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Volume 10;  2009
Research article
Functional characterization of two CITED3 homologs (gcCITED3a and gcCITED3b) in the hypoxia-tolerant grass carp, Ctenopharyngodon idellus
Patrick KS Ng, Sung-Kay Chiu, Theresa FN Kwong, Richard MK Yu, Minnie ML Wong, and Richard YC Kong
BMC Mol Biol. 2009; 10: 101. Published online 2009 November 3. doi: 10.1186/1471-2199-10-101.
PMCID: PMC2780419
The sterol carrier protein 2/3-oxoacyl-CoA thiolase (SCPx) is involved in cholesterol uptake in the midgut of Spodoptera litura: gene cloning, expression, localization and functional analyses
Xing-Rong Guo, Si-Chun Zheng, Lin Liu, and Qi-Li Feng
BMC Mol Biol. 2009; 10: 102. Published online 2009 November 13. doi: 10.1186/1471-2199-10-102.
PMCID: PMC2779813
Research Articles
Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions
Carla F Barsalobres-Cavallari, Fábio E Severino, Mirian P Maluf, and Ivan G Maia
BMC Mol Biol. 2009; 10: 1. Published online 2009 January 6. doi: 10.1186/1471-2199-10-1.
PMCID: PMC2629470
Identification of novel Bach2 transcripts and protein isoforms through tagging analysis of retroviral integrations in B-cell lymphomas
Jinghua Liu, Annette Balle Sørensen, Bruce Wang, Matthias Wabl, Anders Lade Nielsen, and Finn Skou Pedersen
BMC Mol Biol. 2009; 10: 2. Published online 2009 January 21. doi: 10.1186/1471-2199-10-2.
PMCID: PMC2635362
Identification of two proteins that interact with the Erp virulence factor from Mycobacterium tuberculosis by using the bacterial two-hybrid system
Laura I Klepp, Marcelo Soria, Federico C Blanco, María V Bianco, María P Santangelo, Angel A Cataldi, and Fabiana Bigi
BMC Mol Biol. 2009; 10: 3. Published online 2009 January 21. doi: 10.1186/1471-2199-10-3.
PMCID: PMC2639381
Activation of mRNA translation by phage protein and low temperature: the case of Lactococcus lactis abortive infection system AbiD1
Elena Bidnenko, Alain Chopin, S Dusko Ehrlich, and Marie-Christine Chopin
BMC Mol Biol. 2009; 10: 4. Published online 2009 January 27. doi: 10.1186/1471-2199-10-4.
PMCID: PMC2661086
A noncoding RNA gene on chromosome 10p15.3 may function upstream of hTERT
Norimasa Miura, Reina Sato, Tomoe Tsukamoto, Mika Shimizu, Hiroko Kabashima, Miho Takeda, Shunsaku Takahashi, Tomomi Harada, James E West, Harry Drabkin, Jose E Mejia, Goshi Shiota, Yoshikazu Murawaki, Arvind Virmani, Adi F Gazdar, Mitsuo Oshimura, and Junichi Hasegawa
BMC Mol Biol. 2009; 10: 5. Published online 2009 February 2. doi: 10.1186/1471-2199-10-5.
PMCID: PMC2661890
Multiple RNAs from the mouse carboxypeptidase M locus: functional RNAs or transcription noise?
Alessander O Guimarães, Fabiana L Motta, Viviane S Alves, Beatriz A Castilho, and João B Pesquero
BMC Mol Biol. 2009; 10: 7. Published online 2009 February 8. doi: 10.1186/1471-2199-10-7.
PMCID: PMC2644694
Influence of vector design and host cell on the mechanism of recombination and emergence of mutant subpopulations of replicating retroviral vectors
Matthias Paar, Dieter Klein, Brian Salmons, Walter H Günzburg, Matthias Renner, and Daniel Portsmouth
BMC Mol Biol. 2009; 10: 8. Published online 2009 February 9. doi: 10.1186/1471-2199-10-8.
PMCID: PMC2645402
Spinocerebellar ataxia type 8 larger triplet expansion alters histone modification and induces RNA foci
I-Cheng Chen, Hsuan-Yuan Lin, Ghin-Chueh Lee, Shih-Huan Kao, Chiung-Mei Chen, Yih-Ru Wu, Hsiu-Mei Hsieh-Li, Ming-Tsan Su, and Guey-Jen Lee-Chen
BMC Mol Biol. 2009; 10: 9. Published online 2009 February 10. doi: 10.1186/1471-2199-10-9.
PMCID: PMC2647542
Removal of Hsf4 leads to cataract development in mice through down-regulation of γS-crystallin and Bfsp expression
Xiaohe Shi, Bin Cui, Zhugang Wang, Lin Weng, Zhongping Xu, Jinjin Ma, Guotong Xu, Xiangyin Kong, and Landian Hu
BMC Mol Biol. 2009; 10: 10. Published online 2009 February 19. doi: 10.1186/1471-2199-10-10.
