|
|
Other Issues: Journal List
|
previous
|
next
|
latest
|
archive
Database TRUNCATULIX – a data warehouse for the legume community Kolja Henckel, Kai J Runte, Thomas Bekel, Michael Dondrup, Tobias Jakobi, Helge Küster, and Alexander Goesmann PMCID: PMC2654896 GarlicESTdb: an online database and mining tool for garlic EST sequences Dae-Won Kim, Tae-Sung Jung, Seong-Hyeuk Nam, Hyuk-Ryul Kwon, Aeri Kim, Sung-Hwa Chae, Sang-Haeng Choi, Dong-Wook Kim, Ryong Nam Kim, and Hong-Seog Park PMCID: PMC2689220 Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs Barbara Lazzari, Andrea Caprera, Alessandro Cestaro, Ivan Merelli, Marcello Del Corvo, Paolo Fontana, Luciano Milanesi, Riccardo Velasco, and Alessandra Stella PMCID: PMC2717091 The Hawaiian Algal Database: a laboratory LIMS and online resource for biodiversity data Norman Wang, Alison R Sherwood, Akira Kurihara, Kimberly Y Conklin, Thomas Sauvage, and Gernot G Presting PMCID: PMC2746215 MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family Olga Plechakova, Christine Tranchant-Dubreuil, Fabrice Benedet, Marie Couderc, Alexandra Tinaut, Véronique Viader, Petra De Block, Perla Hamon, Claudine Campa, Alexandre de Kochko, Serge Hamon, and Valérie Poncet PMCID: PMC2760556 Research article Phenotypic and fine genetic characterization of the D locus controlling fruit acidity in peach Karima Boudehri, Abdelhafid Bendahmane, Gaëlle Cardinet, Christelle Troadec, Annick Moing, and Elisabeth Dirlewanger PMCID: PMC2698847 Research Articles Transcript and proteomic analysis of developing white lupin (Lupinus albus L.) roots Li Tian, Gregory J Peel, Zhentian Lei, Naveed Aziz, Xinbin Dai, Ji He, Bonnie Watson, Patrick X Zhao, Lloyd W Sumner, and Richard A Dixon PMCID: PMC2630931 FORCA, a promoter element that responds to crosstalk between defense and light signaling Alexandre Evrard, Theogene Ndatimana, and Thomas Eulgem PMCID: PMC2640394 A multiple-method approach reveals a declining amount of chloroplast DNA during development in Arabidopsis Beth A Rowan, Delene J Oldenburg, and Arnold J Bendich PMCID: PMC2632658 Linkage mapping of putative regulator genes of barley grain development characterized by expression profiling Christof Pietsch, Nese Sreenivasulu, Ulrich Wobus, and Marion S Röder PMCID: PMC2648977 In planta localisation patterns of MADS domain proteins during floral development in Arabidopsis thaliana Susan L Urbanus, Stefan de Folter, Anna V Shchennikova, Kerstin Kaufmann, Richard GH Immink, and Gerco C Angenent PMCID: PMC2630930 Transcriptomic analysis of Arabidopsis developing stems: a close-up on cell wall genes Zoran Minic, Elisabeth Jamet, Hélène San-Clemente, Sandra Pelletier, Jean-Pierre Renou, Christophe Rihouey, Denis PO Okinyo, Caroline Proux, Patrice Lerouge, and Lise Jouanin PMCID: PMC2649120 Effective carbon partitioning driven by exotic phloem-specific regulatory elements fused to the Arabidopsis thaliana AtSUC2 sucrose-proton symporter gene Avinash C Srivastava, Savita Ganesan, Ihab O Ismail, and Brian G Ayre PMCID: PMC2654897 Evidence for separate translocation pathways in determining cadmium accumulation in grain and aerial plant parts in rice Takayuki Kashiwagi, Kumiko Shindoh, Naoki Hirotsu, and Ken Ishimaru PMCID: PMC2632998 Differential effectiveness of Serratia plymuthica IC1270-induced systemic resistance against hemibiotrophic and necrotrophic leaf pathogens in rice David De Vleesschauwer, Leonid Chernin, and Monica M Höfte PMCID: PMC2650696 Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis S Karen Gomez, Hélène Javot, Prasit Deewatthanawong, Ivone Torres-Jerez, Yuhong Tang, Elison B