andrea Doeschl-Wilson, Ernst Kalm, Pieter W Knap, and Rainer Roehe Genet Sel Evol. 2009; 41(1): 27. Published online 2009 March 11. doi: 10.1186/1297-9686-41-27.PMCID: PMC2666071 Duck (Anas platyrhynchos) linkage mapping by AFLP fingerprinting Chang-Wen Huang, Yu-Shin Cheng, Roger Rouvier, Kuo-Tai Yang, Chean-Ping Wu, Hsiu-Lin Huang, and Mu-Chiou Huang Genet Sel Evol. 2009; 41(1): 28. Published online 2009 March 17. doi: 10.1186/1297-9686-41-28.PMCID: PMC2666072 Reducing dimensionality for prediction of genome-wide breeding values Trygve R Solberg, Anna K Sonesson, John A Woolliams, and Theo HE Meuwissen Genet Sel Evol. 2009; 41(1): 29. Published online 2009 March 18. doi: 10.1186/1297-9686-41-29.PMCID: PMC2671482 Reducing the bias of estimates of genotype by environment interactions in random regression sire models Marie Lillehammer, Jørgen Ødegård, and Theo HE Meuwissen Genet Sel Evol. 2009; 41(1): 30. Published online 2009 March 19. doi: 10.1186/1297-9686-41-30.PMCID: PMC2670816 Eleven generations of selection for the duration of fertility in the intergeneric crossbreeding of ducks Yu-Shin Cheng, Roger Rouvier, Hsiao-Lung Liu, Shang-Chi Huang, Yu-Chia Huang, Chung-Wen Liao, Jui-Jane Liu Tai, Chein Tai, and Jean-Paul Poivey Genet Sel Evol. 2009; 41(1): 32. Published online 2009 March 31. doi: 10.1186/1297-9686-41-32.PMCID: PMC2674413 Estimation in a multiplicative mixed model involving a genetic relationship matrix Alison M Kelly, Brian R Cullis, Arthur R Gilmour, John A Eccleston, and Robin Thompson Genet Sel Evol. 2009; 41(1): 33. Published online 2009 April 9. doi: 10.1186/1297-9686-41-33.PMCID: PMC2686677 Mapping quantitative trait loci (QTL) in sheep. I. A new male framework linkage map and QTL for growth rate and body weight Herman W Raadsma, Peter C Thomson, Kyall R Zenger, Colin Cavanagh, Mary K Lam, Elisabeth Jonas, Marilyn Jones, Gina Attard, David Palmer, and Frank W Nicholas Genet Sel Evol. 2009; 41(1): 34. Published online 2009 April 24. doi: 10.1186/1297-9686-41-34.PMCID: PMC2686678 Accuracy of breeding values of 'unrelated' individuals predicted by dense SNP genotyping Theo HE Meuwissen Genet Sel Evol. 2009; 41(1): 35. Published online 2009 June 11. doi: 10.1186/1297-9686-41-35.PMCID: PMC2708128 Association of selected SNP with carcass and taste panel assessed meat quality traits in a commercial population of Aberdeen Angus-sired beef cattle Jennifer L Gill, Stephen C Bishop, Caroline McCorquodale, John L Williams, and Pamela Wiener Genet Sel Evol. 2009; 41(1): 36. Published online 2009 June 25. doi: 10.1186/1297-9686-41-36.PMCID: PMC2714298 Testing strategies for genomic selection in aquaculture breeding programs Anna K Sonesson and Theo HE Meuwissen Genet Sel Evol. 2009; 41(1): 37. Published online 2009 June 30. doi: 10.1186/1297-9686-41-37.PMCID: PMC2714299 Introgression of a major QTL from an inferior into a superior population using genomic selection Jørgen Ødegård, Anna K Sonesson, M Hossein Yazdi, and Theo HE Meuwissen Genet Sel Evol. 2009; 41(1): 38. Published online 2009 July 27. doi: 10.1186/1297-9686-41-38.PMCID: PMC2731732 History and structure of the closed pedigreed population of Icelandic Sheepdogs Pieter A Oliehoek, Piter Bijma, and Arie van der Meijden Genet Sel Evol. 2009; 41(1): 39. Published online 2009 August 6. doi: 10.1186/1297-9686-41-39.PMCID: PMC2736928 Haplotype inference in crossbred populations without pedigree information Albart Coster, Henri CM Heuven, Rohan L Fernando, and Jack CM Dekkers Genet Sel Evol. 2009; 41(1): 40. Published online 2009 August 11. doi: 10.1186/1297-9686-41-40.PMCID: PMC2741458 Genetic variation in the pleiotropic association between physical activity and body weight in mice Larry J Leamy, Daniel Pomp, and J Timothy Lightfoot Genet Sel Evol. 2009; 41(1): 41. Published online 2009 September 23. doi: 10.1186/1297-9686-41-41.PMCID: PMC2760520 Fuzzy classification of phantom parent groups in an animal model Freddy Fikse Genet Sel Evol. 2009; 41(1): 42. Published online 2009 September 28. doi: 10.1186/1297-9686-41-42.PMCID: PMC2762463 Linear models for joint association and linkage QTL mapping Andrés Legarra and Rohan L Fernando Genet Sel Evol. 2009; 41(1): 43. Published online 2009 September 29. doi: 10.1186/1297-9686-41-43.PMCID: PMC2764561 Detection of multiple quantitative trait loci and their pleiotropic effects in outbred pig populations Yoshitaka Nagamine, Ricardo Pong-Wong, Peter M Visscher, and Chris S Haley Genet Sel Evol. 2009; 41(1): 44. Published online 2009 October 6. doi: 