PMCID: PMC2653017
Identification and validation of reference genes for quantitative RT-PCR normalization in wheat
Anna R Paolacci, Oronzo A Tanzarella, Enrico Porceddu, and Mario Ciaffi
BMC Mol Biol. 2009; 10: 11. Published online 2009 February 20. doi: 10.1186/1471-2199-10-11.
PMCID: PMC2667184
Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells
Yuliang Tan, Bo Zhang, Tao Wu, Geir Skogerbø, Xiaopeng Zhu, Xiangqian Guo, Shunmin He, and Runsheng Chen
BMC Mol Biol. 2009; 10: 12. Published online 2009 February 22. doi: 10.1186/1471-2199-10-12.
PMCID: PMC2680403
Sex-different and growth hormone-regulated expression of microRNA in rat liver
Louisa Cheung, Carolina Gustavsson, Gunnar Norstedt, and Petra Tollet-Egnell
BMC Mol Biol. 2009; 10: 13. Published online 2009 February 23. doi: 10.1186/1471-2199-10-13.
PMCID: PMC2654566
Expansion of a chromosomal repeat in Escherichia coli: roles of replication, repair, and recombination functions
Anthony R Poteete
BMC Mol Biol. 2009; 10: 14. Published online 2009 February 23. doi: 10.1186/1471-2199-10-14.
PMCID: PMC2656507
Genetic correction of splice site mutation in purified and enriched myoblasts isolated from mdx5cv mice
Katie Maguire, Takayuki Suzuki, Darlise DiMatteo, Hetal Parekh-Olmedo, and Eric Kmiec
BMC Mol Biol. 2009; 10: 15. Published online 2009 February 23. doi: 10.1186/1471-2199-10-15.
PMCID: PMC2654480
Binding of PFOS to serum albumin and DNA: insight into the molecular toxicity of perfluorochemicals
Xian Zhang, Ling Chen, Xun-Chang Fei, Yin-Sheng Ma, and Hong-Wen Gao
BMC Mol Biol. 2009; 10: 16. Published online 2009 February 25. doi: 10.1186/1471-2199-10-16.
PMCID: PMC2656506
Discriminating nucleosomes containing histone H2A.Z or H2A based on genetic and epigenetic information
Alain L Gervais and Luc Gaudreau
BMC Mol Biol. 2009; 10: 18. Published online 2009 March 4. doi: 10.1186/1471-2199-10-18.
PMCID: PMC2660331
The characterization of DNA methylation-mediated regulation of bovine placental lactogen and bovine prolactin-related protein-1 genes
Yuki Nakaya, Keiichiro Kizaki, Toru Takahashi, Osman V Patel, and Kazuiyoshi Hashizume
BMC Mol Biol. 2009; 10: 19. Published online 2009 March 5. doi: 10.1186/1471-2199-10-19.
PMCID: PMC2666728
Time course analysis of RNA stability in human placenta
Isabelle Fajardy, Emmanuelle Moitrot, Anne Vambergue, Maryse Vandersippe-Millot, Philippe Deruelle, and Jean Rousseaux
BMC Mol Biol. 2009; 10: 21. Published online 2009 March 10. doi: 10.1186/1471-2199-10-21.
PMCID: PMC2664811
A family of splice variants of CstF-64 expressed in vertebrate nervous systems
Ganesh S Shankarling, Penelope W Coates, Brinda Dass, and Clinton C MacDonald
BMC Mol Biol. 2009; 10: 22. Published online 2009 March 12. doi: 10.1186/1471-2199-10-22.
PMCID: PMC2660332
A functional type I topoisomerase from Pseudomonas aeruginosa
Teesta Jain, Benjamin J Roper, and Anne Grove
BMC Mol Biol. 2009; 10: 23. Published online 2009 March 24. doi: 10.1186/1471-2199-10-23.
PMCID: PMC2666729
HMGB1/2 can target DNA for illegitimate cleavage by the RAG1/2 complex
Ming Zhang and Patrick C Swanson
BMC Mol Biol. 2009; 10: 24. Published online 2009 March 24. doi: 10.1186/1471-2199-10-24.
PMCID: PMC2666730
Identification and characterization of a POU transcription factor in the cotton bollworm, Helicoverpa armigera
Tian-Yi Zhang and Wei-Hua Xu
BMC Mol Biol. 2009; 10: 25. Published online 2009 March 25. doi: 10.1186/1471-2199-10-25.
PMCID: PMC2672083
Evidence of a tick RNAi pathway by comparative genomics and reverse genetics screen of targets with known loss-of-function phenotypes in Drosophila
Sebastian Kurscheid, Ala E Lew-Tabor, Manuel Rodriguez Valle, Anthea G Bruyeres, Vivienne J Doogan, Ulrike G Munderloh, Felix D Guerrero, Roberto A Barrero, and Matthew I Bellgard
BMC Mol Biol. 2009; 10: 26. Published online 2009 March 26. doi: 10.1186/1471-2199-10-26.
