|
|
Other Issues: Journal List
|
previous
|
next
|
latest
|
archive
Database BACTIBASE second release: a database and tool platform for bacteriocin characterization Riadh Hammami, Abdelmajid Zouhir, Christophe Le Lay, Jeannette Ben Hamida, and Ismail Fliss PMCID: PMC2824694 GASdb: a large-scale and comparative exploration database of glycosyl hydrolysis systems Fengfeng Zhou, Huiling Chen, and Ying Xu PMCID: PMC2838879 CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources David Goudenège, Stéphane Avner, Céline Lucchetti-Miganeh, and Frédérique Barloy-Hubler PMCID: PMC2850352 PseudoMLSA: a database for multigenic sequence analysis of Pseudomonas species Antoni Bennasar, Magdalena Mulet, Jorge Lalucat, and Elena García-Valdés PMCID: PMC2873489 Research articles Molecular characterization of Legionella pneumophila-induced interleukin-8 expression in T cells Reika Takamatsu, Hiromitsu Teruya, Eriko Takeshima, Chie Ishikawa, Kunihiro Matsumoto, Naofumi Mukaida, Jian-Dong Li, Klaus Heuner, Futoshi Higa, Jiro Fujita, and Naoki Mori PMCID: PMC2824691 Corynebacterium diphtheriae invasion-associated protein (DIP1281) is involved in cell surface organization, adhesion and internalization in epithelial cells Lisa Ott, Martina Höller, Roman G Gerlach, Michael Hensel, Johannes Rheinlaender, Tilman E Schäffer, and Andreas Burkovski PMCID: PMC2827468 Virulence regulator AphB enhances toxR transcription in Vibrio cholerae Xiao Xu, Andrew M Stern, Zhi Liu, Biao Kan, and Jun Zhu PMCID: PMC2806343 Impact of a synbiotic food on the gut microbial ecology and metabolic profiles Beatrice Vitali, Maurice Ndagijimana, Federica Cruciani, Paola Carnevali, Marco Candela, Maria Elisabetta Guerzoni, and Patrizia Brigidi PMCID: PMC2806344 The capsule of Porphyromonas gingivalis reduces the immune response of human gingival fibroblasts Jorg Brunner, Nina Scheres, Nawal B El Idrissi, Dong M Deng, Marja L Laine, Arie J van Winkelhoff, and Wim Crielaard PMCID: PMC2817674 Characterization of a variant vlhA gene of Mycoplasma synoviae, strain WVU 1853, with a highly divergent haemagglutinin region Awatef Béjaoui Khiari, Ibtissem Guériri, Radhia Ben Mohammed, and Boutheina Ben Abdelmoumen Mardassi PMCID: PMC2825196 New structural and functional defects in polyphosphate deficient bacteria: A cellular and proteomic study Cristian Varela, Cecilia Mauriaca, Alberto Paradela, Juan P Albar, Carlos A Jerez, and Francisco P Chávez PMCID: PMC2817675 Genetic analysis of the Staphylococcus epidermidis Macromolecular Synthesis Operon: Serp1129 is an ATP binding protein and sigA transcription is regulated by both σA- and σB-dependent promoters Kendall A Bryant, Lauren C Kinkead, Marilynn A Larson, Steven H Hinrichs, and Paul D Fey PMCID: PMC2824700 Protection against Pseudomonas aeruginosa lung infection in mice by recombinant OprF-pulsed dendritic cell immunization Lucia Peluso, Cristiana de Luca, Silvia Bozza, Antonio Leonardi, Gloria Giovannini, Alfonso Lavorgna, Gaetano De Rosa, Massimo Mascolo, Loredana Ortega De Luna, Maria Rosaria Catania, Luigina Romani, and Fabio Rossano PMCID: PMC2820439 Bacterial diversity in faeces from polar bear (Ursus maritimus) in Arctic Svalbard Trine Glad, Pål Bernhardsen, Kaare M Nielsen, Lorenzo Brusetti, Magnus Andersen, Jon Aars, and Monica A Sundset PMCID: PMC2822771 A multiattribute utility evaluation of different methods for the detection of enteric protozoa causing diarrhea in AIDS patients Lekha Tuli, Deepak K Singh, Anil K Gulati, Shyam Sundar, and Tribhuban M Mohapatra PMCID: PMC2820438 Identification of possible targets of the Aspergillus fumigatus CRZ1 homologue, CrzA Frederico M Soriani, Iran Malavazi, Marcela Savoldi, Eduardo Espeso, Taísa M Dinamarco, Luciano AS Bernardes, Márcia ES Ferreira, Maria Helena S Goldman, and Gustavo H Goldman PMCID: PMC2818617 Effects of apples and specific apple components on the cecal environment of conventional rats: role of apple pectin Tine R Licht, Max Hansen, Anders Bergström, Morten Poulsen, Britta N Krath, Jaroslaw Markowski, Lars O Dragsted, and Andrea Wilcks PMCID: PMC2822772 Persistent, triple-virus co-infections in mosquito cells Nipaporn Kanthong, Nuanpan Khemnu, Sa-Nga Pattanakitsakul, Prida Malasit, and Timothy W Flegel PMCID: PMC2817673 Phenotypic and genetic diversity in Sinorhizobium meliloti and S. medicae from drought and salt affected regions of Morocco Nadia Elboutahiri, Imane Thami-Alami, and Sripada M Udupa PMCID: PMC2823721 Metabolites produced by probiotic Lactobacilli rapidly