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Research article Functional characterization of two CITED3 homologs (gcCITED3a and gcCITED3b) in the hypoxia-tolerant grass carp, Ctenopharyngodon idellus Patrick KS Ng, Sung-Kay Chiu, Theresa FN Kwong, Richard MK Yu, Minnie ML Wong, and Richard YC Kong BMC Mol Biol. 2009; 10: 101. Published online 2009 November 3. doi: 10.1186/1471-2199-10-101.PMCID: PMC2780419 The sterol carrier protein 2/3-oxoacyl-CoA thiolase (SCPx) is involved in cholesterol uptake in the midgut of Spodoptera litura: gene cloning, expression, localization and functional analyses Xing-Rong Guo, Si-Chun Zheng, Lin Liu, and Qi-Li Feng BMC Mol Biol. 2009; 10: 102. Published online 2009 November 13. doi: 10.1186/1471-2199-10-102.PMCID: PMC2779813 Research Articles Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions Carla F Barsalobres-Cavallari, Fábio E Severino, Mirian P Maluf, and Ivan G Maia BMC Mol Biol. 2009; 10: 1. Published online 2009 January 6. doi: 10.1186/1471-2199-10-1.PMCID: PMC2629470 Identification of novel Bach2 transcripts and protein isoforms through tagging analysis of retroviral integrations in B-cell lymphomas Jinghua Liu, Annette Balle Sørensen, Bruce Wang, Matthias Wabl, Anders Lade Nielsen, and Finn Skou Pedersen BMC Mol Biol. 2009; 10: 2. Published online 2009 January 21. doi: 10.1186/1471-2199-10-2.PMCID: PMC2635362 Identification of two proteins that interact with the Erp virulence factor from Mycobacterium tuberculosis by using the bacterial two-hybrid system Laura I Klepp, Marcelo Soria, Federico C Blanco, María V Bianco, María P Santangelo, Angel A Cataldi, and Fabiana Bigi BMC Mol Biol. 2009; 10: 3. Published online 2009 January 21. doi: 10.1186/1471-2199-10-3.PMCID: PMC2639381 Activation of mRNA translation by phage protein and low temperature: the case of Lactococcus lactis abortive infection system AbiD1 Elena Bidnenko, Alain Chopin, S Dusko Ehrlich, and Marie-Christine Chopin BMC Mol Biol. 2009; 10: 4. Published online 2009 January 27. doi: 10.1186/1471-2199-10-4.PMCID: PMC2661086 A noncoding RNA gene on chromosome 10p15.3 may function upstream of hTERT Norimasa Miura, Reina Sato, Tomoe Tsukamoto, Mika Shimizu, Hiroko Kabashima, Miho Takeda, Shunsaku Takahashi, Tomomi Harada, James E West, Harry Drabkin, Jose E Mejia, Goshi Shiota, Yoshikazu Murawaki, Arvind Virmani, Adi F Gazdar, Mitsuo Oshimura, and Junichi Hasegawa BMC Mol Biol. 2009; 10: 5. Published online 2009 February 2. doi: 10.1186/1471-2199-10-5.PMCID: PMC2661890 Multiple RNAs from the mouse carboxypeptidase M locus: functional RNAs or transcription noise? Alessander O Guimarães, Fabiana L Motta, Viviane S Alves, Beatriz A Castilho, and João B Pesquero BMC Mol Biol. 2009; 10: 7. Published online 2009 February 8. doi: 10.1186/1471-2199-10-7.PMCID: PMC2644694 Influence of vector design and host cell on the mechanism of recombination and emergence of mutant subpopulations of replicating retroviral vectors Matthias Paar, Dieter Klein, Brian Salmons, Walter H Günzburg, Matthias Renner, and Daniel Portsmouth BMC Mol Biol. 2009; 10: 8. Published online 2009 February 9. doi: 10.1186/1471-2199-10-8.PMCID: PMC2645402 Spinocerebellar ataxia type 8 larger triplet expansion alters histone modification and induces RNA foci I-Cheng Chen, Hsuan-Yuan Lin, Ghin-Chueh Lee, Shih-Huan Kao, Chiung-Mei Chen, Yih-Ru Wu, Hsiu-Mei Hsieh-Li, Ming-Tsan Su, and Guey-Jen Lee-Chen BMC Mol Biol. 2009; 10: 9. Published online 2009 February 10. doi: 10.1186/1471-2199-10-9.PMCID: PMC2647542 Removal of Hsf4 leads to cataract development in mice through down-regulation of γS-crystallin and Bfsp expression Xiaohe Shi, Bin Cui, Zhugang Wang, Lin Weng, Zhongping Xu, Jinjin Ma, Guotong Xu, Xiangyin Kong, and Landian Hu BMC Mol Biol. 2009; 10: 10. Published online 2009 February 19. doi: 10.1186/1471-2199-10-10.PMCID: PMC2653017 Identification