PMCID: PMC2676286
Functional characterization and identification of mouse Rad51d splice variants
Aaron M Gruver, Brian D Yard, Campbell McInnes, Changanamkandath Rajesh, and Douglas L Pittman
BMC Mol Biol. 2009; 10: 27. Published online 2009 March 27. doi: 10.1186/1471-2199-10-27.
PMCID: PMC2667185
Co-regulated expression of HAND2 and DEIN by a bidirectional promoter with asymmetrical activity in neuroblastoma
Harald Voth, André Oberthuer, Thorsten Simon, Yvonne Kahlert, Frank Berthold, and Matthias Fischer
BMC Mol Biol. 2009; 10: 28. Published online 2009 April 6. doi: 10.1186/1471-2199-10-28.
PMCID: PMC2670301
Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor
Botao Zhao, Liangfa Ge, Ruqiang Liang, Wei Li, Kangcheng Ruan, Hongxuan Lin, and Youxin Jin
BMC Mol Biol. 2009; 10: 29. Published online 2009 April 8. doi: 10.1186/1471-2199-10-29.
PMCID: PMC2670843
A novel liver specific isoform of the rat LAR transcript is expressed as a truncated isoform encoded from a 5'UTR located within intron 11
Simon JM Welham, Adrian JL Clark, and Andrew M Salter
BMC Mol Biol. 2009; 10: 30. Published online 2009 April 8. doi: 10.1186/1471-2199-10-30.
PMCID: PMC2674045
Requirements for E1A dependent transcription in the yeast Saccharomyces cerevisiae
Ahmed F Yousef, Christopher J Brandl, and Joe S Mymryk
BMC Mol Biol. 2009; 10: 32. Published online 2009 April 17. doi: 10.1186/1471-2199-10-32.
PMCID: PMC2674444
The zinc finger protein Zn72D and DEAD box helicase Belle interact and control maleless mRNA and protein levels
Kathleen A Worringer, Feixia Chu, and Barbara Panning
BMC Mol Biol. 2009; 10: 33. Published online 2009 April 22. doi: 10.1186/1471-2199-10-33.
PMCID: PMC2680859
Use of the λ Red-recombineering method for genetic engineering of Pantoea ananatis
Joanna I Katashkina, Yoshihiko Hara, Lyubov I Golubeva, Irina G Andreeva, Tatiana M Kuvaeva, and Sergey V Mashko
BMC Mol Biol. 2009; 10: 34. Published online 2009 April 23. doi: 10.1186/1471-2199-10-34.
PMCID: PMC2682490
Liver-enriched transcription factors are critical for the expression of hepatocyte marker genes in mES-derived hepatocyte-lineage cells
Pakpoom Kheolamai and Alan J Dickson
BMC Mol Biol. 2009; 10: 35. Published online 2009 April 23. doi: 10.1186/1471-2199-10-35.
PMCID: PMC2680860
Proteins of the origin recognition complex (ORC) and DNA topoisomerases on mammalian chromatin
Hong-gang Hu, Martina Baack, and Rolf Knippers
BMC Mol Biol. 2009; 10: 36. Published online 2009 April 28. doi: 10.1186/1471-2199-10-36.
PMCID: PMC2681468
Human sex hormone-binding globulin gene expression- multiple promoters and complex alternative splicing
Atif M Nakhla, Daniel J Hryb, William Rosner, Nicholas A Romas, Zhaoying Xiang, and Scott M Kahn
BMC Mol Biol. 2009; 10: 37. Published online 2009 May 5. doi: 10.1186/1471-2199-10-37.
PMCID: PMC2694190
Characterization of the TRBP domain required for Dicer interaction and function in RNA interference
Sylvanne M Daniels, Carlos E Melendez-Peña, Robert J Scarborough, Aïcha Daher, Helen S Christensen, Mohamed El Far, Damian FJ Purcell, Sébastien Lainé, and Anne Gatignol
BMC Mol Biol. 2009; 10: 38. Published online 2009 May 7. doi: 10.1186/1471-2199-10-38.
PMCID: PMC2685382
Revised Mimivirus major capsid protein sequence reveals intron-containing gene structure and extra domain
Saïd Azza, Christian Cambillau, Didier Raoult, and Marie Suzan-Monti
BMC Mol Biol. 2009; 10: 39. Published online 2009 May 11. doi: 10.1186/1471-2199-10-39.
PMCID: PMC2688009
Thrombin induces Egr-1 expression in fibroblasts involving elevation of the intracellular Ca2+ concentration, phosphorylation of ERK and activation of ternary complex factor
Oliver G Rössler and Gerald Thiel
BMC Mol Biol. 2009; 10: 40. Published online 2009 May 11. doi: 10.1186/1471-2199-10-40.
PMCID: PMC2686679
Chibby forms a homodimer through a heptad repeat of leucine residues in its C-terminal coiled-coil motif
Adaobi Mofunanya, Feng-Qian Li, Jen-Chih Hsieh, and Ken-Ichi Takemaru
BMC Mol Biol. 2009; 10: 41. Published online 2009 May 12. doi: 10.1186/1471-2199-10-41.