Blancaflor, Michael K Udvardi, and Maria J Harrison PMCID: PMC2649119 Expression of genes associated with carbohydrate metabolism in cotton stems and roots Earl W Taliercio, Gabriela Romano, Jodi Scheffler, and Brian G Ayre PMCID: PMC2639587 Improper excess light energy dissipation in Arabidopsis results in a metabolic reprogramming Martin Frenkel, Carsten Külheim, Hanna Johansson Jänkänpää, Oskar Skogström, Luca Dall'Osto, Jon Ågren, Roberto Bassi, Thomas Moritz, Jon Moen, and Stefan Jansson PMCID: PMC2656510 A consensus genetic map of sorghum that integrates multiple component maps and high-throughput Diversity Array Technology (DArT) markers Emma S Mace, Jean-Francois Rami, Sophie Bouchet, Patricia E Klein, Robert R Klein, Andrzej Kilian, Peter Wenzl, Ling Xia, Kirsten Halloran, and David R Jordan PMCID: PMC2671505 Construction of 12 EST libraries and characterization of a 12,226 EST dataset for chicory (Cichorium intybus) root, leaves and nodules in the context of carbohydrate metabolism investigation Nicolas Dauchot, Dominique Mingeot, Bénédicte Purnelle, Céline Muys, Bernard Watillon, Marc Boutry, and Pierre Van Cutsem PMCID: PMC2660907 Validation of candidate genes putatively associated with resistance to SCMV and MDMV in maize (Zea mays L.) by expression profiling Anna Użarowska, Giuseppe Dionisio, Barbara Sarholz, Hans-Peter Piepho, Mingliang Xu, Christina Rønn Ingvardsen, Gerhard Wenzel, and Thomas Lübberstedt PMCID: PMC2669481 Characterization and comparative analysis of HMW glutenin 1Ay alleles with differential expressions Qian-Tao Jiang, Yu-Ming Wei, Feng Wang, Ji-Rui Wang, Ze-Hong Yan, and You-Liang Zheng PMCID: PMC2667398 Gibberellin mediates daylength-controlled differentiation of vegetative meristems in strawberry (Fragaria × ananassa Duch) Timo Hytönen, Paula Elomaa, Thomas Moritz, and Olavi Junttila PMCID: PMC2653492 The extracellular EXO protein mediates cell expansion in Arabidopsis leaves Florian Schröder, Janina Lisso, Peggy Lange, and Carsten Müssig PMCID: PMC2661892 Phenotypic instability and epigenetic variability in a diploid potato of hybrid origin, Solanum ruiz-lealii Carlos F Marfil, Elsa L Camadro, and Ricardo W Masuelli PMCID: PMC2656509 Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes Romain Guyot, Marion de la Mare, Véronique Viader, Perla Hamon, Olivier Coriton, José Bustamante-Porras, Valérie Poncet, Claudine Campa, Serge Hamon, and Alexandre de Kochko PMCID: PMC2656508 Five QTL hotspots for yield in short rotation coppice bioenergy poplar: The Poplar Biomass Loci Anne M Rae, Nathaniel Robert Street, Kathryn Megan Robinson, Nicole Harris, and Gail Taylor PMCID: PMC2657785 Characterization of PR-10 genes from eight Betula species and detection of Bet v 1 isoforms in birch pollen Martijn F Schenk, Jan HG Cordewener, Antoine HP America, Wendy PC van't Westende, Marinus JM Smulders, and Luud JWJ Gilissen PMCID: PMC2671506 Genomic expression profiling of mature soybean (Glycine max) pollen Farzad Haerizadeh, Chui E Wong, Prem L Bhalla, Peter M Gresshoff, and Mohan B Singh PMCID: PMC2660330 The cinnamyl alcohol dehydrogenase gene family in Populus: phylogeny, organization, and expression Abdelali Barakat, Agnieszka Bagniewska-Zadworna, Alex Choi, Urmila Plakkat, Denis S DiLoreto, Priyadarshini Yellanki, and John E Carlson PMCID: PMC2662859 Regulation of callose synthase activity in situ in alamethicin-permeabilized Arabidopsis and tobacco suspension cells Mari Aidemark, Carl-Johan Andersson, Allan G Rasmusson, and Susanne Widell PMCID: PMC2667179 Differential patterns of reactive oxygen species and antioxidative mechanisms during