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Volume 12;  2012

Research Articles

SSR markers in transcripts of genes linked to post-transcriptional and transcriptional regulatory functions during vegetative and reproductive development of Elaeis guineensis
Timothy John Tranbarger, Wanwisa Kluabmongkol, Duangjai Sangsrakru, Fabienne Morcillo, James W Tregear, Somvong Tragoonrung, Norbert Billotte
BMC Plant Biol. 2012; 12: 1. Published online 2012 January 3. doi: 10.1186/1471-2229-12-1
PMCID:
PMC3282652
Abstract Full Text PDF–1.8M Supplementary Material
The upregulation of thiamine (vitamin B1) biosynthesis in Arabidopsis thaliana seedlings under salt and osmotic stress conditions is mediated by abscisic acid at the early stages of this stress response
Maria Rapala-Kozik, Natalia Wolak, Marta Kujda, Agnieszka K Banas
BMC Plant Biol. 2012; 12: 2. Published online 2012 January 3. doi: 10.1186/1471-2229-12-2
PMCID:
PMC3261115
Abstract Full Text PDF–2.6M
Inter-and intraspecific variation in fern mating systems after long-distance colonization: the importance of selfing
G Arjen de Groot, Betty Verduyn, ER Jasper Wubs, Roy HJ Erkens, Heinjo J During
BMC Plant Biol. 2012; 12: 3. Published online 2012 January 4. doi: 10.1186/1471-2229-12-3
PMCID:
PMC3305374
Abstract Full Text PDF–1.0M Supplementary Material
Triacylglycerol synthesis by PDAT1 in the absence of DGAT1 activity is dependent on re-acylation of LPC by LPCAT2
Jingyu Xu, Anders S Carlsson, Tammy Francis, Meng Zhang, Travis Hoffman, Michael E Giblin, David C Taylor
BMC Plant Biol. 2012; 12: 4. Published online 2012 January 10. doi: 10.1186/1471-2229-12-4
PMCID:
PMC3310826
Abstract Full Text PDF–1.2M Supplementary Material
Analysis of ADP-glucose pyrophosphorylase expression during turion formation induced by abscisic acid in Spirodela polyrhiza (greater duckweed)
Wenqin Wang, Joachim Messing
BMC Plant Biol. 2012; 12: 5. Published online 2012 January 11. doi: 10.1186/1471-2229-12-5
PMCID:
PMC3268088
Abstract Full Text PDF–1.3M Supplementary Material
Arabidopsis plants grown in the field and climate chambers significantly differ in leaf morphology and photosystem components
Yogesh Mishra, Hanna Johansson Jänkänpää, Anett Z Kiss, Christiane Funk, Wolfgang P Schröder, Stefan Jansson
BMC Plant Biol. 2012; 12: 6. Published online 2012 January 11. doi: 10.1186/1471-2229-12-6
PMCID:
PMC3296669
Abstract Full Text PDF–4.2M Supplementary Material
Defects in leaf carbohydrate metabolism compromise acclimation to high light and lead to a high chlorophyll fluorescence phenotype in Arabidopsis thaliana
Jessica Schmitz, Mark Aurel Schöttler, Stephan Krueger, Stefan Geimer, Anja Schneider, Tatjana Kleine, Dario Leister, Kirsten Bell, Ulf-Ingo Flügge, Rainer E Häusler
BMC Plant Biol. 2012; 12: 8. Published online 2012 January 16. doi: 10.1186/1471-2229-12-8
PMCID:
PMC3353854
Abstract Full Text PDF–12M Supplementary Material
Integration of gene-based markers in a pearl millet genetic map for identification of candidate genes underlying drought tolerance quantitative trait loci
Deepmala Sehgal, Vengaldas Rajaram, Ian Peter Armstead, Vincent Vadez, Yash Pal Yadav, Charles Thomas Hash, Rattan Singh Yadav
BMC Plant Biol. 2012; 12: 9. Published online 2012 January 17. doi: 10.1186/1471-2229-12-9
PMCID:
PMC3287966
Abstract Full Text PDF–377K Supplementary Material
Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.)
