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High Impact MoTo DB: A Metabolic Database for Tomato Aleel K. Grennan PMCID: PMC2785969 | Free in PMC on 2010/12/01 | On the Inside On the Inside Peter V. Minorsky PMCID: PMC2785993 | Free in PMC on 2010/12/01 | Scientific Correspondence The Debate on the Pathway of Starch Synthesis: A Closer Look at Low-Starch Mutants Lacking Plastidial Phosphoglucomutase Supports the Chloroplast-Localized Pathway Sebastian Streb, Barbara Egli, Simona Eicke, and Samuel C. Zeeman PMCID: PMC2785970 | Free in PMC on 2010/12/01 | Bioinformatics Plant MetGenMAP: An Integrative Analysis System for Plant Systems Biology Je-Gun Joung, Anthony M. Corbett, Shanna Moore Fellman, Denise M. Tieman, Harry J. Klee, James J. Giovannoni, and Zhangjun Fei PMCID: PMC2786002 Breakthrough Technologies Flexible Tools for Gene Expression and Silencing in Tomato Ana I. Fernandez, Nicolas Viron, Moftah Alhagdow, Mansour Karimi, Matthew Jones, Ziva Amsellem, Adrien Sicard, Anna Czerednik, Gerco Angenent, Donald Grierson, Sean May, Graham Seymour, Yuval Eshed, Martine Lemaire-Chamley, Christophe Rothan, and Pierre Hilson PMCID: PMC2785966 A Real-Time Fluorogenic Assay for the Visualization of Glycoside Hydrolase Activity in Planta Farid M. Ibatullin, Alicja Banasiak, Martin J. Baumann, Lionel Greffe, Junko Takahashi, Ewa J. Mellerowicz, and Harry Brumer PMCID: PMC2785991 In Situ Mapping of Nutrient Uptake in the Rhizosphere Using Nanoscale Secondary Ion Mass Spectrometry Peta L. Clode, Matt R. Kilburn, David L. Jones, Elizabeth A. Stockdale, John B. Cliff, III, Anke M. Herrmann, and Daniel V. Murphy PMCID: PMC2785960 Genome Analysis Genetic Resources for Maize Cell Wall Biology Bryan W. Penning, Charles T. Hunter, III, Reuben Tayengwa, Andrea L. Eveland, Christopher K. Dugard, Anna T. Olek, Wilfred Vermerris, Karen E. Koch, Donald R. McCarty, Mark F. Davis, Steven R. Thomas, Maureen C. McCann, and Nicholas C. Carpita PMCID: PMC2785990 Research Articles Biochemical Processes and Macromolecular Structures The Arabidopsis DCR Encoding a Soluble BAHD Acyltransferase Is Required for Cutin Polyester Formation and Seed Hydration Properties David Panikashvili, Jian Xin Shi, Lukas Schreiber, and Asaph Aharoni PMCID: PMC2785978 Deciphering Transcriptional and Metabolic Networks Associated with Lysine Metabolism during Arabidopsis Seed Development Ruthie Angelovici, Aaron Fait, Xiaohong Zhu, Jedrzej Szymanski, Ester Feldmesser, Alisdair R. Fernie, and Gad Galili PMCID: PMC2785976 Bioenergetics and Photosynthesis The Variegated Mutants Lacking Chloroplastic FtsHs Are Defective in D1 Degradation and Accumulate Reactive Oxygen Species Yusuke Kato, Eiko Miura, Kunio Ido, Kentaro Ifuku, and Wataru Sakamoto PMCID: PMC2785964 A Cytoplasmically Inherited Barley Mutant Is Defective in Photosystem I Assembly Due to a Temperature-Sensitive Defect in ycf3 Splicing Alejandra Mabel Landau, Heiko Lokstein, Henrik Vibe Scheller, Verónica