and validation of reference genes for quantitative RT-PCR normalization in wheat Anna R Paolacci, Oronzo A Tanzarella, Enrico Porceddu, and Mario Ciaffi BMC Mol Biol. 2009; 10: 11. Published online 2009 February 20. doi: 10.1186/1471-2199-10-11.PMCID: PMC2667184 Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells Yuliang Tan, Bo Zhang, Tao Wu, Geir Skogerbø, Xiaopeng Zhu, Xiangqian Guo, Shunmin He, and Runsheng Chen BMC Mol Biol. 2009; 10: 12. Published online 2009 February 22. doi: 10.1186/1471-2199-10-12.PMCID: PMC2680403 Sex-different and growth hormone-regulated expression of microRNA in rat liver Louisa Cheung, Carolina Gustavsson, Gunnar Norstedt, and Petra Tollet-Egnell BMC Mol Biol. 2009; 10: 13. Published online 2009 February 23. doi: 10.1186/1471-2199-10-13.PMCID: PMC2654566 Expansion of a chromosomal repeat in Escherichia coli: roles of replication, repair, and recombination functions Anthony R Poteete BMC Mol Biol. 2009; 10: 14. Published online 2009 February 23. doi: 10.1186/1471-2199-10-14.PMCID: PMC2656507 Genetic correction of splice site mutation in purified and enriched myoblasts isolated from mdx5cv mice Katie Maguire, Takayuki Suzuki, Darlise DiMatteo, Hetal Parekh-Olmedo, and Eric Kmiec BMC Mol Biol. 2009; 10: 15. Published online 2009 February 23. doi: 10.1186/1471-2199-10-15.PMCID: PMC2654480 Binding of PFOS to serum albumin and DNA: insight into the molecular toxicity of perfluorochemicals Xian Zhang, Ling Chen, Xun-Chang Fei, Yin-Sheng Ma, and Hong-Wen Gao BMC Mol Biol. 2009; 10: 16. Published online 2009 February 25. doi: 10.1186/1471-2199-10-16.PMCID: PMC2656506 Discriminating nucleosomes containing histone H2A.Z or H2A based on genetic and epigenetic information Alain L Gervais and Luc Gaudreau BMC Mol Biol. 2009; 10: 18. Published online 2009 March 4. doi: 10.1186/1471-2199-10-18.PMCID: PMC2660331 The characterization of DNA methylation-mediated regulation of bovine placental lactogen and bovine prolactin-related protein-1 genes Yuki Nakaya, Keiichiro Kizaki, Toru Takahashi, Osman V Patel, and Kazuiyoshi Hashizume BMC Mol Biol. 2009; 10: 19. Published online 2009 March 5. doi: 10.1186/1471-2199-10-19.PMCID: PMC2666728 Time course analysis of RNA stability in human placenta Isabelle Fajardy, Emmanuelle Moitrot, Anne Vambergue, Maryse Vandersippe-Millot, Philippe Deruelle, and Jean Rousseaux BMC Mol Biol. 2009; 10: 21. Published online 2009 March 10. doi: 10.1186/1471-2199-10-21.PMCID: PMC2664811 A family of splice variants of CstF-64 expressed in vertebrate nervous systems Ganesh S Shankarling, Penelope W Coates, Brinda Dass, and Clinton C MacDonald BMC Mol Biol. 2009; 10: 22. Published online 2009 March 12. doi: 10.1186/1471-2199-10-22.PMCID: PMC2660332 A functional type I topoisomerase from Pseudomonas aeruginosa Teesta Jain, Benjamin J Roper, and Anne Grove BMC Mol Biol. 2009; 10: 23. Published online 2009 March 24. doi: 10.1186/1471-2199-10-23.PMCID: PMC2666729 HMGB1/2 can target DNA for illegitimate cleavage by the RAG1/2 complex Ming Zhang and Patrick C Swanson BMC Mol Biol. 2009; 10: 24. Published online 2009 March 24. doi: 10.1186/1471-2199-10-24.PMCID: PMC2666730 Identification and characterization of a POU transcription factor in the cotton bollworm, Helicoverpa armigera Tian-Yi Zhang and Wei-Hua Xu BMC Mol Biol. 2009; 10: 25. Published online 2009 March 25. doi: 10.1186/1471-2199-10-25.PMCID: PMC2672083 Evidence of a tick RNAi pathway by comparative genomics and reverse genetics screen of targets with known loss-of-function phenotypes in Drosophila Sebastian Kurscheid, Ala E Lew-Tabor, Manuel Rodriguez Valle, Anthea G Bruyeres, Vivienne J Doogan, Ulrike G Munderloh, Felix D Guerrero, Roberto A Barrero, and Matthew I Bellgard BMC Mol Biol. 2009; 10: 26. Published online 2009 March 26. doi: 10.1186/1471-2199-10-26.PMCID: PMC2676286 Functional characterization and