atrazine injury and sucrose-induced tolerance in Arabidopsis thaliana plantlets Fanny Ramel, Cécile Sulmon, Matthieu Bogard, Ivan Couée, and Gwenola Gouesbet PMCID: PMC2661893 Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants Debra J Skinner and Charles S Gasser PMCID: PMC2664812 The isolation and mapping of a novel hydroxycinnamoyltransferase in the globe artichoke chlorogenic acid pathway Cinzia Comino, Alain Hehn, Andrea Moglia, Barbara Menin, Frédéric Bourgaud, Sergio Lanteri, and Ezio Portis PMCID: PMC2664813 A compatible interaction of Alternaria brassicicola with Arabidopsis thaliana ecotype DiG: evidence for a specific transcriptional signature Arup K Mukherjee, Sophie Lev, Shimon Gepstein, and Benjamin A Horwitz PMCID: PMC2664814 Comparative transcriptomic characterization of aluminum, sodium chloride, cadmium and copper rhizotoxicities in Arabidopsis thaliana Cheng-Ri Zhao, Takashi Ikka, Yoshiharu Sawaki, Yuriko Kobayashi, Yuji Suzuki, Takashi Hibino, Shigeru Sato, Nozomu Sakurai, Daisuke Shibata, and Hiroyuki Koyama PMCID: PMC2666732 Plant origin and ploidy influence gene expression and life cycle characteristics in an invasive weed Amanda K Broz, Daniel K Manter, Gillianne Bowman, Heinz Müller-Schärer, and Jorge M Vivanco PMCID: PMC2670832 Cbf genes of the Fr-A2 allele are differentially regulated between long-term cold acclimated crown tissue of freeze-resistant and – susceptible, winter wheat mutant lines Fedora Sutton, Ding-Geng Chen, Xijin Ge, and Don Kenefick PMCID: PMC2663559 Utility of EST-derived SSR in cultivated peanut (Arachis hypogaea L.) and Arachis wild species Xuanqiang Liang, Xiaoping Chen, Yanbin Hong, Haiyan Liu, Guiyuan Zhou, Shaoxiong Li, and Baozhu Guo PMCID: PMC2678122 A new genomic resource dedicated to wood formation in Eucalyptus David Rengel, Hélène San Clemente, Florence Servant, Nathalie Ladouce, Etienne Paux, Patrick Wincker, Arnaud Couloux, Pierre Sivadon, and Jacqueline Grima-Pettenati PMCID: PMC2670833 Phylogenetic analysis, subcellular localization, and expression patterns of RPD3/HDA1 family histone deacetylases in plants Malona V Alinsug, Chun-Wei Yu, and Keqiang Wu PMCID: PMC2671507 Plastid chaperonin proteins Cpn60α and Cpn60β are required for plastid division in Arabidopsis thaliana Kenji Suzuki, Hiromitsu Nakanishi, Joyce Bower, David W Yoder, Katherine W Osteryoung, and Shin-ya Miyagishima PMCID: PMC2670834 A linkage map for the B-genome of Arachis (Fabaceae) and its synteny to the A-genome Márcio C Moretzsohn, Andrea VG Barbosa, Dione MT Alves-Freitas, Cristiane Teixeira, Soraya CM Leal-Bertioli, Patrícia M Guimarães, Rinaldo W Pereira, Catalina R Lopes, Marcelo M Cavallari, José FM Valls, David J Bertioli, and Marcos A Gimenes PMCID: PMC2674605 Removing celiac disease-related gluten proteins from bread wheat while retaining technological properties: a study with Chinese Spring deletion lines Hetty C van den Broeck, Teun WJM van Herpen, Cees Schuit, Elma MJ Salentijn, Liesbeth Dekking, Dirk Bosch, Rob J Hamer, Marinus JM Smulders, Ludovicus JWJ Gilissen, and Ingrid M van der Meer PMCID: PMC2670835 Evolution of ribosomal DNA-derived satellite repeat in tomato genome Sung-Hwan Jo, Dal-Hoe Koo, Jihyun F Kim, Cheol-Goo Hur, Sanghyeob Lee, Tae-jin Yang, Suk-Yoon Kwon, and Doil Choi PMCID: PMC2679016 CO2 assimilation, ribulose-1,5-bisphosphate carboxylase/oxygenase, carbohydrates and photosynthetic electron transport probed by the JIP-test, of tea leaves in response to phosphorus supply Zheng-He Lin, Li-Song Chen, Rong-Bing Chen, Fang-Zhou Zhang, Huan-Xin Jiang, and Ning Tang PMCID: PMC2685392 Cloning of transgenic