Hui Wang, R Varma Penmetsa, Mei Yuan, Limin Gong, Yongli Zhao, Baozhu Guo, Andrew D Farmer, Benjamin D Rosen, Jinliang Gao, Sachiko Isobe, David J Bertioli, Rajeev K Varshney, Douglas R Cook, Guohao He
BMC Plant Biol. 2012; 12: 10. Published online 2012 January 19. doi: 10.1186/1471-2229-12-10
PMCID:
PMC3298471
Abstract Full Text PDF–527K Supplementary Material
Plasma membrane protein OsMCA1 is involved in regulation of hypo-osmotic shock-induced Ca2+ influx and modulates generation of reactive oxygen species in cultured rice cells
Takamitsu Kurusu, Daisuke Nishikawa, Yukari Yamazaki, Mariko Gotoh, Masataka Nakano, Haruyasu Hamada, Takuya Yamanaka, Kazuko Iida, Yuko Nakagawa, Hikaru Saji, Kazuo Shinozaki, Hidetoshi Iida, Kazuyuki Kuchitsu
BMC Plant Biol. 2012; 12: 11. Published online 2012 January 23. doi: 10.1186/1471-2229-12-11
PMCID:
PMC3313898
Abstract Full Text PDF–2.4M Supplementary Material
QTL and candidate gene mapping for polyphenolic composition in apple fruit
David Chagné, Célia Krieger, Maysoon Rassam, Mike Sullivan, Jenny Fraser, Christelle André, Massimo Pindo, Michela Troggio, Susan E Gardiner, Rebecca A Henry, Andrew C Allan, Tony K McGhie, William A Laing
BMC Plant Biol. 2012; 12: 12. Published online 2012 January 23. doi: 10.1186/1471-2229-12-12
PMCID:
PMC3285079
Abstract Full Text PDF–576K Supplementary Material
The role of the Arabidopsis FUSCA3 transcription factor during inhibition of seed germination at high temperature
Rex S Chiu, Hardeep Nahal, Nicholas J Provart, Sonia Gazzarrini
BMC Plant Biol. 2012; 12: 15. Published online 2012 January 27. doi: 10.1186/1471-2229-12-15
PMCID:
PMC3296646
Abstract Full Text PDF–3.9M Supplementary Material
Genome-wide association studies for agronomical traits in a world wide spring barley collection
Raj K Pasam, Rajiv Sharma, Marcos Malosetti, Fred A van Eeuwijk, Grit Haseneyer, Benjamin Kilian, Andreas Graner
BMC Plant Biol. 2012; 12: 16. Published online 2012 January 27. doi: 10.1186/1471-2229-12-16
PMCID:
PMC3349577
Abstract Full Text PDF–3.6M Supplementary Material
Characterization of a calcium/calmodulin-regulated SR/CAMTA gene family during tomato fruit development and ripening
Tianbao Yang, Hui Peng, Bruce D Whitaker, William S Conway
BMC Plant Biol. 2012; 12: 19. Published online 2012 February 13. doi: 10.1186/1471-2229-12-19
PMCID:
PMC3292969
Abstract Full Text PDF–667K Supplementary Material
Comparative transcriptome analysis of stylar canal cells identifies novel candidate genes implicated in the self-incompatibility response of Citrus clementina
Marco Caruso, Paz Merelo, Gaetano Distefano, Stefano La Malfa, Angela Roberta Lo Piero, Francisco R Tadeo, Manuel Talon, Alessandra Gentile
BMC Plant Biol. 2012; 12: 20. Published online 2012 February 14. doi: 10.1186/1471-2229-12-20
PMCID:
PMC3305554
Abstract Full Text PDF–15M Supplementary Material
Functional alleles of the flowering time regulator FRIGIDA in the Brassica oleracea genome
Judith A Irwin, Clare Lister, Eleni Soumpourou, Yanwen Zhang, Elaine C Howell, Graham Teakle, Caroline Dean
BMC Plant Biol. 2012; 12: 21. Published online 2012 February 14. doi: 10.1186/1471-2229-12-21
PMCID:
PMC3299615
Abstract Full Text PDF–4.9M
The cold-induced basic helix-loop-helix transcription factor gene MdCIbHLH1 encodes an ICE-like protein in apple
Xiao-Ming Feng, Qiang Zhao, Ling-Ling Zhao, Yu Qiao, Xing-Bin Xie, Hui-Feng Li, Yu-Xin Yao, Chun-Xiang You, Yu-Jin Hao
BMC Plant Biol. 2012; 12: 22. Published online 2012 February 15. doi: 10.1186/1471-2229-12-22
PMCID:
PMC3352023
Abstract Full Text PDF–4.5M Supplementary Material
AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes
Xuan Ma, Baomin Feng, Hong Ma
BMC Plant Biol. 2012; 12: 23. Published online 2012 February 15. doi: 10.1186/1471-2229-12-23
PMCID:
PMC3305669
Abstract Full Text PDF–1.1M Supplementary Material
Comprehensive analysis of tobacco pollen transcriptome unveils common pathways in polar cell expansion and underlying heterochronic shift during spermatogenesis
Said Hafidh, Katarína Breznenová, Petr Růžička, Jana Feciková, Věra Čapková, David Honys
BMC Plant Biol. 2012; 12: 24. Published online 2012 February 16. doi: 10.1186/1471-2229-12-24
PMCID:
PMC3305590
Abstract Full Text PDF–8.6M Supplementary Material
Fostered and left behind alleles in peanut: interspecific QTL mapping reveals footprints of domestication and useful natural variation for breeding
Daniel Fonceka, Hodo-Abalo Tossim, Ronan Rivallan, Hélène Vignes, Issa Faye, Ousmane Ndoye, Márcio C Moretzsohn, David J Bertioli, Jean-Christophe Glaszmann, Brigitte Courtois, Jean-François Rami
BMC Plant Biol. 2012; 12: 26. Published online 2012 February 17. doi: 10.1186/1471-2229-12-26
PMCID:
PMC3312858
Abstract Full Text PDF–472K Supplementary Material
Combinatorial analysis of lupulin gland transcription factors from R2R3Myb, bHLH and WDR families indicates a complex regulation of chs_H1 genes essential for prenylflavonoid biosynthesis in hop (Humulus Lupulus L.)
Jaroslav Matoušek, Tomáš Kocábek, Josef Patzak, Zoltán Füssy, Jitka Procházková, Arne Heyerick
BMC Plant Biol. 2012; 12: 27. Published online 2012 February 20. doi: 10.1186/1471-2229-12-27
PMCID:
PMC3340318
Abstract Full Text PDF–5.4M Supplementary Material
Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
She Tang, Yu Wang, Zefeng Li, Yijie Gui, Bingguang Xiao, Jiahua Xie, Qian-Hao Zhu, Longjiang Fan
BMC Plant Biol. 2012; 12: 28. Published online 2012 February 22. doi: 10.1186/1471-2229-12-28
PMCID:
PMC3306195
Abstract Full Text PDF–2.2M Supplementary Material
Bioinformatic identification of cassava miRNAs differentially expressed in response to infection by Xanthomonas axonopodis pv. manihotis
Álvaro L Pérez-Quintero, Andrés Quintero, Oscar Urrego, Pablo Vanegas, Camilo López
BMC Plant Biol. 2012; 12: 29. Published online 2012 February 23. doi: 10.1186/1471-2229-12-29
PMCID:
PMC3337288
Abstract Full Text PDF–600K Supplementary Material
Dissecting genetic architecture of grape proanthocyanidin composition through quantitative trait locus mapping
Yung-Fen Huang, Agnès Doligez, Alexandre Fournier-Level, Loïc Le Cunff, Yves Bertrand, Aurélie Canaguier, Cécile Morel, Valérie Miralles, Frédéric Veran, Jean-Marc Souquet, Véronique Cheynier, Nancy Terrier, Patrice This
BMC Plant Biol. 2012; 12: 30. Published online 2012 February 27. doi: 10.1186/1471-2229-12-30
PMCID:
PMC3312867
Abstract Full Text PDF–461K Supplementary Material
Coffee cysteine proteinases and related inhibitors with high expression during grain maturation and germination
Maud Lepelley, Mohamed Ben Amor, Nelly Martineau, Gerald Cheminade, Victoria Caillet, James McCarthy
BMC Plant Biol. 2012; 12: 31. Published online 2012 March 1. doi: 10.1186/1471-2229-12-31
PMCID:
PMC3311568
Abstract Full Text PDF–604K Supplementary Material
Betalain production is possible in anthocyanin-producing plant species given the presence of DOPA-dioxygenase and L-DOPA
Nilangani N Harris, John Javellana, Kevin M Davies, David H Lewis, Paula E Jameson, Simon C Deroles, Kate E Calcott, Kevin S Gould, Kathy E Schwinn
BMC Plant Biol. 2012; 12: 34. Published online 2012 March 12. doi: 10.1186/1471-2229-12-34
PMCID:
PMC3317834