identification of mouse Rad51d splice variants Aaron M Gruver, Brian D Yard, Campbell McInnes, Changanamkandath Rajesh, and Douglas L Pittman BMC Mol Biol. 2009; 10: 27. Published online 2009 March 27. doi: 10.1186/1471-2199-10-27.PMCID: PMC2667185 Co-regulated expression of HAND2 and DEIN by a bidirectional promoter with asymmetrical activity in neuroblastoma Harald Voth, André Oberthuer, Thorsten Simon, Yvonne Kahlert, Frank Berthold, and Matthias Fischer BMC Mol Biol. 2009; 10: 28. Published online 2009 April 6. doi: 10.1186/1471-2199-10-28.PMCID: PMC2670301 Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor Botao Zhao, Liangfa Ge, Ruqiang Liang, Wei Li, Kangcheng Ruan, Hongxuan Lin, and Youxin Jin BMC Mol Biol. 2009; 10: 29. Published online 2009 April 8. doi: 10.1186/1471-2199-10-29.PMCID: PMC2670843 A novel liver specific isoform of the rat LAR transcript is expressed as a truncated isoform encoded from a 5'UTR located within intron 11 Simon JM Welham, Adrian JL Clark, and Andrew M Salter BMC Mol Biol. 2009; 10: 30. Published online 2009 April 8. doi: 10.1186/1471-2199-10-30.PMCID: PMC2674045 Requirements for E1A dependent transcription in the yeast Saccharomyces cerevisiae Ahmed F Yousef, Christopher J Brandl, and Joe S Mymryk BMC Mol Biol. 2009; 10: 32. Published online 2009 April 17. doi: 10.1186/1471-2199-10-32.PMCID: PMC2674444 The zinc finger protein Zn72D and DEAD box helicase Belle interact and control maleless mRNA and protein levels Kathleen A Worringer, Feixia Chu, and Barbara Panning BMC Mol Biol. 2009; 10: 33. Published online 2009 April 22. doi: 10.1186/1471-2199-10-33.PMCID: PMC2680859 Use of the λ Red-recombineering method for genetic engineering of Pantoea ananatis Joanna I Katashkina, Yoshihiko Hara, Lyubov I Golubeva, Irina G Andreeva, Tatiana M Kuvaeva, and Sergey V Mashko BMC Mol Biol. 2009; 10: 34. Published online 2009 April 23. doi: 10.1186/1471-2199-10-34.PMCID: PMC2682490 Liver-enriched transcription factors are critical for the expression of hepatocyte marker genes in mES-derived hepatocyte-lineage cells Pakpoom Kheolamai and Alan J Dickson BMC Mol Biol. 2009; 10: 35. Published online 2009 April 23. doi: 10.1186/1471-2199-10-35.PMCID: PMC2680860 Proteins of the origin recognition complex (ORC) and DNA topoisomerases on mammalian chromatin Hong-gang Hu, Martina Baack, and Rolf Knippers BMC Mol Biol. 2009; 10: 36. Published online 2009 April 28. doi: 10.1186/1471-2199-10-36.PMCID: PMC2681468 Human sex hormone-binding globulin gene expression- multiple promoters and complex alternative splicing Atif M Nakhla, Daniel J Hryb, William Rosner, Nicholas A Romas, Zhaoying Xiang, and Scott M Kahn BMC Mol Biol. 2009; 10: 37. Published online 2009 May 5. doi: 10.1186/1471-2199-10-37.PMCID: PMC2694190 Characterization of the TRBP domain required for Dicer interaction and function in RNA interference Sylvanne M Daniels, Carlos E Melendez-Peña, Robert J Scarborough, Aïcha Daher, Helen S Christensen, Mohamed El Far, Damian FJ Purcell, Sébastien Lainé, and Anne Gatignol BMC Mol Biol. 2009; 10: 38. Published online 2009 May 7. doi: 10.1186/1471-2199-10-38.PMCID: PMC2685382 Revised Mimivirus major capsid protein sequence reveals intron-containing gene structure and extra domain Saïd Azza, Christian Cambillau, Didier Raoult, and Marie Suzan-Monti BMC Mol Biol. 2009; 10: 39. Published online 2009 May 11. doi: 10.1186/1471-2199-10-39.PMCID: PMC2688009 Thrombin induces Egr-1 expression in fibroblasts involving elevation of the intracellular Ca2+ concentration, phosphorylation of ERK and activation of ternary complex factor Oliver G Rössler and Gerald Thiel BMC Mol Biol. 2009; 10: 40. Published online 2009 May 11. doi: 10.1186/1471-2199-10-40.PMCID: PMC2686679 Chibby forms a homodimer through a heptad repeat of leucine residues in its C-terminal coiled-coil motif Adaobi Mofunanya, Feng-Qian Li, Jen-Chih