tobacco BY-2 cells; an efficient method to analyse and reduce high natural heterogeneity of transgene expression Eva Nocarova and Lukas Fischer PMCID: PMC2679017 Nanoparticle penetration and transport in living pumpkin plants: in situ subcellular identification Eduardo Corredor, Pilar S Testillano, María-José Coronado, Pablo González-Melendi, Rodrigo Fernández-Pacheco, Clara Marquina, M Ricardo Ibarra, Jesús M de la Fuente, Diego Rubiales, Alejandro Pérez-de-Luque, and María-Carmen Risueño PMCID: PMC2680855 Generation of Phaseolus vulgaris ESTs and investigation of their regulation upon Uromyces appendiculatus infection Sandra Thibivilliers, Trupti Joshi, Kimberly B Campbell, Brian Scheffler, Dong Xu, Bret Cooper, Henry T Nguyen, and Gary Stacey PMCID: PMC2684537 Transient effect of weak electromagnetic fields on calcium ion concentration in Arabidopsis thaliana Alexander Pazur and Valentina Rassadina PMCID: PMC2681476 Proteome analysis of Norway maple (Acer platanoides L.) seeds dormancy breaking and germination: influence of abscisic and gibberellic acids Tomasz A Pawłowski PMCID: PMC2688491 Integration of tomato reproductive developmental landmarks and expression profiles, and the effect of SUN on fruit shape Han Xiao, Cheryll Radovich, Nicholas Welty, Jason Hsu, Dongmei Li, Tea Meulia, and Esther van der Knaap PMCID: PMC2685393 A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences Martin Trick, Foo Cheung, Nizar Drou, Fiona Fraser, Edward K Lobenhofer, Patrick Hurban, Andreas Magusin, Christopher D Town, and Ian Bancroft PMCID: PMC2685394 Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection Abdelali Barakat, Denis S DiLoreto, Yi Zhang, Chris Smith, Kathleen Baier, William A Powell, Nicholas Wheeler, Ron Sederoff, and John E Carlson PMCID: PMC2688492 Serpin genes AtSRP2 and AtSRP3 are required for normal growth sensitivity to a DNA alkylating agent in Arabidopsis Joon-Woo Ahn, Brian J Atwell, and Thomas H Roberts PMCID: PMC2689219 Identification, characterization and utilization of unigene derived microsatellite markers in tea (Camellia sinensis L.) Ram Kumar Sharma, Pankaj Bhardwaj, Rinu Negi, Trilochan Mohapatra, and Paramvir Singh Ahuja PMCID: PMC2693106 Characterization of Vitis vinifera NPR1 homologs involved in the regulation of Pathogenesis-Related gene expression Gaëlle Le Henanff, Thierry Heitz, Pere Mestre, Jerôme Mutterer, Bernard Walter, and Julie Chong PMCID: PMC2686700 Cold- and light-induced changes in the transcriptome of wheat leading to phase transition from vegetative to reproductive growth Mark O Winfield, Chungui Lu, Ian D Wilson, Jane A Coghill, and Keith J Edwards PMCID: PMC2685395 Development-dependent changes in the tight DNA-protein complexes of barley on chromosome and gene level Tatjana Sjakste, Kristina Bielskiene, Marion Röder, Olga Sugoka, Danute Labeikyte, Lida Bagdoniene, Benediktas Juodka, Yegor Vassetzky, and Nikolajs Sjakste PMCID: PMC2694405 Construction of a consensus linkage map for red clover (Trifolium pratense L.) Sachiko Isobe, Roland Kölliker, Hiroshi Hisano, Shigemi Sasamoto, Tshyuko Wada, Irina Klimenko, Kenji Okumura, and Satoshi Tabata PMCID: PMC2695442 Bioaccumulation and toxicity of selenium compounds in the green alga Scenedesmus quadricauda Dáša Umysová, Milada Vítová, Irena Doušková, Kateřina Bišová, Monika Hlavová, Mária Čížková, Jiří Machát, Jiří Doucha, and Vilém Zachleder PMCID: PMC2695443 Characterization of two Arabidopsis thaliana acyltransferases with preference for lysophosphatidylethanolamine Kjell Stålberg, Ulf Ståhl, Sten Stymne, and John Ohlrogge PMCID: PMC2690597 Molecular