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Volume 16(1);  2015

Q and A

Muneesh Tewari
Genome Biol. 2015; 16(1): 47. Published online 2015 Feb 26. doi: 10.1186/s13059-015-0613-5
PMCID:
PMC4341870

Research Highlight

Ray Ming, Ching Man Wai
Genome Biol. 2015; 16(1): 27. Published online 2015 Jan 31. doi: 10.1186/s13059-015-0585-5
PMCID:
PMC4312463
Boxuan Simen Zhao, Chuan He
Genome Biol. 2015; 16(1): 43. Published online 2015 Feb 22. doi: 10.1186/s13059-015-0609-1
PMCID:
PMC4336730
Lida Derevnina, Richard W Michelmore
Genome Biol. 2015; 16(1): 44. Published online 2015 Mar 2. doi: 10.1186/s13059-015-0615-3
PMCID:
PMC4346120
Emma Whitelaw
Genome Biol. 2015; 16(1): 60. Published online 2015 Mar 27. doi: 10.1186/s13059-015-0626-0
PMCID:
PMC4375926

Comment

Deanna M Church, Valerie A Schneider, Karyn Meltz Steinberg, Michael C Schatz, Aaron R Quinlan, Chen-Shan Chin, Paul A Kitts, Bronwen Aken, Gabor T Marth, Michael M Hoffman, Javier Herrero, M Lisandra Zepeda Mendoza, Richard Durbin, Paul Flicek
Genome Biol. 2015; 16(1): 13. Published online 2015 Jan 24. doi: 10.1186/s13059-015-0587-3
PMCID:
PMC4305238