Hsieh, and Ken-Ichi Takemaru BMC Mol Biol. 2009; 10: 41. Published online 2009 May 12. doi: 10.1186/1471-2199-10-41.PMCID: PMC2686680 TCF/β-catenin plays an important role in HCCR-1 oncogene expression Goang-Won Cho, Mi-Hwa Kim, Seung Hyun Kim, Seon-Ah Ha, Hyun Kee Kim, Sanghee Kim, and Jin W Kim BMC Mol Biol. 2009; 10: 42. Published online 2009 May 12. doi: 10.1186/1471-2199-10-42.PMCID: PMC2693525 Parental origin of chromosomes influences crossover activity within the Kcnq1 transcriptionally imprinted domain of Mus musculus Siemon H Ng, Rose Madeira, Emil D Parvanov, Lorin M Petros, Petko M Petkov, and Kenneth Paigen BMC Mol Biol. 2009; 10: 43. Published online 2009 May 13. doi: 10.1186/1471-2199-10-43.PMCID: PMC2689222 A trypsin-like protease with apparent dual function in early Lepeophtheirus salmonis (Krøyer) development Rasmus Skern-Mauritzen, Petter Frost, Sussie Dalvin, Bjørn Olav Kvamme, Ingunn Sommerset, and Frank Nilsen BMC Mol Biol. 2009; 10: 44. Published online 2009 May 13. doi: 10.1186/1471-2199-10-44.PMCID: PMC2689223 Validation of commonly used reference genes for sleep-related gene expression studies Kil S Lee, Tathiana A Alvarenga, Camila Guindalini, Monica L Andersen, Rosa MRPS Castro, and Sergio Tufik BMC Mol Biol. 2009; 10: 45. Published online 2009 May 15. doi: 10.1186/1471-2199-10-45.PMCID: PMC2685383 Identification of ColR binding consensus and prediction of regulon of ColRS two-component system Paula A Kivistik, Rait Kivi, Maia Kivisaar, and Rita Hõrak BMC Mol Biol. 2009; 10: 46. Published online 2009 May 16. doi: 10.1186/1471-2199-10-46.PMCID: PMC2689224 The STAR RNA binding proteins GLD-1, QKI, SAM68 and SLM-2 bind bipartite RNA motifs André Galarneau and Stéphane Richard BMC Mol Biol. 2009; 10: 47. Published online 2009 May 20. doi: 10.1186/1471-2199-10-47.PMCID: PMC2697983 Key role of the 3' untranslated region in the cell cycle regulated expression of the Leishmania infantum histone H2A genes: minor synergistic effect of the 5' untranslated region Daniel R Abanades, Laura Ramírez, Salvador Iborra, Ketty Soteriadou, Victor M González, Pedro Bonay, Carlos Alonso, and Manuel Soto BMC Mol Biol. 2009; 10: 48. Published online 2009 May 21. doi: 10.1186/1471-2199-10-48.PMCID: PMC2691400 Breeding response of transcript profiling in developing seeds of Brassica napus Yaping Hu, Gang Wu, Yinglong Cao, Yuhua Wu, Ling Xiao, Xiaodan Li, and Changming Lu BMC Mol Biol. 2009; 10: 49. Published online 2009 May 24. doi: 10.1186/1471-2199-10-49.PMCID: PMC2697984 Systematic cloning and analysis of autophagy-related genes from the silkworm Bombyx mori Xuan Zhang, Zhan-Ying Hu, Wei-Fang Li, Qing-Rong Li, Xiao-Juan Deng, Wan-Ying Yang, Yang Cao, and Cong-Zhao Zhou BMC Mol Biol. 2009; 10: 50. Published online 2009 May 27. doi: 10.1186/1471-2199-10-50.PMCID: PMC2693526 DNA methylation-histone modification relationships across the desmin locus in human primary cells Marianne Lindahl Allen, Christoph M Koch, Gayle K Clelland, Ian Dunham, and Michael Antoniou BMC Mol Biol. 2009; 10: 51. Published online 2009 May 27. doi: 10.1186/1471-2199-10-51.PMCID: PMC2695444 Cloning and analysis of a bifunctional methyltransferase/restriction endonuclease TspGWI, the prototype of a Thermus sp. enzyme family Agnieszka Zylicz-Stachula, Janusz M Bujnicki, and Piotr M Skowron BMC Mol Biol. 2009; 10: 52. Published online 2009 May 29. doi: 10.1186/1471-2199-10-52.PMCID: PMC2700111 Expanded alternative splice isoform profiling of the mouse Cav3.1/α1G T-type calcium channel Wayne L Ernst and Jeffrey L Noebels BMC Mol Biol. 2009; 10: 53. Published online 2009 May 29. doi: 10.1186/1471-2199-10-53.PMCID: PMC2696442 Reference genes for QRT-PCR tested under various stress conditions in Folsomia candida and Orchesella cincta (Insecta, Collembola) Muriel E de Boer, Tjalf E de Boer, Janine Mariën, Martijn JTN Timmermans, Benjamin Nota, Nico