Lainez, Sara Maldonado, and Alberto Raúl Prina PMCID: PMC2785965 | Free in PMC on 2010/12/01 | Effect of Rubisco Activase Deficiency on the Temperature Response of CO2 Assimilation Rate and Rubisco Activation State: Insights from Transgenic Tobacco with Reduced Amounts of Rubisco Activase Wataru Yamori and Susanne von Caemmerer PMCID: PMC2786000 Cell Biology and Signal Transduction Arabidopsis FAB1/PIKfyve Proteins Are Essential for Development of Viable Pollen Paul Whitley, Steven Hinz, and James Doughty PMCID: PMC2785992 | Free in PMC on 2010/12/01 | GTP Is Required for the Microtubule Catastrophe-Inducing Activity of MAP200, a Tobacco Homolog of XMAP215 Takahiro Hamada, Tomohiko J. Itoh, Takashi Hashimoto, Teruo Shimmen, and Seiji Sonobe PMCID: PMC2785961 | Free in PMC on 2010/12/01 | Peroxisomes Are Required for in Vivo Nitric Oxide Accumulation in the Cytosol following Salinity Stress of Arabidopsis Plants Francisco J. Corpas, Makoto Hayashi, Shoji Mano, Mikio Nishimura, and Juan B. Barroso PMCID: PMC2785999 The Association of the Arabidopsis Actin-Related Protein2/3 Complex with Cell Membranes Is Linked to Its Assembly Status But Not Its Activation Simeon O. Kotchoni, Taya Zakharova, Eileen L. Mallery, Jie Le, Salah El-Din El-Assal, and Daniel B. Szymanski PMCID: PMC2785977 Development and Hormone Action Untranslated Regions of a Mobile Transcript Mediate RNA Metabolism Anjan K. Banerjee, Tian Lin, and David J. Hannapel PMCID: PMC2785979 Phased Control of Expansin Activity during Leaf Development Identifies a Sensitivity Window for Expansin-Mediated Induction of Leaf Growth Jennifer Sloan, Andreas Backhaus, Robert Malinowski, Simon McQueen-Mason, and Andrew J. Fleming PMCID: PMC2786001 | Free in PMC on 2010/12/01 | Mechanical Stimuli Modulate Lateral Root Organogenesis Gregory L. Richter, Gabriele B. Monshausen, Alexandra Krol, and Simon Gilroy PMCID: PMC2785988 Petunia hybrida CAROTENOID CLEAVAGE DIOXYGENASE7 Is Involved in the Production of Negative and Positive Branching Signals in Petunia Revel S.M. Drummond, N. Marcela Martínez-Sánchez, Bart J. Janssen, Kerry R. Templeton, Joanne L. Simons, Brian D. Quinn, Sakuntala Karunairetnam, and Kimberley C. Snowden PMCID: PMC2785980 Distal Expression of knotted1 in Maize Leaves Leads to Reestablishment of Proximal/Distal Patterning and Leaf Dissection Julio Ramirez, Nathalie Bolduc, Damon Lisch, and Sarah Hake PMCID: PMC2785998 Expression of the Arabidopsis Mutant abi1 Gene Alters Abscisic Acid Sensitivity, Stomatal Development, and Growth Morphology in Gray Poplars Matthias Arend, Jörg-Peter Schnitzler, Barbara Ehlting, Robert Hänsch, Theo Lange, Heinz Rennenberg, Axel Himmelbach, Erwin Grill, and Jörg Fromm PMCID: PMC2785995 | Free in PMC on 2010/12/01 | Environmental Stress and Adaptation to Stress Altered Architecture and Enhanced Drought Tolerance in Rice via the Down-Regulation of Indole-3-Acetic Acid by TLD1/OsGH3.13 Activation Sheng-Wei Zhang, Chen-Hui