PMCID: PMC2686680
TCF/β-catenin plays an important role in HCCR-1 oncogene expression
Goang-Won Cho, Mi-Hwa Kim, Seung Hyun Kim, Seon-Ah Ha, Hyun Kee Kim, Sanghee Kim, and Jin W Kim
BMC Mol Biol. 2009; 10: 42. Published online 2009 May 12. doi: 10.1186/1471-2199-10-42.
PMCID: PMC2693525
Parental origin of chromosomes influences crossover activity within the Kcnq1 transcriptionally imprinted domain of Mus musculus
Siemon H Ng, Rose Madeira, Emil D Parvanov, Lorin M Petros, Petko M Petkov, and Kenneth Paigen
BMC Mol Biol. 2009; 10: 43. Published online 2009 May 13. doi: 10.1186/1471-2199-10-43.
PMCID: PMC2689222
A trypsin-like protease with apparent dual function in early Lepeophtheirus salmonis (Krøyer) development
Rasmus Skern-Mauritzen, Petter Frost, Sussie Dalvin, Bjørn Olav Kvamme, Ingunn Sommerset, and Frank Nilsen
BMC Mol Biol. 2009; 10: 44. Published online 2009 May 13. doi: 10.1186/1471-2199-10-44.
PMCID: PMC2689223
Validation of commonly used reference genes for sleep-related gene expression studies
Kil S Lee, Tathiana A Alvarenga, Camila Guindalini, Monica L Andersen, Rosa MRPS Castro, and Sergio Tufik
BMC Mol Biol. 2009; 10: 45. Published online 2009 May 15. doi: 10.1186/1471-2199-10-45.
PMCID: PMC2685383
Identification of ColR binding consensus and prediction of regulon of ColRS two-component system
Paula A Kivistik, Rait Kivi, Maia Kivisaar, and Rita Hõrak
BMC Mol Biol. 2009; 10: 46. Published online 2009 May 16. doi: 10.1186/1471-2199-10-46.
PMCID: PMC2689224
The STAR RNA binding proteins GLD-1, QKI, SAM68 and SLM-2 bind bipartite RNA motifs
André Galarneau and Stéphane Richard
BMC Mol Biol. 2009; 10: 47. Published online 2009 May 20. doi: 10.1186/1471-2199-10-47.
PMCID: PMC2697983
Key role of the 3' untranslated region in the cell cycle regulated expression of the Leishmania infantum histone H2A genes: minor synergistic effect of the 5' untranslated region
Daniel R Abanades, Laura Ramírez, Salvador Iborra, Ketty Soteriadou, Victor M González, Pedro Bonay, Carlos Alonso, and Manuel Soto
BMC Mol Biol. 2009; 10: 48. Published online 2009 May 21. doi: 10.1186/1471-2199-10-48.
PMCID: PMC2691400
Breeding response of transcript profiling in developing seeds of Brassica napus
Yaping Hu, Gang Wu, Yinglong Cao, Yuhua Wu, Ling Xiao, Xiaodan Li, and Changming Lu
BMC Mol Biol. 2009; 10: 49. Published online 2009 May 24. doi: 10.1186/1471-2199-10-49.
PMCID: PMC2697984
Systematic cloning and analysis of autophagy-related genes from the silkworm Bombyx mori
Xuan Zhang, Zhan-Ying Hu, Wei-Fang Li, Qing-Rong Li, Xiao-Juan Deng, Wan-Ying Yang, Yang Cao, and Cong-Zhao Zhou
BMC Mol Biol. 2009; 10: 50. Published online 2009 May 27. doi: 10.1186/1471-2199-10-50.
PMCID: PMC2693526
DNA methylation-histone modification relationships across the desmin locus in human primary cells
Marianne Lindahl Allen, Christoph M Koch, Gayle K Clelland, Ian Dunham, and Michael Antoniou
BMC Mol Biol. 2009; 10: 51. Published online 2009 May 27. doi: 10.1186/1471-2199-10-51.
PMCID: PMC2695444
Cloning and analysis of a bifunctional methyltransferase/restriction endonuclease TspGWI, the prototype of a Thermus sp. enzyme family
Agnieszka Zylicz-Stachula, Janusz M Bujnicki, and Piotr M Skowron
BMC Mol Biol. 2009; 10: 52. Published online 2009 May 29. doi: 10.1186/1471-2199-10-52.
PMCID: PMC2700111
Expanded alternative splice isoform profiling of the mouse Cav3.1/α1G T-type calcium channel
Wayne L Ernst and Jeffrey L Noebels
BMC Mol Biol. 2009; 10: 53. Published online 2009 May 29. doi: 10.1186/1471-2199-10-53.