M van Straalen, Jacintha Ellers, and Dick Roelofs BMC Mol Biol. 2009; 10: 54. Published online 2009 June 1. doi: 10.1186/1471-2199-10-54.PMCID: PMC2698932 RNF168, a new RING finger, MIU-containing protein that modifies chromatin by ubiquitination of histones H2A and H2AX Sabrina Pinato, Cristina Scandiuzzi, Nadia Arnaudo, Elisabetta Citterio, Giovanni Gaudino, and Lorenza Penengo BMC Mol Biol. 2009; 10: 55. Published online 2009 June 5. doi: 10.1186/1471-2199-10-55.PMCID: PMC2699339 Validation of housekeeping genes for quantitative real-time PCR in in-vivo and in-vitro models of cerebral ischaemia Carme Gubern, Olivia Hurtado, Rocío Rodríguez, Jesús R Morales, Víctor G Romera, María A Moro, Ignacio Lizasoain, Joaquín Serena, and Judith Mallolas BMC Mol Biol. 2009; 10: 57. Published online 2009 June 16. doi: 10.1186/1471-2199-10-57.PMCID: PMC2706836 Identification, characterization and expression of novel Sex Hormone Binding Globulin alternative first exons in the human prostate Tomàs Pinós, Anna Barbosa-Desongles, Antoni Hurtado, Albert Santamaria-Martínez, Inés de Torres, Joan Morote, Jaume Reventós, and Francina Munell BMC Mol Biol. 2009; 10: 59. Published online 2009 June 17. doi: 10.1186/1471-2199-10-59.PMCID: PMC2706245 Elongation factor eEF1B modulates functions of the release factors eRF1 and eRF3 and the efficiency of translation termination in yeast Igor A Valouev, Gleb V Fominov, Elizaveta E Sokolova, Vladimir N Smirnov, and Michael D Ter-Avanesyan BMC Mol Biol. 2009; 10: 60. Published online 2009 June 22. doi: 10.1186/1471-2199-10-60.PMCID: PMC2705663 Construction of an adult barnacle (Balanus amphitrite) cDNA library and selection of reference genes for quantitative RT-PCR studies Tristano Bacchetti De Gregoris, Marco Borra, Elio Biffali, Thomas Bekel, J Grant Burgess, Richard R Kirby, and Anthony S Clare BMC Mol Biol. 2009; 10: 62. Published online 2009 June 24. doi: 10.1186/1471-2199-10-62.PMCID: PMC2713238 Selection and evaluation of reference genes for improved interrogation of microbial transcriptomes: case study with the extremophile Acidithiobacillus ferrooxidans Pamela A Nieto, Paulo C Covarrubias, Eugenia Jedlicki, David S Holmes, and Raquel Quatrini BMC Mol Biol. 2009; 10: 63. Published online 2009 June 25. doi: 10.1186/1471-2199-10-63.PMCID: PMC2713239 Identification of a novel nucleolin related protein (NRP) gene expressed during rat spermatogenesis Keerthi T Chathoth, Gayatri Ganesan, and MRS Rao BMC Mol Biol. 2009; 10: 64. Published online 2009 July 1. doi: 10.1186/1471-2199-10-64.PMCID: PMC2711064 The vasa regulatory region mediates germline expression and maternal transmission of proteins in the malaria mosquito Anopheles gambiae: a versatile tool for genetic control strategies Philippos A Papathanos, Nikolai Windbichler, Miriam Menichelli, Austin Burt, and Andrea Crisanti BMC Mol Biol. 2009; 10: 65. Published online 2009 July 2. doi: 10.1186/1471-2199-10-65.PMCID: PMC2713240 Identification of valid reference genes during the differentiation of human myoblasts Jens Stern-Straeter, Gabriel A Bonaterra, Karl Hörmann, Ralf Kinscherf, and Ulrich R Goessler BMC Mol Biol. 2009; 10: 66. Published online 2009 July 2. doi: 10.1186/1471-2199-10-66.PMCID: PMC2714309 Cooperation between NRF-2 and YY-1 transcription factors is essential for triggering the expression of the PREPL-C2ORF34 bidirectional gene pair Chien-Chang Huang and Wun-Shaing Wayne Chang BMC Mol Biol. 2009; 10: 67. Published online 2009 July 3. doi: 10.1186/1471-2199-10-67.PMCID: PMC2713978 Expression of HNF4alpha in the human and rat choroid plexus – Implications for drug transport across the blood-cerebrospinal-fluid (CSF) barrier Monika Niehof and Jürgen Borlak BMC Mol Biol. 2009; 10: 68. Published online 2009 July 3. doi: 10.1186/1471-2199-10-68.PMCID: PMC2713241 Selection and validation of a set of reliable reference genes