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Volume 12;  2012

Research Articles

Molecular analysis of methanogenic archaea in the forestomach of the alpaca (Vicugna pacos)
Benoit St-Pierre, André-Denis G Wright
BMC Microbiol. 2012; 12: 1. Published online 2012 January 5. doi: 10.1186/1471-2180-12-1
PMCID:
PMC3292460
Abstract Full Text PDF–388K Supplementary Material
Bacillus anthracis-derived edema toxin (ET) counter-regulates movement of neutrophils and macromolecules through the endothelial paracellular pathway
Chinh Nguyen, Chiguang Feng, Min Zhan, Alan S Cross, Simeon E Goldblum
BMC Microbiol. 2012; 12: 2. Published online 2012 January 9. doi: 10.1186/1471-2180-12-2
PMCID:
PMC3277462
Abstract Full Text PDF–371K Supplementary Material
Endophytic fungal association via gibberellins and indole acetic acid can improve plant growth under abiotic stress: an example of Paecilomyces formosus LHL10
Abdul Latif Khan, Muhammad Hamayun, Sang-Mo Kang, Yoon-Ha Kim, Hee-Young Jung, Joong-Hwan Lee, In-Jung Lee
BMC Microbiol. 2012; 12: 3. Published online 2012 January 12. doi: 10.1186/1471-2180-12-3
PMCID:
PMC3268082
Abstract Full Text PDF–509K Supplementary Material
Effect of modeled reduced gravity conditions on bacterial morphology and physiology
Raja Vukanti, Michael A Model, Laura G Leff
BMC Microbiol. 2012; 12: 4. Published online 2012 January 12. doi: 10.1186/1471-2180-12-4
PMCID:
PMC3274431
Abstract Full Text PDF–1.2M
Thin-film fixed-bed reactor (TFFBR) for solar photocatalytic inactivation of aquaculture pathogen Aeromonas hydrophila
Sadia J Khan, Robert H Reed, Mohammad G Rasul
BMC Microbiol. 2012; 12: 5. Published online 2012 January 13. doi: 10.1186/1471-2180-12-5
PMCID:
PMC3274425
Abstract Full Text PDF–1.3M
Role of Mycobacterium tuberculosis pknD in the Pathogenesis of central nervous system tuberculosis
Nicholas A Be, William R Bishai, Sanjay K Jain
BMC Microbiol. 2012; 12: 7. Published online 2012 January 13. doi: 10.1186/1471-2180-12-7
PMCID:
PMC3322341
Abstract Full Text PDF–3.3M Supplementary Material
Interleukin-8 is the single most up-regulated gene in whole genome profiling of H. pylori exposed gastric epithelial cells
Lars L Eftang, Ying Esbensen, Tone M Tannæs, Ida RK Bukholm, Geir Bukholm
BMC Microbiol. 2012; 12: 9. Published online 2012 January 17. doi: 10.1186/1471-2180-12-9
PMCID:
PMC3292955
Abstract Full Text PDF–1.3M Supplementary Material
Characterisation of the mgo operon in Pseudomonas syringae pv. syringae UMAF0158 that is required for mangotoxin production
Eva Arrebola, Víctor J Carrión, Francisco M Cazorla, Alejandro Pérez-García, Jesús Murillo, Antonio de Vicente
BMC Microbiol. 2012; 12: 10. Published online 2012 January 17. doi: 10.1186/1471-2180-12-10
PMCID:
PMC3298696
Abstract Full Text PDF–2.2M Supplementary Material
Dominance of multidrug resistant CC271 clones in macrolide-resistant streptococcus pneumoniae in Arizona
Jolene R Bowers, Elizabeth M Driebe, Jennifer L Nibecker, Bette R Wojack, Derek S Sarovich, Ada H Wong, Pius M Brzoska, Nathaniel Hubert, Andrew Knadler, Lindsey M Watson, David M Wagner, Manohar R Furtado, Michael Saubolle, David M Engelthaler, Paul S Keim