PMCID: PMC2696442
Reference genes for QRT-PCR tested under various stress conditions in Folsomia candida and Orchesella cincta (Insecta, Collembola)
Muriel E de Boer, Tjalf E de Boer, Janine Mariën, Martijn JTN Timmermans, Benjamin Nota, Nico M van Straalen, Jacintha Ellers, and Dick Roelofs
BMC Mol Biol. 2009; 10: 54. Published online 2009 June 1. doi: 10.1186/1471-2199-10-54.
PMCID: PMC2698932
RNF168, a new RING finger, MIU-containing protein that modifies chromatin by ubiquitination of histones H2A and H2AX
Sabrina Pinato, Cristina Scandiuzzi, Nadia Arnaudo, Elisabetta Citterio, Giovanni Gaudino, and Lorenza Penengo
BMC Mol Biol. 2009; 10: 55. Published online 2009 June 5. doi: 10.1186/1471-2199-10-55.
PMCID: PMC2699339
Validation of housekeeping genes for quantitative real-time PCR in in-vivo and in-vitro models of cerebral ischaemia
Carme Gubern, Olivia Hurtado, Rocío Rodríguez, Jesús R Morales, Víctor G Romera, María A Moro, Ignacio Lizasoain, Joaquín Serena, and Judith Mallolas
BMC Mol Biol. 2009; 10: 57. Published online 2009 June 16. doi: 10.1186/1471-2199-10-57.
PMCID: PMC2706836
Identification, characterization and expression of novel Sex Hormone Binding Globulin alternative first exons in the human prostate
Tomàs Pinós, Anna Barbosa-Desongles, Antoni Hurtado, Albert Santamaria-Martínez, Inés de Torres, Joan Morote, Jaume Reventós, and Francina Munell
BMC Mol Biol. 2009; 10: 59. Published online 2009 June 17. doi: 10.1186/1471-2199-10-59.
PMCID: PMC2706245
Elongation factor eEF1B modulates functions of the release factors eRF1 and eRF3 and the efficiency of translation termination in yeast
Igor A Valouev, Gleb V Fominov, Elizaveta E Sokolova, Vladimir N Smirnov, and Michael D Ter-Avanesyan
BMC Mol Biol. 2009; 10: 60. Published online 2009 June 22. doi: 10.1186/1471-2199-10-60.
PMCID: PMC2705663
Construction of an adult barnacle (Balanus amphitrite) cDNA library and selection of reference genes for quantitative RT-PCR studies
Tristano Bacchetti De Gregoris, Marco Borra, Elio Biffali, Thomas Bekel, J Grant Burgess, Richard R Kirby, and Anthony S Clare
BMC Mol Biol. 2009; 10: 62. Published online 2009 June 24. doi: 10.1186/1471-2199-10-62.
PMCID: PMC2713238
Selection and evaluation of reference genes for improved interrogation of microbial transcriptomes: case study with the extremophile Acidithiobacillus ferrooxidans
Pamela A Nieto, Paulo C Covarrubias, Eugenia Jedlicki, David S Holmes, and Raquel Quatrini
BMC Mol Biol. 2009; 10: 63. Published online 2009 June 25. doi: 10.1186/1471-2199-10-63.
PMCID: PMC2713239
Identification of a novel nucleolin related protein (NRP) gene expressed during rat spermatogenesis
Keerthi T Chathoth, Gayatri Ganesan, and MRS Rao
BMC Mol Biol. 2009; 10: 64. Published online 2009 July 1. doi: 10.1186/1471-2199-10-64.
PMCID: PMC2711064
The vasa regulatory region mediates germline expression and maternal transmission of proteins in the malaria mosquito Anopheles gambiae: a versatile tool for genetic control strategies
Philippos A Papathanos, Nikolai Windbichler, Miriam Menichelli, Austin Burt, and Andrea Crisanti
BMC Mol Biol. 2009; 10: 65. Published online 2009 July 2. doi: 10.1186/1471-2199-10-65.
PMCID: PMC2713240
Identification of valid reference genes during the differentiation of human myoblasts
Jens Stern-Straeter, Gabriel A Bonaterra, Karl Hörmann, Ralf Kinscherf, and Ulrich R Goessler
BMC Mol Biol. 2009; 10: 66. Published online 2009 July 2. doi: 10.1186/1471-2199-10-66.
PMCID: PMC2714309
Cooperation between NRF-2 and YY-1 transcription factors is essential for triggering the expression of the PREPL-C2ORF34 bidirectional gene pair
Chien-Chang Huang and Wun-Shaing Wayne Chang
BMC Mol Biol. 2009; 10: 67. Published online 2009 July 3. doi: 10.1186/1471-2199-10-67.
PMCID: PMC2713978
Expression of HNF4alpha in the human and rat choroid plexus – Implications for drug transport across the blood-cerebrospinal-fluid (CSF) barrier
Monika Niehof and Jürgen Borlak
BMC Mol Biol. 2009; 10: 68. Published online 2009 July 3. doi: 10.1186/1471-2199-10-68.