for quantitative RT-PCR studies in the brain of the Cephalopod Mollusc Octopus vulgaris Maria Sirakov, Ilaria Zarrella, Marco Borra, Francesca Rizzo, Elio Biffali, Maria Ina Arnone, and Graziano Fiorito BMC Mol Biol. 2009; 10: 70. Published online 2009 July 14. doi: 10.1186/1471-2199-10-70.PMCID: PMC2722649 Selection of reference genes for normalisation of real-time RT-PCR in brain-stem death injury in Ovis aries Margaret Passmore, Maria Nataatmadja, and John F Fraser BMC Mol Biol. 2009; 10: 72. Published online 2009 July 23. doi: 10.1186/1471-2199-10-72.PMCID: PMC2721835 DNA binding by Corynebacterium glutamicum TetR-type transcription regulator AmtR Daniela Muhl, Nadja Jeßberger, Kristin Hasselt, Christophe Jardin, Heinrich Sticht, and Andreas Burkovski BMC Mol Biol. 2009; 10: 73. Published online 2009 July 23. doi: 10.1186/1471-2199-10-73.PMCID: PMC2723105 Transcription of the rat testis-specific Rtdpoz-T1 and -T2 retrogenes during embryo development: co-transcription and frequent exonisation of transposable element sequences Chiu-Jung Huang, Wan-Yi Lin, Che-Ming Chang, and Kong-Bung Choo BMC Mol Biol. 2009; 10: 74. Published online 2009 July 25. doi: 10.1186/1471-2199-10-74.PMCID: PMC2724483 Characterisation of urokinase plasminogen activator receptor variants in human airway and peripheral cells Ceri E Stewart and Ian Sayers BMC Mol Biol. 2009; 10: 75. Published online 2009 July 28. doi: 10.1186/1471-2199-10-75.PMCID: PMC2724484 Multiple histone modifications in euchromatin promote heterochromatin formation by redundant mechanisms in Saccharomyces cerevisiae Kitty F Verzijlbergen, Alex W Faber, Iris JE Stulemeijer, and Fred van Leeuwen BMC Mol Biol. 2009; 10: 76. Published online 2009 July 28. doi: 10.1186/1471-2199-10-76.PMCID: PMC2724485 Targeted suppression of heme oxygenase-1 by small interference RNAs inhibits the production of bilirubin in neonatal rat with hyperbilirubinemia Jinyong Wu, Wen Su, Youxin Jin, Yi Shi, Chune Li, Wenwei Zhong, Xuehong Zhang, Zili Zhang, and Zhenwei Xia BMC Mol Biol. 2009; 10: 77. Published online 2009 August 1. doi: 10.1186/1471-2199-10-77.PMCID: PMC2726144 Reference gene selection for head and neck squamous cell carcinoma gene expression studies Benjamin Lallemant, Alexandre Evrard, Christophe Combescure, Heliette Chapuis, Guillaume Chambon, Caroline Raynal, Christophe Reynaud, Omar Sabra, Dominique Joubert, Frédéric Hollande, Jean-Gabriel Lallemant, Serge Lumbroso, and Jean-Paul Brouillet BMC Mol Biol. 2009; 10: 78. Published online 2009 August 3. doi: 10.1186/1471-2199-10-78.PMCID: PMC2729078 Selection of reference genes for expression studies with fish myogenic cell cultures Neil I Bower and Ian A Johnston BMC Mol Biol. 2009; 10: 80. Published online 2009 August 10. doi: 10.1186/1471-2199-10-80.PMCID: PMC2736950 Natural antisense transcript of natriuretic peptide precursor A (NPPA): structural organization and modulation of NPPA expression Tarmo Annilo, Katrin Kepp, and Maris Laan BMC Mol Biol. 2009; 10: 81. Published online 2009 August 11. doi: 10.1186/1471-2199-10-81.PMCID: PMC2731763 Functional mapping of the fission yeast DNA polymerase δ B-subunit Cdc1 by site-directed and random pentapeptide insertion mutagenesis Javier Sanchez Garcia, Andrey G Baranovskiy, Elena V Knatko, Fiona C Gray, Tahir H Tahirov, and Stuart A MacNeill BMC Mol Biol. 2009; 10: 82. Published online 2009 August 17. doi: 10.1186/1471-2199-10-82.PMCID: PMC2734569 Regulation of Neph3 gene in podocytes – key roles of transcription factors NF-κB and Sp1 Mervi Ristola, Satu Arpiainen, Moin A Saleem, Peter W Mathieson, Gavin I Welsh, Sanna Lehtonen, and Harry Holthöfer BMC Mol Biol. 2009; 10: 83. Published online 2009 August 24. doi: 10.1186/1471-2199-10-83.PMCID: PMC2736951 Loss of the insulator protein CTCF during nematode evolution Peter Heger, Birger Marin, and Einhard Schierenberg BMC Mol Biol. 