BMC Microbiol. 2012; 12: 12. Published online 2012 January 18. doi: 10.1186/1471-2180-12-12
PMCID:
PMC3285076
Abstract Full Text PDF–349K
Seroepidemiology of Klebsiella pneumoniae colonizing the intestinal tract of healthy chinese and overseas chinese adults in Asian countries
Yi-Tsung Lin, L Kristopher Siu, Jung-Chung Lin, Te-Li Chen, Chih-Peng Tseng, Kuo-Ming Yeh, Feng-Yee Chang, Chang-Phone Fung
BMC Microbiol. 2012; 12: 13. Published online 2012 January 19. doi: 10.1186/1471-2180-12-13
PMCID:
PMC3273430
Abstract Full Text PDF–842K
The role of MglA for adaptation to oxidative stress of Francisella tularensis LVS
Marie Honn, Helena Lindgren, Anders Sjöstedt
BMC Microbiol. 2012; 12: 14. Published online 2012 January 21. doi: 10.1186/1471-2180-12-14
PMCID:
PMC3305382
Abstract Full Text PDF–1.0M
Lactobacillus rhamnosus GR-1 enhances NF-kappaB activation in Escherichia coli-stimulated urinary bladder cells through TLR4
Mattias Karlsson, Nikolai Scherbak, Gregor Reid, Jana Jass
BMC Microbiol. 2012; 12: 15. Published online 2012 January 22. doi: 10.1186/1471-2180-12-15
PMCID:
PMC3305351
Abstract Full Text PDF–2.7M
Opposing roles of σB and σB-controlled SpoVG in the global regulation of esxA in Staphylococcus aureus
Bettina Schulthess, Dominik A Bloes, Brigitte Berger-Bächi
BMC Microbiol. 2012; 12: 17. Published online 2012 January 24. doi: 10.1186/1471-2180-12-17
PMCID:
PMC3313859
Abstract Full Text PDF–842K Supplementary Material
Molecular characterization of a mosaic locus in the genome of 'Candidatus Liberibacter asiaticus'
Xuefeng Wang, Changyong Zhou, Xiaoling Deng, Huanan Su, Jianchi Chen
BMC Microbiol. 2012; 12: 18. Published online 2012 January 26. doi: 10.1186/1471-2180-12-18
PMCID:
PMC3296602
Abstract Full Text PDF–1018K Supplementary Material
Chemotaxis of Burkholderia sp. Strain SJ98 towards chloronitroaromatic compounds that it can metabolise
Janmejay Pandey, Narinder K Sharma, Fazlurrahman Khan, Anuradha Ghosh, John G Oakeshott, Rakesh K Jain, Gunjan Pandey
BMC Microbiol. 2012; 12: 19. Published online 2012 February 1. doi: 10.1186/1471-2180-12-19
PMCID:
PMC3293717
Abstract Full Text PDF–2.9M Supplementary Material
Defining the "core microbiome" of the microbial communities in the tonsils of healthy pigs
Beth A Lowe, Terence L Marsh, Natasha Isaacs-Cosgrove, Roy N Kirkwood, Matti Kiupel, Martha H Mulks
BMC Microbiol. 2012; 12: 20. Published online 2012 February 7. doi: 10.1186/1471-2180-12-20
PMCID:
PMC3297519
Abstract Full Text PDF–2.3M Supplementary Material
Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction
Sang-Hoon Kim, Christina Harzman, John K Davis, Rachel Hutcheson, Joan B Broderick, Terence L Marsh, James M Tiedje
BMC Microbiol. 2012; 12: 21. Published online 2012 February 8. doi: 10.1186/1471-2180-12-21
PMCID:
PMC3306737
Abstract Full Text PDF–539K
A comparison of two distinct murine macrophage gene expression profiles in response to Leishmania amazonensis infection