Li, Jia Cao, Yong-Cun Zhang, Su-Qiao Zhang, Yu-Feng Xia, Da-Ye Sun, and Ying Sun PMCID: PMC2785973 | Free in PMC on 2010/12/01 | Upgrading Root Physiology for Stress Tolerance by Ectomycorrhizas: Insights from Metabolite and Transcriptional Profiling into Reprogramming for Stress Anticipation Zhi-Bin Luo, Dennis Janz, Xiangning Jiang, Cornelia Göbel, Henning Wildhagen, Yupeng Tan, Heinz Rennenberg, Ivo Feussner, and Andrea Polle PMCID: PMC2785981 The Impact of Water Deficiency on Leaf Cuticle Lipids of Arabidopsis Dylan K. Kosma, Brice Bourdenx, Amélie Bernard, Eugene P. Parsons, Shiyou Lü, Jérôme Joubès, and Matthew A. Jenks PMCID: PMC2785987 Specific Domain Structures Control Abscisic Acid-, Salicylic Acid-, and Stress-Mediated SIZ1 Phenotypes Mi Sun Cheong, Hyeong Cheol Park, Mi Ju Hong, Jiyoung Lee, Wonkyun Choi, Jing Bo Jin, Hans J. Bohnert, Sang Yeol Lee, Ray A. Bressan, and Dae-Jin Yun PMCID: PMC2785975 | Free in PMC on 2010/12/01 | Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing Li-Ching Hsieh, Shu-I. Lin, Arthur Chun-Chieh Shih, June-Wei Chen, Wei-Yi Lin, Ching-Ying Tseng, Wen-Hsiung Li, and Tzyy-Jen Chiou PMCID: PMC2785986 Genetics, Genomics, and Molecular Evolution Extensive Structural Renovation of Retrogenes in the Evolution of the Populus Genome Zhenglin Zhu, Yong Zhang, and Manyuan Long PMCID: PMC2785971 Multiple Biochemical and Morphological Factors Underlie the Production of Methylketones in Tomato Trichomes Imri Ben-Israel, Geng Yu, Michael B. Austin, Nazmul Bhuiyan, Michele Auldridge, Thuong Nguyen, Ines Schauvinhold, Joseph P. Noel, Eran Pichersky, and Eyal Fridman PMCID: PMC2785994 Nucleotide Polymorphism in the Wheat Transcriptional Activator Spa Influences Its Pattern of Expression and Has Pleiotropic Effects on Grain Protein Composition, Dough Viscoelasticity, and Grain Hardness Catherine Ravel, Pierre Martre, Isabelle Romeuf, Mireille Dardevet, Redouane El-Malki, Jacques Bordes, Nathalie Duchateau, Dominique Brunel, François Balfourier, and Gilles Charmet PMCID: PMC2785959 Plants Interacting with Other Organisms Enhanced Nodulation and Nitrogen Fixation in the Abscisic Acid Low-Sensitive Mutant enhanced nitrogen fixation1 of Lotus japonicus Akiyoshi Tominaga, Maki Nagata, Koichi Futsuki, Hidetoshi Abe, Toshiki Uchiumi, Mikiko Abe, Ken-ichi Kucho, Masatsugu Hashiguchi, Ryo Akashi, Ann M. Hirsch, Susumu Arima, and Akihiro Suzuki PMCID: PMC2785972 Identification of Defense Compounds in Barbarea vulgaris against the Herbivore Phyllotreta nemorum by an Ecometabolomic Approach Vera Kuzina, Claus Thorn Ekstrøm, Sven Bode Andersen, Jens Kvist Nielsen, Carl Erik Olsen, and Søren Bak PMCID: PMC2785962 | Free in PMC on 2010/12/01 | The Ectomycorrhizal Fungus Laccaria bicolor Stimulates Lateral Root Formation in Poplar and Arabidopsis through Auxin Transport and Signaling Judith Felten, Annegret Kohler, Emmanuelle Morin, Rishikesh P. Bhalerao, Klaus Palme, Francis Martin, Franck A. Ditengou, and Valérie