characterisation and genetic mapping of candidate genes for qualitative disease resistance in perennial ryegrass (Lolium perenne L.) Peter M Dracatos, Noel OI Cogan, Timothy I Sawbridge, Anthony R Gendall, Kevin F Smith, German C Spangenberg, and John W Forster PMCID: PMC2694799 Molecular characterization of a rice mutator-phenotype derived from an incompatible cross-pollination reveals transgenerational mobilization of multiple transposable elements and extensive epigenetic instability Hongyan Wang, Yang Chai, Xiucheng Chu, Yunyang Zhao, Ying Wu, Jihong Zhao, Frédéric Ngezahayo, Chunming Xu, and Bao Liu PMCID: PMC2696445 In vivo reorganization of the actin cytoskeleton in leaves of Nicotiana tabacum L. transformed with plastin-GFP. Correlation with light-activated chloroplast responses Anna Anielska-Mazur, Tytus Bernaś, and Halina Gabryś PMCID: PMC2702303 Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array Sung-Hyun Kim, Prasanna R Bhat, Xinping Cui, Harkamal Walia, Jin Xu, Steve Wanamaker, Abdelbagi M Ismail, Clyde Wilson, and Timothy J Close PMCID: PMC2697985 Comparative genomic analysis and expression of the APETALA2-like genes from barley, wheat, and barley-wheat amphiploids Javier Gil-Humanes, Fernando Pistón, Antonio Martín, and Francisco Barro PMCID: PMC2700811 Transcriptomic analysis of tomato carpel development reveals alterations in ethylene and gibberellin synthesis during pat3/pat4 parthenocarpic fruit set Laura Pascual, Jose M Blanca, Joaquin Cañizares, and Fernado Nuez PMCID: PMC2700107 Identification and expression analysis of WRKY transcription factor genes in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments Bo Yang, Yuanqing Jiang, Muhammad H Rahman, Michael K Deyholos, and Nat NV Kav PMCID: PMC2698848 Isolation, identification and expression analysis of salt-induced genes in Suaeda maritima, a natural halophyte, using PCR-based suppression subtractive hybridization Binod B Sahu and Birendra P Shaw PMCID: PMC2702304 Fragments of the key flowering gene GIGANTEA are associated with helitron-type sequences in the Pooideae grass Lolium perenne Tim Langdon, Ann Thomas, Lin Huang, Kerrie Farrar, Julie King, and Ian Armstead PMCID: PMC2702305 Antenna complexes protect Photosystem I from Photoinhibition Alessandro Alboresi, Matteo Ballottari, Rainer Hienerwadel, Giorgio M Giacometti, and Tomas Morosinotto PMCID: PMC2704212 EST and EST-SSR marker resources for Iris Shunxue Tang, Rebecca A Okashah, Marie-Michele Cordonnier-Pratt, Lee H Pratt, Virgil Ed Johnson, Christopher A Taylor, Michael L Arnold, and Steven J Knapp PMCID: PMC2703627 Assess suitability of hydroaeroponic culture to establish tripartite symbiosis between different AMF species, beans, and rhizobia Fatma Tajini, Porntip Suriyakup, Hélène Vailhe, Jan Jansa, and Jean-Jacques Drevon PMCID: PMC2713235 The HaDREB2 transcription factor enhances basal thermotolerance and longevity of seeds through functional interaction with HaHSFA9 Concepción Almoguera, Pilar Prieto-Dapena, Juan Díaz-Martín, José M Espinosa, Raúl Carranco, and Juan Jordano PMCID: PMC2706249 Characterization and structural analysis of wild type and a non-abscission mutant at the development funiculus (Def) locus in Pisum sativum L Kwadwo Owusu Ayeh, YeonKyeong Lee, Mike J Ambrose, and Anne Kathrine Hvoslef-Eide PMCID: PMC2717967 Characterization and isolation of a T-DNA tagged banana promoter active during in vitro culture and low temperature stress Efrén Santos, Serge Remy, Els Thiry, Saskia Windelinckx, Rony Swennen, and László Sági PMCID: PMC2709630 Agrobacterium rhizogenes-mediated transformation of Superroot-derived Lotus