Christian M Probst, Rodrigo A Silva, Juliana P B Menezes, Tais F Almeida, Ivana N Gomes, Andréia C Dallabona, Luiz S Ozaki, Gregory A Buck, Daniela P Pavoni, Marco A Krieger, Patrícia S T Veras
BMC Microbiol. 2012; 12: 22. Published online 2012 February 9. doi: 10.1186/1471-2180-12-22
PMCID:
PMC3313874
Abstract Full Text PDF–2.0M Supplementary Material
The tyrosyl-tRNA synthetase like gene located in the tyramine biosynthesis cluster of Enterococcus durans is transcriptionally regulated by tyrosine concentration and extracellular pH
Daniel M Linares, Maria Fernández, Beatriz Del-Río, Victor Ladero, Maria Cruz Martin, Miguel A Alvarez
BMC Microbiol. 2012; 12: 23. Published online 2012 February 14. doi: 10.1186/1471-2180-12-23
PMCID:
PMC3315439
Abstract Full Text PDF–1.0M
Antiadhesive activity of the biosurfactant pseudofactin II secreted by the Arctic bacterium Pseudomonas fluorescens BD5
Tomasz Janek, Marcin Łukaszewicz, Anna Krasowska
BMC Microbiol. 2012; 12: 24. Published online 2012 February 23. doi: 10.1186/1471-2180-12-24
PMCID:
PMC3310744
Abstract Full Text PDF–852K
Influence of wet distillers grains diets on beef cattle fecal bacterial community structure
William C Rice, Michael L Galyean, Stephen B Cox, Scot E Dowd, N Andy Cole
BMC Microbiol. 2012; 12: 25. Published online 2012 February 24. doi: 10.1186/1471-2180-12-25
PMCID:
PMC3305651
Abstract Full Text PDF–1.9M Supplementary Material
On the viability of Escherichia coli cells lacking DNA topoisomerase I
Anna Stockum, Robert G Lloyd, Christian J Rudolph
BMC Microbiol. 2012; 12: 26. Published online 2012 February 28. doi: 10.1186/1471-2180-12-26
PMCID:
PMC3313902
Abstract Full Text PDF–1.2M Supplementary Material
Identification of the para-nitrophenol catabolic pathway, and characterization of three enzymes involved in the hydroquinone pathway, in pseudomonas sp. 1-7
Shuangyu Zhang, Wen Sun, Li Xu, Xiaomei Zheng, Xiaoyu Chu, Jian Tian, Ningfeng Wu, Yunliu Fan
BMC Microbiol. 2012; 12: 27. Published online 2012 March 2. doi: 10.1186/1471-2180-12-27
PMCID:
PMC3324391
Abstract Full Text PDF–1.7M Supplementary Material
Characterization of LysB4, an endolysin from the Bacillus cereus-infecting bacteriophage B4
Bokyung Son, Jiae Yun, Jeong-A Lim, Hakdong Shin, Sunggi Heu, Sangryeol Ryu
BMC Microbiol. 2012; 12: 33. Published online 2012 March 15. doi: 10.1186/1471-2180-12-33
PMCID:
PMC3315420
Abstract Full Text PDF–2.6M
Role of the gerA operon in L-alanine germination of Bacillus licheniformis spores
Irene S Løvdal, Cecilie From, Elisabeth H Madslien, Kristin Cecilia S Romundset, Elin Klufterud, Jan Thomas Rosnes, Per Einar Granum
BMC Microbiol. 2012; 12: 34. Published online 2012 March 15. doi: 10.1186/1471-2180-12-34
PMCID:
PMC3359204
Abstract Full Text PDF–512K
Impact of antibiotic treatments on the expression of the R plasmid tra genes and on the host innate immune activity during pRAS1 bearing Aeromonas hydrophila infection in zebrafish (Danio rerio)
Leon Cantas, Paul J Midtlyng, Henning Sørum
BMC Microbiol. 2012; 12: 37. Published online 2012 March 19. doi: 10.1186/1471-2180-12-37