Abstract Full Text PDF–8.1M Supplementary Material
Proteomic characterisation of endoplasmic reticulum-derived protein bodies in tobacco leaves
Minu Joseph, M Dolors Ludevid, Margarita Torrent, Valérie Rofidal, Marc Tauzin, Michel Rossignol, Jean-Benoit Peltier
BMC Plant Biol. 2012; 12: 36. Published online 2012 March 16. doi: 10.1186/1471-2229-12-36
PMCID:
PMC3342223
Abstract Full Text PDF–1.8M Supplementary Material
Functional interconnections of HY1 with MYC2 and HY5 in Arabidopsis seedling development
Babu Rajendra V Prasad, Selva V Kumar, Ashis Nandi, Sudip Chattopadhyay
BMC Plant Biol. 2012; 12: 37. Published online 2012 March 17. doi: 10.1186/1471-2229-12-37
PMCID:
PMC3353174
Abstract Full Text PDF–2.4M
Differential effects of environment on potato phenylpropanoid and carotenoid expression
Raja S Payyavula, Duroy A Navarre, Joseph C Kuhl, Alberto Pantoja, Syamkumar S Pillai
BMC Plant Biol. 2012; 12: 39. Published online 2012 March 20. doi: 10.1186/1471-2229-12-39
PMCID:
PMC3342224
Abstract Full Text PDF–2.3M Supplementary Material
The mitochondrial alternative oxidase pathway protects the photosynthetic apparatus against photodamage in Rumex K-1 leaves
Li-Tao Zhang, Zi-Shan Zhang, Hui-Yuan Gao, Xiang-Long Meng, Cheng Yang, Jian-Guo Liu, Qing-Wei Meng
BMC Plant Biol. 2012; 12: 40. Published online 2012 March 20. doi: 10.1186/1471-2229-12-40
PMCID:
PMC3355048
Abstract Full Text PDF–2.4M
Identification of expressed resistance gene-like sequences by data mining in 454-derived transcriptomic sequences of common bean (Phaseolus vulgaris L.)
Zhanji Liu, Mollee Crampton, Antonette Todd, Venu Kalavacharla
BMC Plant Biol. 2012; 12: 42. Published online 2012 March 23. doi: 10.1186/1471-2229-12-42
PMCID:
PMC3353201
Abstract Full Text PDF–316K Supplementary Material
A quadruple mutant of Arabidopsis reveals a β-carotene hydroxylation activity for LUT1/CYP97C1 and a regulatory role of xanthophylls on determination of the PSI/PSII ratio
Alessia Fiore, Luca Dall'Osto, Stefano Cazzaniga, Gianfranco Diretto, Giovanni Giuliano, Roberto Bassi
BMC Plant Biol. 2012; 12: 50. Published online 2012 April 18. doi: 10.1186/1471-2229-12-50
PMCID:
PMC3349566
Abstract Full Text PDF–10M Supplementary Material
Transcriptome analysis of stem development in the tumourous stem mustard Brassica juncea var. tumida Tsen et Lee by RNA sequencing
Quan Sun, Guanfan Zhou, Yingfan Cai, Yonghong Fan, Xiaoyan Zhu, Yihua Liu, Xiaohong He, Jinjuan Shen, Huaizhong Jiang, Daiwen Hu, Zheng Pan, Liuxin Xiang, Guanghua He, Daiwen Dong, Jianping Yang
BMC Plant Biol. 2012; 12: 53. Published online 2012 April 21. doi: 10.1186/1471-2229-12-53
PMCID:
PMC3349559
Abstract Full Text PDF–1.5M Supplementary Material

Methodology Articles

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat
Martin Trick, Nikolai Maria Adamski, Sarah G Mugford, Cong-Cong Jiang, Melanie Febrer, Cristobal Uauy
BMC Plant Biol. 2012; 12: 14. Published online 2012 January 26. doi: 10.1186/1471-2229-12-14
PMCID:
PMC3296661
Abstract Full Text PDF–1.7M Supplementary Material
Microsatellite allele dose and configuration establishment (MADCE): an integrated approach for genetic studies in allopolyploids
Thijs van Dijk, Yolanda Noordijk, Tiphaine Dubos, Marco CAM Bink, Bert J Meulenbroek, Richard GF Visser, Eric van de Weg
BMC Plant Biol. 2012; 12: 25. Published online 2012 February 17. doi: 10.1186/1471-2229-12-25
PMCID:
PMC3338383
Abstract Full Text PDF–568K Supplementary Material
Articles from BMC Plant Biology are provided here courtesy of BioMed Central
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