Method

Haibao Tang, Xingtan Zhang, Chenyong Miao, Jisen Zhang, Ray Ming, James C Schnable, Patrick S Schnable, Eric Lyons, Jianguo Lu
Genome Biol. 2015; 16(1): 3. Published online 2015 Jan 13. doi: 10.1186/s13059-014-0573-1
PMCID:
PMC4305236
Yuan Gao, Jinfeng Wang, Fangqing Zhao
Genome Biol. 2015; 16(1): 4. Published online 2015 Jan 13. doi: 10.1186/s13059-014-0571-3
PMCID:
PMC4316645
Benjamin J Kelly, James R Fitch, Yangqiu Hu, Donald J Corsmeier, Huachun Zhong, Amy N Wetzel, Russell D Nordquist, David L Newsom, Peter White
Genome Biol. 2015; 16(1): 6. Published online 2015 Jan 20. doi: 10.1186/s13059-014-0577-x
PMCID:
PMC4333267
Lynnette Fernandez-Cuesta, Ruping Sun, Roopika Menon, Julie George, Susanne Lorenz, Leonardo A Meza-Zepeda, Martin Peifer, Dennis Plenker, Johannes M Heuckmann, Frauke Leenders, Thomas Zander, Ilona Dahmen, Mirjam Koker, Jakob Schöttle, Roland T Ullrich, Janine Altmüller, Christian Becker, Peter Nürnberg, Henrik Seidel, Diana Böhm, Friederike Göke, Sascha Ansén, Prudence A Russell, Gavin M Wright, Zoe Wainer, Benjamin Solomon, Iver Petersen, Joachim H Clement, Jörg Sänger, Odd-Terje Brustugun, Åslaug Helland, Steinar Solberg, Marius Lund-Iversen, Reinhard Buettner, Jürgen Wolf, Elisabeth Brambilla, Martin Vingron, Sven Perner, Stefan A Haas, Roman K Thomas
Genome Biol. 2015; 16(1): 7. Published online 2015 Jan 5. doi: 10.1186/s13059-014-0558-0
PMCID:
PMC4300615
Idan Efroni, Pui-Leng Ip, Tal Nawy, Alison Mello, Kenneth D Birnbaum
Genome Biol. 2015; 16(1): 9. Published online 2015 Jan 22. doi: 10.1186/s13059-015-0580-x
PMCID:
PMC4354993
Olivier Gevaert, Robert Tibshirani, Sylvia K Plevritis
Genome Biol. 2015; 16(1): 17. Published online 2015 Jan 29. doi: 10.1186/s13059-014-0579-8
PMCID:
PMC4365533
Jarrod A Chapman, Martin Mascher, Aydın Buluç, Kerrie Barry, Evangelos Georganas, Adam Session, Veronika Strnadova, Jerry Jenkins, Sunish Sehgal, Leonid Oliker, Jeremy Schmutz, Katherine A Yelick, Uwe Scholz, Robbie Waugh, Jesse A Poland, Gary J Muehlbauer, Nils Stein, Daniel S Rokhsar
Genome Biol. 2015; 16(1): 26. Published online 2015 Jan 31. doi: 10.1186/s13059-015-0582-8
PMCID:
PMC4373400
Zheng Chang, Guojun Li, Juntao Liu, Yu Zhang, Cody Ashby, Deli Liu, Carole L Cramer, Xiuzhen Huang
Genome Biol. 2015; 16(1): 30. Published online 2015 Feb 11. doi: 10.1186/s13059-015-0596-2
PMCID:
PMC4342890
Jimin Song, Kevin C Chen
Genome Biol. 2015; 16(1): 33. Published online 2015 Feb 12. doi: 10.1186/s13059-015-0598-0
PMCID:
PMC4355146
Amit G Deshwar, Shankar Vembu, Christina K Yung, Gun Ho Jang, Lincoln Stein, Quaid Morris
Genome Biol. 2015; 16(1): 35. Published online 2015 Feb 13. doi: 10.1186/s13059-015-0602-8
PMCID:
PMC4359439
Ke Yuan, Thomas Sakoparnig, Florian Markowetz, Niko Beerenwinkel
Genome Biol. 2015; 16(1): 36. Published online 2015 Feb 13. doi: 10.1186/s13059-015-0592-6
PMCID:
PMC4359483
Benjamin Lehne, Alexander W Drong, Marie Loh, Weihua Zhang, William R Scott, Sian-Tsung Tan, Uzma Afzal, James Scott, Marjo-Riitta Jarvelin, Paul Elliott, Mark I McCarthy, Jaspal S Kooner, John C Chambers
Genome Biol. 2015; 16(1): 37. Published online 2015 Feb 15. doi: 10.1186/s13059-015-0600-x
PMCID:
PMC4365767
Rachel S Sealfon, Michael F Lin, Irwin Jungreis, Maxim Y Wolf, Manolis Kellis, Pardis C Sabeti
Genome Biol. 2015; 16(1): 38. Published online 2015 Feb 17. doi: 10.1186/s13059-015-0603-7
PMCID:
PMC4376164
Dimitrios V Vavoulis, Margherita Francescatto, Peter Heutink, Julian Gough
Genome Biol. 2015; 16(1): 39. Published online 2015 Feb 20. doi: 10.1186/s13059-015-0604-6
PMCID:
PMC4365804
Marco L Leung, Yong Wang, Jill Waters, Nicholas E Navin
Genome Biol. 2015; 16(1): 55. Published online 2015 Mar 25. doi: 10.1186/s13059-015-0616-2
PMCID:
PMC4373516