corniculatus plants: a valuable tool for functional genomics Bo Jian, Wensheng Hou, Cunxiang Wu, Bin Liu, Wei Liu, Shikui Song, Yurong Bi, and Tianfu Han PMCID: PMC2708162 DNA ligase 1 deficient plants display severe growth defects and delayed repair of both DNA single and double strand breaks Wanda M Waterworth, Jaroslav Kozak, Claire M Provost, Clifford M Bray, Karel J Angelis, and Christopher E West PMCID: PMC2708163 On the road to diploidization? Homoeolog loss in independently formed populations of the allopolyploid Tragopogon miscellus (Asteraceae) Jennifer A Tate, Prashant Joshi, Kerry A Soltis, Pamela S Soltis, and Douglas E Soltis PMCID: PMC2708164 Phylogenetic analysis and molecular evolution of the dormancy associated MADS-box genes from peach Sergio Jiménez, Amy L Lawton-Rauh, Gregory L Reighard, Albert G Abbott, and Douglas G Bielenberg PMCID: PMC2713236 A membrane-bound matrix-metalloproteinase from Nicotiana tabacum cv. BY-2 is induced by bacterial pathogens Andreas Schiermeyer, Hanna Hartenstein, Manoj K Mandal, Burkhard Otte, Verena Wahner, and Stefan Schillberg PMCID: PMC2715019 Selection of reference genes for quantitative real-time PCR expression studies in the apomictic and sexual grass Brachiaria brizantha Érica Duarte Silveira, Márcio Alves-Ferreira, Larissa Arrais Guimarães, Felipe Rodrigues da Silva, and Vera Tavares de Campos Carneiro PMCID: PMC2717968 Identification, functional characterization and developmental regulation of sesquiterpene synthases from sunflower capitate glandular trichomes Jens C Göpfert, Gillian MacNevin, Dae-Kyun Ro, and Otmar Spring PMCID: PMC2715020 Profiling microRNA expression in Arabidopsis pollen using microRNA array and real-time PCR Carrie Chambers and Bin Shuai PMCID: PMC2715406 Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon John P Vogel, Metin Tuna, Hikmet Budak, Naxin Huo, Yong Q Gu, and Michael A Steinwand PMCID: PMC2719641 New sources of soybean seed meal and oil composition traits identified through TILLING Emily C Dierking and Kristin D Bilyeu PMCID: PMC2719642 A set of EST-SNPs for map saturation and cultivar identification in melon Wim Deleu, Cristina Esteras, Cristina Roig, Mireia González-To, Iria Fernández-Silva, Daniel Gonzalez-Ibeas, José Blanca, Miguel A Aranda, Pere Arús, Fernando Nuez, Antonio J Monforte, Maria Belén Picó, and Jordi Garcia-Mas PMCID: PMC2722630 Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice Frédéric Ngezahayo, Chunming Xu, Hongyan Wang, Lily Jiang, Jinsong Pang, and Bao Liu PMCID: PMC2715021 Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues Brian W Kram, Wayne W Xu, and Clay J Carter PMCID: PMC2720969 Identification of three wheat globulin genes by screening a Triticum aestivum BAC genomic library with cDNA from a diabetes-associated globulin Evelin Loit, Charles W Melnyk, Amanda J MacFarlane, Fraser W Scott, and Illimar Altosaar PMCID: PMC2729749 Interactions between cauliflower and Rhizoctonia anastomosis groups with different levels of aggressiveness Joke Pannecoucque and Monica Höfte PMCID: PMC2719643 Arabidopsis WRKY2 transcription factor mediates seed germination and postgermination arrest of development by abscisic acid Wenbo Jiang and Diqiu Yu PMCID: PMC2719644 Jasmonate-dependent plant defense restricts thrips performance and preference Hiroshi Abe, Takeshi Shimoda, Jun Ohnishi, Soichi Kugimiya, Mari Narusaka, Shigemi Seo, Yoshihiro Narusaka, Shinya Tsuda, and Masatomo Kobayashi PMCID: PMC2724403 Mass spectrometry analysis of the variants of histone H3 and H4 of soybean and their post-translational modifications Tao Wu, Tiezheng Yuan, Sau-Na