Legué PMCID: PMC2785963 | Free in PMC on 2010/12/01 | An ABC Transporter Mutation Alters Root Exudation of Phytochemicals That Provoke an Overhaul of Natural Soil Microbiota Dayakar V. Badri, Naira Quintana, Elie G. El Kassis, Hye Kyong Kim, Young Hae Choi, Akifumi Sugiyama, Robert Verpoorte, Enrico Martinoia, Daniel K. Manter, and Jorge M. Vivanco PMCID: PMC2785968 Native Plant and Microbial Contributions to a Negative Plant-Plant Interaction Gurdeep Bains, Amutha Sampath Kumar, Thimmaraju Rudrappa, Emily Alff, Thomas E. Hanson, and Harsh P. Bais PMCID: PMC2785974 Airborne Induction and Priming of Plant Defenses against a Bacterial Pathogen Hwe-Su Yi, Martin Heil, Rosa M. Adame-Álvarez, Daniel J. Ballhorn, and Choong-Min Ryu PMCID: PMC2785983 Systems Biology, Molecular Biology, and Gene Regulation DkMyb4 Is a Myb Transcription Factor Involved in Proanthocyanidin Biosynthesis in Persimmon Fruit Takashi Akagi, Ayako Ikegami, Tomoyuki Tsujimoto, Shozo Kobayashi, Akihiko Sato, Atsushi Kono, and Keizo Yonemori PMCID: PMC2785967 The Phytochrome-Interacting Factor PIF7 Negatively Regulates DREB1 Expression under Circadian Control in Arabidopsis Satoshi Kidokoro, Kyonoshin Maruyama, Kazuo Nakashima, Yoshiyuki Imura, Yoshihiro Narusaka, Zabta K. Shinwari, Yuriko Osakabe, Yasunari Fujita, Junya Mizoi, Kazuo Shinozaki, and Kazuko Yamaguchi-Shinozaki PMCID: PMC2785984 Replication Protein A (RPA1a) Is Required for Meiotic and Somatic DNA Repair But Is Dispensable for DNA Replication and Homologous Recombination in Rice Yuxiao Chang, Liang Gong, Wenya Yuan, Xingwang Li, Guoxing Chen, Xianghua Li, Qifa Zhang, and Changyin Wu PMCID: PMC2785997 | Free in PMC on 2010/12/01 | A T9G Mutation in the Prototype TATA-Box TCACTATATATAG Determines Nucleosome Formation and Synergy with Upstream Activator Sequences in Plant Promoters Amol Ranjan, Suraiya A. Ansari, Rakesh Srivastava, Shrikant Mantri, Mehar H. Asif, Samir V. Sawant, and Rakesh Tuli PMCID: PMC2785982 | Free in PMC on 2010/12/01 | Whole Plant and Ecophysiology Stomatal Crypts Have Small Effects on Transpiration: A Numerical Model Analysis Anita Roth-Nebelsick, Foteini Hassiotou, and Erik J. Veneklaas PMCID: PMC2785996 | Free in PMC on 2010/12/01 | Corrections Plant Physiol. 2009 December; 151(4): 2187. doi: 10.1104/pp.109.900310.PMCID: PMC2785985 Corrects: Etienne H. Meyer, et al. Remodeled Respiration in ndufs4 with Low Phosphorylation Efficiency Suppresses Arabidopsis Germination and Growth and Alters Control of Metabolism at Night. Plant Physiol. 2009 October; 151(2): 603–619. Plant Physiol. 2009 December; 151(4): 2187. doi: 10.1104/pp.109.900310.PMCID: PMC2785989 Corrects: Etienne H. Meyer, et al. Remodeled Respiration in ndufs4 with Low Phosphorylation Efficiency Suppresses Arabidopsis Germination and Growth and Alters Control of Metabolism at Night. Plant Physiol. 2009 October; 151(2): 603–619. Other Issues: Journal List
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