10.1186/1297-9686-41-44.PMCID: PMC2762464 Mapping quantitative trait loci (QTL) in sheep. II. Meta-assembly and identification of novel QTL for milk production traits in sheep Herman W Raadsma, Elisabeth Jonas, David McGill, Matthew Hobbs, Mary K Lam, and Peter C Thomson Genet Sel Evol. 2009; 41(1): 45. Published online 2009 October 22. doi: 10.1186/1297-9686-41-45.PMCID: PMC2772855 Quantitative trait loci for resistance to trichostrongylid infection in Spanish Churra sheep Beatriz Gutiérrez-Gil, Jorge Pérez, Lorena Álvarez, Maria Martínez-Valladares, Luis-Fernando de la Fuente, Yolanda Bayón, Aranzazu Meana, Fermin San Primitivo, Francisco-Antonio Rojo-Vázquez, and Juan-José Arranz Genet Sel Evol. 2009; 41(1): 46. Published online 2009 October 28. doi: 10.1186/1297-9686-41-46.PMCID: PMC2776584 Inheritance of fertility in broiler chickens Anna Wolc, Ian MS White, Victor E Olori, and William G Hill Genet Sel Evol. 2009; 41(1): 47. Published online 2009 October 29. doi: 10.1186/1297-9686-41-47.PMCID: PMC2775730 Estimated breeding values and association mapping for persistency and total milk yield using natural cubic smoothing splines Klara L Verbyla and Arunas P Verbyla Genet Sel Evol. 2009; 41(1): 48. Published online 2009 November 5. doi: 10.1186/1297-9686-41-48.PMCID: PMC2785761 Assessing population genetic structure via the maximisation of genetic distance Silvia T Rodríguez-Ramilo, Miguel A Toro, and Jesús Fernández Genet Sel Evol. 2009; 41(1): 49. Published online 2009 November 9. doi: 10.1186/1297-9686-41-49.PMCID: PMC2776585 A fast algorithm for estimating transmission probabilities in QTL detection designs with dense maps Jean-Michel Elsen, Olivier Filangi, Hélène Gilbert, Pascale Le Roy, and Carole Moreno Genet Sel Evol. 2009; 41(1): 50. Published online 2009 November 17. doi: 10.1186/1297-9686-41-50.PMCID: PMC2793243 Accuracy of genomic breeding values in multi-breed dairy cattle populations Ben J Hayes, Phillip J Bowman, Amanda C Chamberlain, Klara Verbyla, and Mike E Goddard Genet Sel Evol. 2009; 41(1): 51. Published online 2009 November 24. doi: 10.1186/1297-9686-41-51.PMCID: PMC2791750 An efficient algorithm to compute marginal posterior genotype probabilities for every member of a pedigree with loops Liviu R Totir, Rohan L Fernando, and Joseph Abraham Genet Sel Evol. 2009; 41(1): 52. Published online 2009 December 3. doi: 10.1186/1297-9686-41-52.PMCID: PMC2801663 Persistence of accuracy of genome-wide breeding values over generations when including a polygenic effect Trygve R Solberg, Anna K Sonesson, John A Woolliams, Jørgen Ødegard, and Theo HE Meuwissen Genet Sel Evol. 2009; 41(1): 53. Published online 2009 December 29. doi: 10.1186/1297-9686-41-53.PMCID: PMC2813225 Traits associated with innate and adaptive immunity in pigs: heritability and associations with performance under different health status conditions Mary Clapperton, Abigail B Diack, Oswald Matika, Elizabeth J Glass, Christy D Gladney, Martha A Mellencamp, Annabelle Hoste, and Stephen C Bishop Genet Sel Evol. 2009; 41(1): 54. Published online 2009 December 30. doi: 10.1186/1297-9686-41-54.PMCID: PMC2807426 Deregressing estimated breeding values and weighting information for genomic regression analyses Dorian J Garrick, Jeremy F Taylor, and Rohan L Fernando Genet Sel Evol. 2009; 41(1): 55. Published online 2009 December 31. doi: 10.1186/1297-9686-41-55.PMCID: PMC2817680 A comparison of five methods to predict genomic breeding values of dairy bulls from genome-wide SNP markers Gerhard Moser, Bruce Tier, Ron E Crump, Mehar S Khatkar, and Herman W Raadsma Genet Sel Evol. 2009; 41(1): 56. Published online 2009 December 31. doi: 10.1186/1297-9686-41-56.PMCID: PMC2814805 Review Factor-analytic models for genotype × environment type problems and structured covariance matrices Karin Meyer Genet Sel Evol. 2009; 41(1): 21. Published online 2009 January 30. doi: 10.1186/1297-9686-41-21.PMCID: PMC2674411 Correction Genetic diversity of a large set of horse breeds raised in France assessed by microsatellite polymorphism Grégoire Leroy, Lucille Callède, Etienne Verrier, Jean-Claude Mériaux, Anne Ricard, Coralie Danchin-Burge, and Xavier Rognon Genet Sel Evol. 2009; 41(1): 31. Published online 2009 March 19. doi: 10.1186/1297-9686-41-31.PMCID: PMC2662794 Corrects: Grégoire Leroy, et al. Genetic diversity of a large set of horse breeds raised in France assessed by microsatellite polymorphism. Genet Sel Evol. 2009 January 5; 41: 5.
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