Software

Brian Tjaden
Genome Biol. 2015; 16(1): 1. Published online 2015 Jan 13. doi: 10.1186/s13059-014-0572-2
PMCID:
PMC4316799
Marina Lizio, Jayson Harshbarger, Hisashi Shimoji, Jessica Severin, Takeya Kasukawa, Serkan Sahin, Imad Abugessaisa, Shiro Fukuda, Fumi Hori, Sachi Ishikawa-Kato, Christopher J Mungall, Erik Arner, J Kenneth Baillie, Nicolas Bertin, Hidemasa Bono, Michiel de Hoon, Alexander D Diehl, Emmanuel Dimont, Tom C Freeman, Kaori Fujieda, Winston Hide, Rajaram Kaliyaperumal, Toshiaki Katayama, Timo Lassmann, Terrence F Meehan, Koro Nishikata, Hiromasa Ono, Michael Rehli, Albin Sandelin, Erik A Schultes, Peter AC ‘t Hoen, Zuotian Tatum, Mark Thompson, Tetsuro Toyoda, Derek W Wright, Carsten O Daub, Masayoshi Itoh, Piero Carninci, Yoshihide Hayashizaki, Alistair RR Forrest, Hideya Kawaji, the FANTOM consortium
Genome Biol. 2015; 16(1): 22. Published online 2015 Jan 5. doi: 10.1186/s13059-014-0560-6
PMCID:
PMC4310165

Open Letters

Lél Eöry, M Thomas P Gilbert, Cai Li, Bo Li, Alan Archibald, Bronwen L Aken, Guojie Zhang, Erich Jarvis, Paul Flicek, David W Burt
Genome Biol. 2015; 16(1): 21. Published online 2015 Jan 29. doi: 10.1186/s13059-015-0588-2
PMCID:
PMC4310197
Helga Thorvaldsdóttir, James T Robinson, Douglass Turner, Jill P Mesirov
Genome Biol. 2015; 16(1): 46. Published online 2015 Feb 26. doi: 10.1186/s13059-015-0595-3
PMCID:
PMC4342165
The FAANG Consortium, Leif Andersson, Alan L Archibald, Cynthia D Bottema, Rudiger Brauning, Shane C Burgess, Dave W Burt, Eduardo Casas, Hans H Cheng, Laura Clarke, Christine Couldrey, Brian P Dalrymple, Christine G Elsik, Sylvain Foissac, Elisabetta Giuffra, Martien A Groenen, Ben J Hayes, LuSheng S Huang, Hassan Khatib, James W Kijas, Heebal Kim, Joan K Lunney, Fiona M McCarthy, John C McEwan, Stephen Moore, Bindu Nanduri, Cedric Notredame, Yniv Palti, Graham S Plastow, James M Reecy, Gary A Rohrer, Elena Sarropoulou, Carl J Schmidt, Jeffrey Silverstein, Ross L Tellam, Michele Tixier-Boichard, Gwenola Tosser-Klopp, Christopher K Tuggle, Johanna Vilkki, Stephen N White, Shuhong Zhao, Huaijun Zhou
Genome Biol. 2015; 16(1): 57. Published online 2015 Mar 25. doi: 10.1186/s13059-015-0622-4
PMCID:
PMC4373242