2009; 10: 84. Published online 2009 August 27. doi: 10.1186/1471-2199-10-84.PMCID: PMC2749850 YY1 is autoregulated through its own DNA-binding sites Jeong Do Kim, Sungryul Yu, and Joomyeong Kim BMC Mol Biol. 2009; 10: 85. Published online 2009 August 27. doi: 10.1186/1471-2199-10-85.PMCID: PMC2743690 Molecular analysis of Ku redox regulation Sara M Bennett, Tracy M Neher, Andrea Shatilla, and John J Turchi BMC Mol Biol. 2009; 10: 86. Published online 2009 August 28. doi: 10.1186/1471-2199-10-86.PMCID: PMC2741464 Promoter analysis of the rabbit POU5F1 gene and its expression in preimplantation stage embryos Julianna Kobolak, Katalin Kiss, Zsuzsanna Polgar, Solomon Mamo, Claire Rogel-Gaillard, Zsuzsanna Tancos, Istvan Bock, Arpad G Baji, Krisztina Tar, Melinda K Pirity, and Andras Dinnyes BMC Mol Biol. 2009; 10: 88. Published online 2009 September 4. doi: 10.1186/1471-2199-10-88.PMCID: PMC2751759 Interaction of ZEB and Histone Deacetylase with the PLDLS-binding cleft region of monomeric C-terminal Binding Protein 2 Ling-Jun Zhao, M Kuppuswamy, S Vijayalingam, and G Chinnadurai BMC Mol Biol. 2009; 10: 89. Published online 2009 September 15. doi: 10.1186/1471-2199-10-89.PMCID: PMC2749851 Characterization of bovine miRNAs by sequencing and bioinformatics analysis Weiwu Jin, Jason R Grant, Paul Stothard, Stephen S Moore, and Le Luo Guan BMC Mol Biol. 2009; 10: 90. Published online 2009 September 16. doi: 10.1186/1471-2199-10-90.PMCID: PMC2761914 From sequence to dynamics: the effects of transcription factor and polymerase concentration changes on activated and repressed promoters Abel González Pérez, Vladimir Espinosa Angarica, Julio Collado-Vides, and Ana Tereza Ribeiro Vasconcelos BMC Mol Biol. 2009; 10: 92. Published online 2009 September 22. doi: 10.1186/1471-2199-10-92.PMCID: PMC2761915 Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR Ruibo Hu, Chengming Fan, Hongyu Li, Qingzhu Zhang, and Yong-Fu Fu BMC Mol Biol. 2009; 10: 93. Published online 2009 September 28. doi: 10.1186/1471-2199-10-93.PMCID: PMC2761916 Validation of suitable house keeping genes for hypoxia-cultured human chondrocytes Casper Bindzus Foldager, Samir Munir, Michael Ulrik-Vinther, Kjeld Søballe, Cody Bünger, and Martin Lind BMC Mol Biol. 2009; 10: 94. Published online 2009 October 9. doi: 10.1186/1471-2199-10-94.PMCID: PMC2764705 A small intergenic region drives exclusive tissue-specific expression of the adjacent genes in Arabidopsis thaliana Hernán G Bondino and Estela M Valle BMC Mol Biol. 2009; 10: 95. Published online 2009 October 16. doi: 10.1186/1471-2199-10-95.PMCID: PMC2772851 Dual effect of a single nucleotide polymorphism in the first intron of the porcine Secreted phosphoprotein 1 gene: allele-specific binding of C/EBP beta and activation of aberrant splicing Eduard Muráni, Siriluck Ponsuksili, Hans-Martin Seyfert, Xuanming Shi, and Klaus Wimmers BMC Mol Biol. 2009; 10: 96. Published online 2009 October 21. doi: 10.1186/1471-2199-10-96.PMCID: PMC2773772 Preliminary molecular characterization of the human pathogen Angiostrongylus cantonensis Hualiang He, Mei Cheng, Xiao Yang, Jinxiu Meng, Ai He, Xiaoying Zheng, Zhuoya Li, Pengjuan Guo, Zhihua Pan, and Ximei Zhan BMC Mol Biol. 2009; 10: 97. Published online 2009 October 25. doi: 10.1186/1471-2199-10-97.PMCID: PMC2774698 RAD51 paralogs promote homology-directed repair at diversifying immunoglobulin V regions Ellen C Ordinario, Munehisa Yabuki, Priya Handa, W Jason Cummings, and Nancy Maizels BMC Mol Biol. 2009; 10: 98. Published online 2009 October 28. doi: 10.1186/1471-2199-10-98.PMCID: PMC2774322 Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae Marie-Ange Teste, Manon Duquenne, Jean M François, and Jean-Luc Parrou BMC Mol Biol. 2009; 10: 99. Published online 2009 October 30. doi: 10.1186/1471-2199-10-99.PMCID: PMC2776018 Methodology Articles Optimal use of tandem biotin and