PMCID: PMC2713241
Selection and validation of a set of reliable reference genes for quantitative RT-PCR studies in the brain of the Cephalopod Mollusc Octopus vulgaris
Maria Sirakov, Ilaria Zarrella, Marco Borra, Francesca Rizzo, Elio Biffali, Maria Ina Arnone, and Graziano Fiorito
BMC Mol Biol. 2009; 10: 70. Published online 2009 July 14. doi: 10.1186/1471-2199-10-70.
PMCID: PMC2722649
Selection of reference genes for normalisation of real-time RT-PCR in brain-stem death injury in Ovis aries
Margaret Passmore, Maria Nataatmadja, and John F Fraser
BMC Mol Biol. 2009; 10: 72. Published online 2009 July 23. doi: 10.1186/1471-2199-10-72.
PMCID: PMC2721835
DNA binding by Corynebacterium glutamicum TetR-type transcription regulator AmtR
Daniela Muhl, Nadja Jeßberger, Kristin Hasselt, Christophe Jardin, Heinrich Sticht, and Andreas Burkovski
BMC Mol Biol. 2009; 10: 73. Published online 2009 July 23. doi: 10.1186/1471-2199-10-73.
PMCID: PMC2723105
Transcription of the rat testis-specific Rtdpoz-T1 and -T2 retrogenes during embryo development: co-transcription and frequent exonisation of transposable element sequences
Chiu-Jung Huang, Wan-Yi Lin, Che-Ming Chang, and Kong-Bung Choo
BMC Mol Biol. 2009; 10: 74. Published online 2009 July 25. doi: 10.1186/1471-2199-10-74.
PMCID: PMC2724483
Characterisation of urokinase plasminogen activator receptor variants in human airway and peripheral cells
Ceri E Stewart and Ian Sayers
BMC Mol Biol. 2009; 10: 75. Published online 2009 July 28. doi: 10.1186/1471-2199-10-75.
PMCID: PMC2724484
Multiple histone modifications in euchromatin promote heterochromatin formation by redundant mechanisms in Saccharomyces cerevisiae
Kitty F Verzijlbergen, Alex W Faber, Iris JE Stulemeijer, and Fred van Leeuwen
BMC Mol Biol. 2009; 10: 76. Published online 2009 July 28. doi: 10.1186/1471-2199-10-76.
PMCID: PMC2724485
Targeted suppression of heme oxygenase-1 by small interference RNAs inhibits the production of bilirubin in neonatal rat with hyperbilirubinemia
Jinyong Wu, Wen Su, Youxin Jin, Yi Shi, Chune Li, Wenwei Zhong, Xuehong Zhang, Zili Zhang, and Zhenwei Xia
BMC Mol Biol. 2009; 10: 77. Published online 2009 August 1. doi: 10.1186/1471-2199-10-77.
PMCID: PMC2726144
Reference gene selection for head and neck squamous cell carcinoma gene expression studies
Benjamin Lallemant, Alexandre Evrard, Christophe Combescure, Heliette Chapuis, Guillaume Chambon, Caroline Raynal, Christophe Reynaud, Omar Sabra, Dominique Joubert, Frédéric Hollande, Jean-Gabriel Lallemant, Serge Lumbroso, and Jean-Paul Brouillet
BMC Mol Biol. 2009; 10: 78. Published online 2009 August 3. doi: 10.1186/1471-2199-10-78.
PMCID: PMC2729078
Selection of reference genes for expression studies with fish myogenic cell cultures
Neil I Bower and Ian A Johnston
BMC Mol Biol. 2009; 10: 80. Published online 2009 August 10. doi: 10.1186/1471-2199-10-80.
PMCID: PMC2736950
Natural antisense transcript of natriuretic peptide precursor A (NPPA): structural organization and modulation of NPPA expression
Tarmo Annilo, Katrin Kepp, and Maris Laan
BMC Mol Biol. 2009; 10: 81. Published online 2009 August 11. doi: 10.1186/1471-2199-10-81.
PMCID: PMC2731763
Functional mapping of the fission yeast DNA polymerase δ B-subunit Cdc1 by site-directed and random pentapeptide insertion mutagenesis
Javier Sanchez Garcia, Andrey G Baranovskiy, Elena V Knatko, Fiona C Gray, Tahir H Tahirov, and Stuart A MacNeill
BMC Mol Biol. 2009; 10: 82. Published online 2009 August 17. doi: 10.1186/1471-2199-10-82.
PMCID: PMC2734569
Regulation of Neph3 gene in podocytes – key roles of transcription factors NF-κB and Sp1
Mervi Ristola, Satu Arpiainen, Moin A Saleem, Peter W Mathieson, Gavin I Welsh, Sanna Lehtonen, and Harry Holthöfer
BMC Mol Biol. 2009; 10: 83. Published online 2009 August 24. doi: 10.1186/1471-2199-10-83.
PMCID: PMC2736951
Loss of the insulator protein CTCF during nematode evolution
Peter Heger, Birger Marin, and Einhard Schierenberg
BMC Mol Biol. 2009; 10: 84. Published online 2009 August 27. doi: 10.1186/1471-2199-10-84.