Research

Lorenzo de la Rica, Antonio García-Gómez, Natalia R Comet, Javier Rodríguez-Ubreva, Laura Ciudad, Roser Vento-Tormo, Carlos Company, Damiana Álvarez-Errico, Mireia García, Carmen Gómez-Vaquero, Esteban Ballestar
Genome Biol. 2015; 16(1): 2. Published online 2015 Jan 5. doi: 10.1186/s13059-014-0561-5
PMCID:
PMC4290566
Sara Tomaselli, Federica Galeano, Shahar Alon, Susanna Raho, Silvia Galardi, Vinicia Assunta Polito, Carlo Presutti, Sara Vincenti, Eli Eisenberg, Franco Locatelli, Angela Gallo
Genome Biol. 2015; 16(1): 5. Published online 2015 Jan 13. doi: 10.1186/s13059-014-0575-z
PMCID:
PMC4326501
Miles C Benton, Alice Johnstone, David Eccles, Brennan Harmon, Mark T Hayes, Rod A Lea, Lyn Griffiths, Eric P Hoffman, Richard S Stubbs, Donia Macartney-Coxson
Genome Biol. 2015; 16(1): 8. Published online 2015 Jan 22. doi: 10.1186/s13059-014-0569-x
PMCID:
PMC4301800
Joseph Costello, Lydia M Castelli, William Rowe, Christopher J Kershaw, David Talavera, Sarah S Mohammad-Qureshi, Paul F G Sims, Christopher M Grant, Graham D Pavitt, Simon J Hubbard, Mark P Ashe
Genome Biol. 2015; 16(1): 10. Published online 2015 Jan 5. doi: 10.1186/s13059-014-0559-z
PMCID:
PMC4302535
Colm E Nestor, Raffaele Ottaviano, Diana Reinhardt, Hazel A Cruickshanks, Heidi K Mjoseng, Rhoanne C McPherson, Antonio Lentini, John P Thomson, Donncha S Dunican, Sari Pennings, Stephen M Anderton, Mikael Benson, Richard R Meehan
Genome Biol. 2015; 16(1): 11. Published online 2015 Feb 4. doi: 10.1186/s13059-014-0576-y
PMCID:
PMC4334405
Michael D Nowak, Giancarlo Russo, Ralph Schlapbach, Cuong Nguyen Huu, Michael Lenhard, Elena Conti
Genome Biol. 2015; 16(1): 12. Published online 2015 Jan 24. doi: 10.1186/s13059-014-0567-z
PMCID:
PMC4305239
Haoxuan Liu, Xiaohui Zhang, Ju Huang, Jian-Qun Chen, Dacheng Tian, Laurence D Hurst, Sihai Yang
Genome Biol. 2015; 16(1): 15. Published online 2015 Jan 2. doi: 10.1186/s13059-014-0566-0
PMCID:
PMC4305242
Sebastian Kurscheid, Pierre Bady, Davide Sciuscio, Ivana Samarzija, Tal Shay, Irene Vassallo, Wim V Criekinge, Roy T Daniel, Martin J van den Bent, Christine Marosi, Michael Weller, Warren P Mason, Eytan Domany, Roger Stupp, Mauro Delorenzi, Monika E Hegi
Genome Biol. 2015; 16(1): 16. Published online 2015 Jan 27. doi: 10.1186/s13059-015-0583-7
PMCID:
PMC4342872
Emilia L Lim, Diane L Trinh, David W Scott, Andy Chu, Martin Krzywinski, Yongjun Zhao, A Gordon Robertson, Andrew J Mungall, Jacqueline Schein, Merrill Boyle, Anja Mottok, Daisuke Ennishi, Nathalie A Johnson, Christian Steidl, Joseph M Connors, Ryan D Morin, Randy D Gascoyne, Marco A Marra
Genome Biol. 2015; 16(1): 18. Published online 2015 Jan 29. doi: 10.1186/s13059-014-0568-y
PMCID:
PMC4308918
Carolina Frankl-Vilches, Heiner Kuhl, Martin Werber, Sven Klages, Martin Kerick, Antje Bakker, Edivaldo HC de Oliveira, Christina Reusch, Floriana Capuano, Jakob Vowinckel, Stefan Leitner, Markus Ralser, Bernd Timmermann, Manfred Gahr
Genome Biol. 2015; 16(1): 19. Published online 2015 Jan 29. doi: 10.1186/s13059-014-0578-9
PMCID:
PMC4373106