Tsai, Chunmei Wang, Sai-Ming Sun, Hon-Ming Lam, and Sai-Ming Ngai PMCID: PMC2732622 Antagonistic actions of boron against inhibitory effects of aluminum toxicity on growth, CO2 assimilation, ribulose-1,5-bisphosphate carboxylase/oxygenase, and photosynthetic electron transport probed by the JIP-test, of Citrus grandis seedlings Huan-Xin Jiang, Ning Tang, Jin-Gui Zheng, and Li-Song Chen PMCID: PMC2731759 Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: Extending MapMan ontology for grapevine Ana Rotter, Céline Camps, Marc Lohse, Christian Kappel, Stefania Pilati, Matjaž Hren, Mark Stitt, Pierre Coutos-Thévenot, Claudio Moser, Björn Usadel, Serge Delrot, and Kristina Gruden PMCID: PMC2731041 Systemic acquired resistance in soybean is regulated by two proteins, Orthologous to Arabidopsis NPR1 Devinder Sandhu, I Made Tasma, Ryan Frasch, and Madan K Bhattacharyya PMCID: PMC2738679 Targeted isolation, sequence assembly and characterization of two white spruce (Picea glauca) BAC clones for terpenoid synthase and cytochrome P450 genes involved in conifer defence reveal insights into a conifer genome Björn Hamberger, Dawn Hall, Mack Yuen, Claire Oddy, Britta Hamberger, Christopher I Keeling, Carol Ritland, Kermit Ritland, and Jörg Bohlmann PMCID: PMC2729077 Comparative gene expression profiles between heterotic and non-heterotic hybrids of tetraploid Medicago sativa Xuehui Li, Yanling Wei, Dan Nettleton, and E Charles Brummer PMCID: PMC2736959 Modification of tobacco plant development by sense and antisense expression of the tomato viroid-induced AGC VIIIa protein kinase PKV suggests involvement in gibberellin signaling Rosemarie W Hammond and Yan Zhao PMCID: PMC2735738 Cloning and characterization of a glucosyltransferase from Crocus sativus stigmas involved in flavonoid glucosylation Ángela Rubio Moraga, Almudena Trapero Mozos, Oussama Ahrazem, and Lourdes Gómez-Gómez PMCID: PMC2736960 Recovery and characterization of a Citrus clementina Hort. ex Tan. 'Clemenules' haploid plant selected to establish the reference whole Citrus genome sequence Pablo Aleza, José Juárez, María Hernández, José A Pina, Patrick Ollitrault, and Luis Navarro PMCID: PMC2747335 Identification of candidate genome regions controlling disease resistance in Arachis Soraya CM Leal-Bertioli, Ana Carolina VF José, Dione MT Alves-Freitas, Márcio C Moretzsohn, Patrícia M Guimarães, Stephan Nielen, Bruna S Vidigal, Rinaldo W Pereira, Jodie Pike, Alessandra P Fávero, Martin Parniske, Rajeev K Varshney, and David J Bertioli PMCID: PMC2739205 Evaluation of protein pattern changes in roots and leaves of Zea mays plants in response to nitrate availability by two-dimensional gel electrophoresis analysis Bhakti Prinsi, Alfredo S Negri, Paolo Pesaresi, Maurizio Cocucci, and Luca Espen PMCID: PMC2744680 Mapping quantitative trait loci (QTLs) for fatty acid composition in an interspecific cross of oil palm Rajinder Singh, Soon G Tan, Jothi M Panandam, Rahimah Abdul Rahman, Leslie CL Ooi, Eng-Ti L Low, Mukesh Sharma, Johannes Jansen, and Suan-Choo Cheah PMCID: PMC2757029 Involvement of S-adenosylmethionine-dependent halide/thiol methyltransferase (HTMT) in methyl halide emissions from agricultural plants: isolation and characterization of an HTMT-coding gene from Raphanus sativus (daikon radish) Nobuya Itoh, Hiroshi Toda, Michiko Matsuda, Takashi Negishi, Tomokazu Taniguchi, and Noboru Ohsawa PMCID: PMC2752461 Gene-based microsatellites for cassava (Manihot esculenta Crantz): prevalence, polymorphisms, and cross-taxa utility Adebola AJ Raji, James V Anderson, Olufisayo A Kolade, Chike D Ugwu, Alfred GO Dixon, and