PMCID: PMC2749850
YY1 is autoregulated through its own DNA-binding sites
Jeong Do Kim, Sungryul Yu, and Joomyeong Kim
BMC Mol Biol. 2009; 10: 85. Published online 2009 August 27. doi: 10.1186/1471-2199-10-85.
PMCID: PMC2743690
Molecular analysis of Ku redox regulation
Sara M Bennett, Tracy M Neher, Andrea Shatilla, and John J Turchi
BMC Mol Biol. 2009; 10: 86. Published online 2009 August 28. doi: 10.1186/1471-2199-10-86.
PMCID: PMC2741464
Promoter analysis of the rabbit POU5F1 gene and its expression in preimplantation stage embryos
Julianna Kobolak, Katalin Kiss, Zsuzsanna Polgar, Solomon Mamo, Claire Rogel-Gaillard, Zsuzsanna Tancos, Istvan Bock, Arpad G Baji, Krisztina Tar, Melinda K Pirity, and Andras Dinnyes
BMC Mol Biol. 2009; 10: 88. Published online 2009 September 4. doi: 10.1186/1471-2199-10-88.
PMCID: PMC2751759
Interaction of ZEB and Histone Deacetylase with the PLDLS-binding cleft region of monomeric C-terminal Binding Protein 2
Ling-Jun Zhao, M Kuppuswamy, S Vijayalingam, and G Chinnadurai
BMC Mol Biol. 2009; 10: 89. Published online 2009 September 15. doi: 10.1186/1471-2199-10-89.
PMCID: PMC2749851
Characterization of bovine miRNAs by sequencing and bioinformatics analysis
Weiwu Jin, Jason R Grant, Paul Stothard, Stephen S Moore, and Le Luo Guan
BMC Mol Biol. 2009; 10: 90. Published online 2009 September 16. doi: 10.1186/1471-2199-10-90.
PMCID: PMC2761914
From sequence to dynamics: the effects of transcription factor and polymerase concentration changes on activated and repressed promoters
Abel González Pérez, Vladimir Espinosa Angarica, Julio Collado-Vides, and Ana Tereza Ribeiro Vasconcelos
BMC Mol Biol. 2009; 10: 92. Published online 2009 September 22. doi: 10.1186/1471-2199-10-92.
PMCID: PMC2761915
Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR
Ruibo Hu, Chengming Fan, Hongyu Li, Qingzhu Zhang, and Yong-Fu Fu
BMC Mol Biol. 2009; 10: 93. Published online 2009 September 28. doi: 10.1186/1471-2199-10-93.
PMCID: PMC2761916
Validation of suitable house keeping genes for hypoxia-cultured human chondrocytes
Casper Bindzus Foldager, Samir Munir, Michael Ulrik-Vinther, Kjeld Søballe, Cody Bünger, and Martin Lind
BMC Mol Biol. 2009; 10: 94. Published online 2009 October 9. doi: 10.1186/1471-2199-10-94.
PMCID: PMC2764705
A small intergenic region drives exclusive tissue-specific expression of the adjacent genes in Arabidopsis thaliana
Hernán G Bondino and Estela M Valle
BMC Mol Biol. 2009; 10: 95. Published online 2009 October 16. doi: 10.1186/1471-2199-10-95.
PMCID: PMC2772851
Dual effect of a single nucleotide polymorphism in the first intron of the porcine Secreted phosphoprotein 1 gene: allele-specific binding of C/EBP beta and activation of aberrant splicing
Eduard Muráni, Siriluck Ponsuksili, Hans-Martin Seyfert, Xuanming Shi, and Klaus Wimmers
BMC Mol Biol. 2009; 10: 96. Published online 2009 October 21. doi: 10.1186/1471-2199-10-96.
PMCID: PMC2773772
Preliminary molecular characterization of the human pathogen Angiostrongylus cantonensis
Hualiang He, Mei Cheng, Xiao Yang, Jinxiu Meng, Ai He, Xiaoying Zheng, Zhuoya Li, Pengjuan Guo, Zhihua Pan, and Ximei Zhan
BMC Mol Biol. 2009; 10: 97. Published online 2009 October 25. doi: 10.1186/1471-2199-10-97.
PMCID: PMC2774698
RAD51 paralogs promote homology-directed repair at diversifying immunoglobulin V regions
Ellen C Ordinario, Munehisa Yabuki, Priya Handa, W Jason Cummings, and Nancy Maizels
BMC Mol Biol. 2009; 10: 98. Published online 2009 October 28. doi: 10.1186/1471-2199-10-98.
PMCID: PMC2774322
Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae
Marie-Ange Teste, Manon Duquenne, Jean M François, and Jean-Luc Parrou
BMC Mol Biol. 2009; 10: 99. Published online 2009 October 30. doi: 10.1186/1471-2199-10-99.