Moran N Cabili, Margaret C Dunagin, Patrick D McClanahan, Andrew Biaesch, Olivia Padovan-Merhar, Aviv Regev, John L Rinn, Arjun Raj
Genome Biol. 2015; 16(1): 20. Published online 2015 Jan 29. doi: 10.1186/s13059-015-0586-4
PMCID:
PMC4369099
Amelia Hubbard, Clare M Lewis, Kentaro Yoshida, Ricardo H Ramirez-Gonzalez, Claude de Vallavieille-Pope, Jane Thomas, Sophien Kamoun, Rosemary Bayles, Cristobal Uauy, Diane GO Saunders
Genome Biol. 2015; 16(1): 23. Published online 2015 Feb 25. doi: 10.1186/s13059-015-0590-8
PMCID:
PMC4342793
Lam C Tsoi, Matthew K Iyer, Philip E Stuart, William R Swindell, Johann E Gudjonsson, Trilokraj Tejasvi, Mrinal K Sarkar, Bingshan Li, Jun Ding, John J Voorhees, Hyun M Kang, Rajan P Nair, Arul M Chinnaiyan, Goncalo R Abecasis, James T Elder
Genome Biol. 2015; 16(1): 24. Published online 2015 Jan 30. doi: 10.1186/s13059-014-0570-4
PMCID:
PMC4311508
Riccardo E Marioni, Sonia Shah, Allan F McRae, Brian H Chen, Elena Colicino, Sarah E Harris, Jude Gibson, Anjali K Henders, Paul Redmond, Simon R Cox, Alison Pattie, Janie Corley, Lee Murphy, Nicholas G Martin, Grant W Montgomery, Andrew P Feinberg, M Daniele Fallin, Michael L Multhaup, Andrew E Jaffe, Roby Joehanes, Joel Schwartz, Allan C Just, Kathryn L Lunetta, Joanne M Murabito, John M Starr, Steve Horvath, Andrea A Baccarelli, Daniel Levy, Peter M Visscher, Naomi R Wray, Ian J Deary
Genome Biol. 2015; 16(1): 25. Published online 2015 Jan 30. doi: 10.1186/s13059-015-0584-6
PMCID:
PMC4350614
Lise Pingault, Frédéric Choulet, Adriana Alberti, Natasha Glover, Patrick Wincker, Catherine Feuillet, Etienne Paux
Genome Biol. 2015; 16(1): 29. Published online 2015 Feb 10. doi: 10.1186/s13059-015-0601-9
PMCID:
PMC4355351
Iain Beehuat Tan, Simeen Malik, Kalpana Ramnarayanan, John R McPherson, Dan Liang Ho, Yuka Suzuki, Sarah Boonhsui Ng, Su Yan, Kiat Hon Lim, Dennis Koh, Chew Min Hoe, Chung Yip Chan, Rachel Ten, Brian KP Goh, Alexander YF Chung, Joanna Tan, Cheryl Xueli Chan, Su Ting Tay, Lezhava Alexander, Niranjan Nagarajan, Axel M Hillmer, Choon Leong Tang, Clarinda Chua, Bin Tean Teh, Steve Rozen, Patrick Tan
Genome Biol. 2015; 16(1): 32. Published online 2015 Feb 12. doi: 10.1186/s13059-015-0589-1
PMCID:
PMC4365969
Yu-Ning Wei, Hai-Yang Hu, Gang-Cai Xie, Ning Fu, Zhi-Bin Ning, Rong Zeng, Philipp Khaitovich
Genome Biol. 2015; 16(1): 41. Published online 2015 Feb 22. doi: 10.1186/s13059-015-0608-2
PMCID:
PMC4375924
Alastair Crisp, Chiara Boschetti, Malcolm Perry, Alan Tunnacliffe, Gos Micklem
Genome Biol. 2015; 16(1): 50. Published online 2015 Mar 13. doi: 10.1186/s13059-015-0607-3
PMCID:
PMC4358723
Khursheed Iqbal, Diana A Tran, Arthur X Li, Charles Warden, Angela Y Bai, Purnima Singh, Xiwei Wu, Gerd P Pfeifer, Piroska E Szabó
Genome Biol. 2015; 16(1): 59. Published online 2015 Mar 27. doi: 10.1186/s13059-015-0619-z
PMCID:
PMC4376074

Erratum

Sarah D Kocher, Cai Li, Wei Yang, Hao Tan, Soojin V Yi, Xingyu Yang, Hopi E Hoekstra, Guojie Zhang, Naomi E Pierce, Douglas W Yu
Genome Biol. 2015; 16(1): 34. Published online 2015 Feb 12. doi: 10.1186/s13059-014-0574-0
PMCID:
PMC4326530

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