Ivan L Ingelbrecht PMCID: PMC2758884 Distinct changes in soybean xylem sap proteome in response to pathogenic and symbiotic microbe interactions Senthil Subramanian, Un-Haing Cho, Carol Keyes, and Oliver Yu PMCID: PMC2758885 Characterization of WRKY co-regulatory networks in rice and Arabidopsis Stefano Berri, Pamela Abbruscato, Odile Faivre-Rampant, Ana CM Brasileiro, Irene Fumasoni, Kouji Satoh, Shoshi Kikuchi, Luca Mizzi, Piero Morandini, Mario Enrico Pè, and Pietro Piffanelli PMCID: PMC2761919 Isolation and functional characterization of cold-regulated promoters, by digitally identifying peach fruit cold-induced genes from a large EST dataset Andrés Tittarelli, Margarita Santiago, Andrea Morales, Lee A Meisel, and Herman Silva PMCID: PMC2754992 Identification of flowering genes in strawberry, a perennial SD plant Katriina Mouhu, Timo Hytönen, Kevin Folta, Marja Rantanen, Lars Paulin, Petri Auvinen, and Paula Elomaa PMCID: PMC2761920 Phenolic compounds in ectomycorrhizal interaction of lignin modified silver birch Suvi Sutela, Karoliina Niemi, Jaanika Edesi, Tapio Laakso, Pekka Saranpää, Jaana Vuosku, Riina Mäkelä, Heidi Tiimonen, Vincent L Chiang, Janne Koskimäki, Marja Suorsa, Riitta Julkunen-Tiitto, and Hely Häggman PMCID: PMC2763875 Sampling nucleotide diversity in cotton Allen Van Deynze, Kevin Stoffel, Mike Lee, Thea A Wilkins, Alexander Kozik, Roy G Cantrell, John Z Yu, Russel J Kohel, and David M Stelly PMCID: PMC2771027 Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and Poaceae François Fauteux and Martina V Strömvik PMCID: PMC2770497 Comparative transcriptional survey between laser-microdissected cells from laminar abscission zone and petiolar cortical tissue during ethylene-promoted abscission in citrus leaves Javier Agustí, Paz Merelo, Manuel Cercós, Francisco R Tadeo, and Manuel Talón PMCID: PMC2770498 Computational annotation of genes differentially expressed along olive fruit development Giulio Galla, Gianni Barcaccia, Angelo Ramina, Silvio Collani, Fiammetta Alagna, Luciana Baldoni, Nicolò GM Cultrera, Federico Martinelli, Luca Sebastiani, and Pietro Tonutti PMCID: PMC2774695 Pollen development in Annona cherimola Mill. (Annonaceae). Implications for the evolution of aggregated pollen Jorge Lora, Pilar S Testillano, Maria C Risueño, Jose I Hormaza, and Maria Herrero PMCID: PMC2774696 Vitamin B6 deficient plants display increased sensitivity to high light and photo-oxidative stress Michel Havaux, Brigitte Ksas, Agnieszka Szewczyk, Dominique Rumeau, Fabrice Franck, Stefano Caffarri, and Christian Triantaphylidès PMCID: PMC2777905 Methodology Articles A simple and high-sensitivity method for analysis of ubiquitination and polyubiquitination based on wheat cell-free protein synthesis Hirotaka Takahashi, Akira Nozawa, Motoaki Seki, Kazuo Shinozaki, Yaeta Endo, and Tatsuya Sawasaki PMCID: PMC2674041 A novel method for efficient and abundant production of Phytophthora brassicae zoospores on Brussels sprout leaf discs Klaas Bouwmeester and Francine Govers PMCID: PMC2752460 A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat Cristobal Uauy, Francine Paraiso, Pasqualina Colasuonno, Robert K Tran, Helen Tsai, Steve Berardi, Luca Comai, and Jorge Dubcovsky PMCID: PMC2748083 Correction Bioinformatic analysis of the CLE signaling peptide family Karsten Oelkers, Nicolas Goffard, Georg F Weiller, Peter M Gresshoff, Ulrike Mathesius, and Tancred Frickey PMCID: PMC2645403 Corrects: Karsten Oelkers, et al. Bioinformatic analysis of the CLE signaling peptide family. BMC Plant Biol. 2008; 8: 1. Other Issues: Journal List
|
previous
|
next
|
latest
|
archive
|