V5 tags in ChIP assays Katarzyna E Kolodziej, Farzin Pourfarzad, Ernie de Boer, Sanja Krpic, Frank Grosveld, and John Strouboulis BMC Mol Biol. 2009; 10: 6. Published online 2009 February 5. doi: 10.1186/1471-2199-10-6.PMCID: PMC2644297 Selection of suitable housekeeping genes for expression analysis in glioblastoma using quantitative RT-PCR Valeria Valente, Silvia A Teixeira, Luciano Neder, Oswaldo K Okamoto, Sueli M Oba-Shinjo, Suely KN Marie, Carlos A Scrideli, Maria L Paçó-Larson, and Carlos G Carlotti, Jr BMC Mol Biol. 2009; 10: 17. Published online 2009 March 3. doi: 10.1186/1471-2199-10-17.PMCID: PMC2661085 Cloning-free regulated monitoring of reporter and gene expression Latifa al-Haj, Wijdan Al-Ahmadi, Maher Al-Saif, Omer Demirkaya, and Khalid SA Khabar BMC Mol Biol. 2009; 10: 20. Published online 2009 March 8. doi: 10.1186/1471-2199-10-20.PMCID: PMC2662838 Reverse transcription-quantitative polymerase chain reaction: description of a RIN-based algorithm for accurate data normalization Alexandre Ho-Pun-Cheung, Caroline Bascoul-Mollevi, Eric Assenat, Florence Boissière-Michot, Frédéric Bibeau, Dominic Cellier, Marc Ychou, and Evelyne Lopez-Crapez BMC Mol Biol. 2009; 10: 31. Published online 2009 April 15. doi: 10.1186/1471-2199-10-31.PMCID: PMC2679744 Identification and validation of housekeeping genes in brains of the desert locust Schistocerca gregaria under different developmental conditions Matthias B Van Hiel, Pieter Van Wielendaele, Liesbet Temmerman, Sofie Van Soest, Kristel Vuerinckx, Roger Huybrechts, Jozef Vanden Broeck, and Gert Simonet BMC Mol Biol. 2009; 10: 56. Published online 2009 June 9. doi: 10.1186/1471-2199-10-56.PMCID: PMC2700112 Improved long-term expression from helper virus-free HSV-1 vectors packaged using combinations of mutated HSV-1 proteins that include the UL13 protein kinase and specific components of the VP16 transcriptional complex Meng Liu, Xiaodan Wang, and Alfred I Geller BMC Mol Biol. 2009; 10: 58. Published online 2009 June 16. doi: 10.1186/1471-2199-10-58.PMCID: PMC2709626 A strategy for enrichment of claudins based on their affinity to Clostridium perfringens enterotoxin Dörte Lohrberg, Eberhard Krause, Michael Schümann, Jörg Piontek, Lars Winkler, Ingolf E Blasig, and Reiner F Haseloff BMC Mol Biol. 2009; 10: 61. Published online 2009 June 22. doi: 10.1186/1471-2199-10-61.PMCID: PMC2713237 High quality RNA from multiple brain regions simultaneously acquired by laser capture microdissection Wei-Zhi Wang, Franziska M Oeschger, Sheena Lee, and Zoltán Molnár BMC Mol Biol. 2009; 10: 69. Published online 2009 July 6. doi: 10.1186/1471-2199-10-69.PMCID: PMC2713242 Analysis of current and alternative phenol based RNA extraction methodologies for cyanobacteria Fernando Lopes Pinto, Anders Thapper, Wolfgang Sontheim, and Peter Lindblad BMC Mol Biol. 2009; 10: 79. Published online 2009 August 7. doi: 10.1186/1471-2199-10-79.PMCID: PMC2729743 Multigene expression of protein complexes by iterative modification of genomic Bacmid DNA Rob J Noad, Meredith Stewart, Mark Boyce, Cristina C Celma, Keith R Willison, and Polly Roy BMC Mol Biol. 2009; 10: 87. Published online 2009 September 2. doi: 10.1186/1471-2199-10-87.PMCID: PMC2749033 Quadruple 9-mer-based protein binding microarray with DsRed fusion protein Min-Jeong Kim, Tae-Ho Lee, Yoon-Mok Pahk, Yul-Ho Kim, Hyang-Mi Park, Yang Do Choi, Baek Hie Nahm, and Yeon-Ki Kim BMC Mol Biol. 2009; 10: 91. Published online 2009 September 18. doi: 10.1186/1471-2199-10-91.PMCID: PMC2754467 Evaluation of real-time PCR endogenous control genes for analysis of gene expression in bovine endometrium Caroline G Walker, Susanne Meier, Murray D Mitchell, John R Roche, and Mathew Littlejohn BMC Mol Biol. 2009; 10: 100. Published online 2009 November 1. doi: 10.1186/1471-2199-10-100.PMCID: PMC2774697
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