PMCID: PMC2776018
Methodology Articles
Optimal use of tandem biotin and V5 tags in ChIP assays
Katarzyna E Kolodziej, Farzin Pourfarzad, Ernie de Boer, Sanja Krpic, Frank Grosveld, and John Strouboulis
BMC Mol Biol. 2009; 10: 6. Published online 2009 February 5. doi: 10.1186/1471-2199-10-6.
PMCID: PMC2644297
Selection of suitable housekeeping genes for expression analysis in glioblastoma using quantitative RT-PCR
Valeria Valente, Silvia A Teixeira, Luciano Neder, Oswaldo K Okamoto, Sueli M Oba-Shinjo, Suely KN Marie, Carlos A Scrideli, Maria L Paçó-Larson, and Carlos G Carlotti, Jr
BMC Mol Biol. 2009; 10: 17. Published online 2009 March 3. doi: 10.1186/1471-2199-10-17.
PMCID: PMC2661085
Cloning-free regulated monitoring of reporter and gene expression
Latifa al-Haj, Wijdan Al-Ahmadi, Maher Al-Saif, Omer Demirkaya, and Khalid SA Khabar
BMC Mol Biol. 2009; 10: 20. Published online 2009 March 8. doi: 10.1186/1471-2199-10-20.
PMCID: PMC2662838
Reverse transcription-quantitative polymerase chain reaction: description of a RIN-based algorithm for accurate data normalization
Alexandre Ho-Pun-Cheung, Caroline Bascoul-Mollevi, Eric Assenat, Florence Boissière-Michot, Frédéric Bibeau, Dominic Cellier, Marc Ychou, and Evelyne Lopez-Crapez
BMC Mol Biol. 2009; 10: 31. Published online 2009 April 15. doi: 10.1186/1471-2199-10-31.
PMCID: PMC2679744
Identification and validation of housekeeping genes in brains of the desert locust Schistocerca gregaria under different developmental conditions
Matthias B Van Hiel, Pieter Van Wielendaele, Liesbet Temmerman, Sofie Van Soest, Kristel Vuerinckx, Roger Huybrechts, Jozef Vanden Broeck, and Gert Simonet
BMC Mol Biol. 2009; 10: 56. Published online 2009 June 9. doi: 10.1186/1471-2199-10-56.
PMCID: PMC2700112
Improved long-term expression from helper virus-free HSV-1 vectors packaged using combinations of mutated HSV-1 proteins that include the UL13 protein kinase and specific components of the VP16 transcriptional complex
Meng Liu, Xiaodan Wang, and Alfred I Geller
BMC Mol Biol. 2009; 10: 58. Published online 2009 June 16. doi: 10.1186/1471-2199-10-58.
PMCID: PMC2709626
A strategy for enrichment of claudins based on their affinity to Clostridium perfringens enterotoxin
Dörte Lohrberg, Eberhard Krause, Michael Schümann, Jörg Piontek, Lars Winkler, Ingolf E Blasig, and Reiner F Haseloff
BMC Mol Biol. 2009; 10: 61. Published online 2009 June 22. doi: 10.1186/1471-2199-10-61.
PMCID: PMC2713237
High quality RNA from multiple brain regions simultaneously acquired by laser capture microdissection
Wei-Zhi Wang, Franziska M Oeschger, Sheena Lee, and Zoltán Molnár
BMC Mol Biol. 2009; 10: 69. Published online 2009 July 6. doi: 10.1186/1471-2199-10-69.
PMCID: PMC2713242
Analysis of current and alternative phenol based RNA extraction methodologies for cyanobacteria
Fernando Lopes Pinto, Anders Thapper, Wolfgang Sontheim, and Peter Lindblad
BMC Mol Biol. 2009; 10: 79. Published online 2009 August 7. doi: 10.1186/1471-2199-10-79.
PMCID: PMC2729743
Multigene expression of protein complexes by iterative modification of genomic Bacmid DNA
Rob J Noad, Meredith Stewart, Mark Boyce, Cristina C Celma, Keith R Willison, and Polly Roy
BMC Mol Biol. 2009; 10: 87. Published online 2009 September 2. doi: 10.1186/1471-2199-10-87.
PMCID: PMC2749033
Quadruple 9-mer-based protein binding microarray with DsRed fusion protein
Min-Jeong Kim, Tae-Ho Lee, Yoon-Mok Pahk, Yul-Ho Kim, Hyang-Mi Park, Yang Do Choi, Baek Hie Nahm, and Yeon-Ki Kim
BMC Mol Biol. 2009; 10: 91. Published online 2009 September 18. doi: 10.1186/1471-2199-10-91.
PMCID: PMC2754467
Evaluation of real-time PCR endogenous control genes for analysis of gene expression in bovine endometrium
Caroline G Walker, Susanne Meier, Murray D Mitchell, John R Roche, and Mathew Littlejohn
BMC Mol Biol. 2009; 10: 100. Published online 2009 November 1. doi: 10.1186/1471-2199-10-100.
PMCID: PMC2774697
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