PMCID:
PMC3340321
Abstract Full Text PDF–704K
Lactobacillus acidophilus ameliorates H. pylori-induced gastric inflammation by inactivating the Smad7 and NFκB pathways
Yao-Jong Yang, Ching-Chun Chuang, Hsiao-Bai Yang, Cheng-Chan Lu, Bor-Shyang Sheu
BMC Microbiol. 2012; 12: 38. Published online 2012 March 19. doi: 10.1186/1471-2180-12-38
PMCID:
PMC3340303
Abstract Full Text PDF–1.6M
Identification of genes expressed in cultures of E. coli lysogens carrying the Shiga toxin-encoding prophage Φ24B
Laura M Riley, Marta Veses-Garcia, Jeffrey D Hillman, Martin Handfield, Alan J McCarthy, Heather E Allison
BMC Microbiol. 2012; 12: 42. Published online 2012 March 22. doi: 10.1186/1471-2180-12-42
PMCID:
PMC3342100
Abstract Full Text PDF–635K Supplementary Material
Genomes-based phylogeny of the genus Xanthomonas
Luis M Rodriguez-R, Alejandro Grajales, Mario L Arrieta-Ortiz, Camilo Salazar, Silvia Restrepo, Adriana Bernal
BMC Microbiol. 2012; 12: 43. Published online 2012 March 23. doi: 10.1186/1471-2180-12-43
PMCID:
PMC3359215
Abstract Full Text PDF–928K Supplementary Material
Activation of the RpoN-RpoS regulatory pathway during the enzootic life cycle of Borrelia burgdorferi
Zhiming Ouyang, Sukanya Narasimhan, Girish Neelakanta, Manish Kumar, Utpal Pal, Erol Fikrig, Michael V Norgard
BMC Microbiol. 2012; 12: 44. Published online 2012 March 23. doi: 10.1186/1471-2180-12-44
PMCID:
PMC3320556
Abstract Full Text PDF–616K
Gene cluster analysis for the biosynthesis of elgicins, novel lantibiotics produced by paenibacillus elgii B69
Yi Teng, Wenpeng Zhao, Chaodong Qian, Ou Li, Liang Zhu, Xuechang Wu
BMC Microbiol. 2012; 12: 45. Published online 2012 March 26. doi: 10.1186/1471-2180-12-45
PMCID:
PMC3337247
Abstract Full Text PDF–2.0M
Effects of probiotics and antibiotics on the intestinal homeostasis in a computer controlled model of the large intestine
Ateequr Rehman, Femke-Anouska Heinsen, Marjorie E Koenen, Koen Venema, Henrik Knecht, Stephan Hellmig, Stefan Schreiber, Stephan J Ott
BMC Microbiol. 2012; 12: 47. Published online 2012 March 27. doi: 10.1186/1471-2180-12-47
PMCID:
PMC3338381
Abstract Full Text PDF–746K
Clostridium difficile genotypes other than ribotype 078 that are prevalent among human, animal and environmental isolates
Sandra Janezic, Matjaz Ocepek, Valerija Zidaric, Maja Rupnik
BMC Microbiol. 2012; 12: 48. Published online 2012 March 27. doi: 10.1186/1471-2180-12-48
PMCID:
PMC3353227
Abstract Full Text PDF–1.2M Supplementary Material
Control of intestinal bacterial proliferation in regulation of lifespan in Caenorhabditis elegans
Cynthia Portal-Celhay, Ellen R Bradley, Martin J Blaser
BMC Microbiol. 2012; 12: 49. Published online 2012 March 27. doi: 10.1186/1471-2180-12-49
PMCID:
PMC3342110
Abstract Full Text PDF–1.0M
tkt1, located on a novel pathogenicity island, is prevalent in avian and human extraintestinal pathogenic Escherichia coli
Ganwu Li, Subhashinie Kariyawasam, Kelly A Tivendale, Yvonne Wannemuehler, Christa Ewers, Lothar H Wieler, Catherine M Logue, Lisa K Nolan
