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Protein family review The SR protein family Peter J Shepard and Klemens J Hertel PMCID: PMC2784316 | Free in PMC on 2010/10/27 | Comment The dog days of autumn Gregory A Petsko PMCID: PMC2784313 | Free in PMC on 2010/11/04 | Minireviews Comparing cellular proteomes by mass spectrometry Florian Fröhlich and Tobias C Walther PMCID: PMC2784314 | Free in PMC on 2010/10/28 | Runaway repeats force expansion of the Phytophthora infestans genome Mark Gijzen PMCID: PMC2784315 | Free in PMC on 2010/10/27 | Meeting Report Watching proteins in motion Mary Munson and Daniel N Bolon PMCID: PMC2784317 | Free in PMC on 2010/10/27 | Method ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads Iain MacCallum, Dariusz Przybylski, Sante Gnerre, Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance P Shea, Louise Williams, Sarah Young, Chad Nusbaum, and David B Jaffe PMCID: PMC2784318 Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels Ian Sudbery, Jim Stalker, Jared T Simpson, Thomas Keane, Alistair G Rust, Matthew E Hurles, Klaudia Walter, Dee Lynch, Lydia Teboul, Steve D Brown, Heng Li, Zemin Ning, Joseph H Nadeau, Colleen M Croniger, Richard Durbin, and David J Adams PMCID: PMC2784327 Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts Joshua Z Levin, Michael F Berger, Xian Adiconis, Peter Rogov, Alexandre Melnikov, Timothy Fennell, Chad Nusbaum, Levi A Garraway, and Andreas Gnirke PMCID: PMC2784330 Enrichment of sequencing targets from the human genome by solution hybridization Ryan Tewhey, Masakazu Nakano, Xiaoyun Wang, Carlos Pabón-Peña, Barbara Novak, Angelica Giuffre, Eric Lin, Scott Happe, Doug N Roberts, Emily M LeProust, Eric J Topol, Olivier Harismendy, and Kelly A Frazer PMCID: PMC2784331 An optimization framework for unsupervised identification of rare copy number variation from SNP array data Gökhan Yavaş, Mehmet Koyutürk, Meral Özsoyoğlu, Meetha P Gould, and Thomas LaFramboise PMCID: PMC2784334 Software MethMarker: user-friendly design and optimization of gene-specific DNA methylation assays Peter Schüffler, Thomas Mikeska, Andreas Waha, Thomas Lengauer, and Christoph Bock PMCID: PMC2784320 A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome Cizhong Jiang and B Franklin Pugh PMCID: PMC2784324 Research Molecular networks involved in mouse cerebral corticogenesis and spatio-temporal regulation of Sox4 and Sox11 novel antisense transcripts revealed by transcriptome profiling King-Hwa Ling, Chelsee A Hewitt, Tim Beissbarth, Lavinia Hyde, Kakoli Banerjee, Pike-See Cheah, Ping Z Cannon, Christopher N Hahn, Paul Q Thomas, Gordon K Smyth, Seong-Seng Tan, Tim Thomas, and Hamish S Scott PMCID: PMC2784319 Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions Nicolas Corradi, Karen L Haag, Jean-François Pombert, Dieter Ebert, and Patrick J Keeling PMCID: PMC2784321 Defining the chromatin signature of inducible genes in T cells Pek S Lim, Kristine Hardy, Karen L Bunting, Lina Ma, Kaiman Peng, Xinxin Chen, and Mary F Shannon PMCID: PMC2784322 Genomic DNA k-mer spectra: models and modalities Benny Chor, David Horn, Nick Goldman, Yaron Levy, and Tim Massingham PMCID: PMC2784323 NeMeSys: a biological resource for narrowing the gap between sequence and function in the human pathogen Neisseria meningitidis Christophe Rusniok, David Vallenet, Stéphanie Floquet, Helen Ewles, Coralie Mouzé-Soulama, Daniel Brown, Aurélie Lajus, Carmen Buchrieser, Claudine Médigue, Philippe Glaser, and Vladimir Pelicic PMCID: PMC2784325 Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication Jeong-Hwan Mun, Soo-Jin Kwon, Tae-Jin Yang, Young-Joo Seol, Mina Jin, Jin-A Kim, Myung-Ho Lim, Jung Sun Kim, Seunghoon Baek, Beom-Soon Choi, Hee-Ju Yu, Dae-Soo Kim, Namshin Kim, Ki-Byung Lim, Soo-In Lee, Jang-Ho Hahn, Yong Pyo Lim, Ian Bancroft, and Beom-Seok Park PMCID: PMC2784326 Preferential binding of HIF-1 to transcriptionally active loci determines cell-type specific response to hypoxia Xiaobo Xia and Andrew L Kung PMCID: PMC2784328 Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell Peter von Dassow, Hiroyuki Ogata, Ian Probert, Patrick Wincker, Corinne Da Silva, Stéphane Audic, Jean-Michel Claverie, and Colomban de Vargas PMCID: PMC2784329 Simultaneous transcription of duplicated var2csa gene copies in individual Plasmodium falciparum parasites Kim JM Brolin, Ulf Ribacke, Sandra Nilsson, Johan Ankarklev, Kirsten Moll, Mats Wahlgren, and Qijun Chen PMCID: PMC2784332 Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations Tom M Conrad, Andrew R Joyce, M Kenyon Applebee, Christian L Barrett, Bin Xie, Yuan Gao, and Bernhard Ø Palsson PMCID: PMC2784333 Other Issues: Journal List
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