BMC Microbiol. 2012; 12: 51. Published online 2012 April 3. doi: 10.1186/1471-2180-12-51
PMCID:
PMC3349570
Abstract Full Text PDF–744K
Identification and diversity of multiresistant Corynebacterium striatum clinical isolates by MALDI-TOF mass spectrometry and by a multigene sequencing approach
Margarita Gomila, Feliu Renom, Maria del Carmen Gallegos, Margarita Garau, Dolores Guerrero, Joan B Soriano, Jorge Lalucat
BMC Microbiol. 2012; 12: 52. Published online 2012 April 4. doi: 10.1186/1471-2180-12-52
PMCID:
PMC3348057
Abstract Full Text PDF–538K Supplementary Material
Fitness of Escherichia coli strains carrying expressed and partially silent IncN and IncP1 plasmids
Bruce Humphrey, Nicholas R Thomson, Christopher M Thomas, Karen Brooks, Mandy Sanders, Anne A Delsol, John M Roe, Peter M Bennett, Virve I Enne
BMC Microbiol. 2012; 12: 53. Published online 2012 April 4. doi: 10.1186/1471-2180-12-53
PMCID:
PMC3347995
Abstract Full Text PDF–332K
BB0324 and BB0028 are constituents of the Borrelia burgdorferi β-barrel assembly machine (BAM) complex
Tiffany R Lenhart, Melisha R Kenedy, Xiuli Yang, Utpal Pal, Darrin R Akins
BMC Microbiol. 2012; 12: 60. Published online 2012 April 20. doi: 10.1186/1471-2180-12-60
PMCID:
PMC3356241
Abstract Full Text PDF–1.2M
Construction of Bordetella pertussis strains with enhanced production of genetically-inactivated Pertussis Toxin and Pertactin by unmarked allelic exchange
Wasin Buasri, Attawut Impoolsup, Chuenchit Boonchird, Anocha Luengchaichawange, Pannipa Prompiboon, Jean Petre, Watanalai Panbangred
BMC Microbiol. 2012; 12: 61. Published online 2012 April 23. doi: 10.1186/1471-2180-12-61
PMCID:
PMC3349578
Abstract Full Text PDF–2.7M
Hypochlorous acid and hydrogen peroxide-induced negative regulation of Salmonella enterica serovar Typhimurium ompW by the response regulator ArcA
Eduardo H Morales, Iván L Calderón, Bernardo Collao, Fernando Gil, Steffen Porwollik, Michael McClelland, Claudia P Saavedra
BMC Microbiol. 2012; 12: 63. Published online 2012 May 22. doi: 10.1186/1471-2180-12-63
PMCID:
PMC3358236
Abstract Full Text PDF–935K

Methodology Article

Molecular probe technology detects bacteria without culture
Richard W Hyman, Robert P St Onge, Hyunsung Kim, John S Tamaresis, Molly Miranda, Ana Maria Aparicio, Marilyn Fukushima, Nader Pourmand, Linda C Giudice, Ronald W Davis
BMC Microbiol. 2012; 12: 29. Published online 2012 March 9. doi: 10.1186/1471-2180-12-29
PMCID:
PMC3316761
Abstract Full Text PDF–432K Supplementary Material

Correction

Correction: Campylobacter jejuni dsb gene expression is regulated by iron in a Fur-dependent manner and by a translational coupling mechanism
Anna D Grabowska, Michał P Wandel, Anna M Łasica, Monika Nesteruk, Paula Roszczenko, Agnieszka Wyszyńska, Renata Godlewska, Elzbieta K Jagusztyn-Krynicka
BMC Microbiol. 2012; 12: 58. Published online 2012 April 19. doi: 10.1186/1471-2180-12-58
Corrects:
BMC Microbiol. 2011; 11: 166.
PMCID:
PMC3348000
Correction PDF–130K Original Article
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