increase glucose uptake by Caco-2 cells Arun K Rooj, Yasuhiro Kimura, and Randal K Buddington PMCID: PMC2835675 Bicarbonate enhances expression of the endocarditis and biofilm associated pilus locus, ebpR-ebpABC, in Enterococcus faecalis Agathe Bourgogne, L Charlene Thomson, and Barbara E Murray PMCID: PMC2824692 Interactions between flagellar and type III secretion proteins in Chlamydia pneumoniae Chris B Stone, David C Bulir, Jodi D Gilchrist, Raman K Toor, and James B Mahony PMCID: PMC2830194 Microbiological quality of drinking water from dispensers in Italy Giorgio Liguori, Ivan Cavallotti, Antonio Arnese, Ciro Amiranda, Daniela Anastasi, and Italo F Angelillo PMCID: PMC2824693 The chitobiose transporter, chbC, is required for chitin utilization in Borrelia burgdorferi Ryan G Rhodes, Janet A Atoyan, and David R Nelson PMCID: PMC2845121 Identification of an unusual Brucella strain (BO2) from a lung biopsy in a 52 year-old patient with chronic destructive pneumonia Rebekah V Tiller, Jay E Gee, David R Lonsway, Sonali Gribble, Scott C Bell, Amy V Jennison, John Bates, Chris Coulter, Alex R Hoffmaster, and Barun K De PMCID: PMC2825194 Longitudinal survey of Staphylococcus aureus in cystic fibrosis patients using a multiple-locus variable-number of tandem-repeats analysis method Hoang Vu-Thien, Katia Hormigos, Gaëlle Corbineau, Brigitte Fauroux, Harriet Corvol, Didier Moissenet, Gilles Vergnaud, and Christine Pourcel PMCID: PMC2825195 Genetic elements associated with antimicrobial resistance in enteropathogenic Escherichia coli (EPEC) from Brazil Isabel CA Scaletsky, Tamara B Souza, Katia RS Aranda, and Iruka N Okeke PMCID: PMC2828443 Listeria monocytogenes virulence factor Listeriolysin O favors bacterial growth in co-culture with the ciliate Tetrahymena pyriformis, causes protozoan encystment and promotes bacterial survival inside cysts Valentina I Pushkareva and Svetlana A Ermolaeva PMCID: PMC2827469 Molecular epidemiology of multidrug resistant extended spectrum beta-lactamase producing Klebsiella pneumoniae at a Jamaican hospital, 2000 - 2004 Nicole A Christian, Karen Roye-Green, and Monica Smikle PMCID: PMC2824695 Identification of tomato plant as a novel host model for Burkholderia pseudomallei Yian Hoon Lee, Yahua Chen, Xuezhi Ouyang, and Yunn-Hwen Gan PMCID: PMC2823722 Proteomic comparison of the cytosolic proteins of three Bifidobacterium longum human isolates and B. longum NCC2705 Julio Aires, Patricia Anglade, Fabienne Baraige, Monique Zagorec, Marie-Christine Champomier-Vergès, and Marie-José Butel PMCID: PMC2824696 Proteomic analysis of iron acquisition, metabolic and regulatory responses of Yersinia pestis to iron starvation Rembert Pieper, Shih-Ting Huang, Prashanth P Parmar, David J Clark, Hamid Alami, Robert D Fleischmann, Robert D Perry, and Scott N Peterson PMCID: PMC2835676 Global transcriptomic response of Leptospira interrogans serovar Copenhageni upon exposure to serum Kanitha Patarakul, Miranda Lo, and Ben Adler PMCID: PMC2841595 Genetic Diversity of Salmonella enteric serovar Typhi and Paratyphi in Shenzhen, China from 2002 through 2007 Weiyuan Wu, Hui Wang, Jian Lu, Jinsong Wu, Minjun Chen, Yingchun Xu, and Yuemei Lu PMCID: PMC2824697 Staphylococcus aureus sigma B-dependent emergence of small-colony variants and biofilm production following exposure to Pseudomonas aeruginosa 4-hydroxy-2-heptylquinoline-N-oxide Gabriel Mitchell, David Lalonde Séguin, Ann-Elise Asselin, Eric Déziel, André M Cantin, Eric H Frost, Sophie Michaud, and François Malouin PMCID: PMC2824698 Serotype- and strain- dependent contribution of the sensor kinase CovS of the CovRS two-component system to Streptococcus pyogenes pathogenesis Venelina Sugareva, Regina Arlt, Tomas Fiedler, Catur Riani, Andreas Podbielski, and Bernd Kreikemeyer PMCID: PMC2823723 Escherichia coli genes that reduce the lethal effects of stress Xiulin Han, Angella Dorsey-Oresto, Muhammad Malik, Jian-Ying Wang, Karl Drlica, Xilin Zhao, and Tao Lu PMCID: PMC2824699 Genome-wide investigation and functional characterization of the β-ketoadipate pathway in the nitrogen-fixing and root-associated bacterium Pseudomonas stutzeri A1501 Danhua Li, Yongliang Yan, Shuzhen Ping, Ming Chen, Wei Zhang, Liang Li, Wenna Lin, Lizhao Geng, Wei Liu, Wei Lu, and Min Lin PMCID: PMC2907835 Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales Fabíola M Carvalho, Rangel C Souza, Fernando G Barcellos, Mariangela Hungria, and Ana Tereza R Vasconcelos PMCID: PMC2907836 Pseudomonas aeruginosa Cystic Fibrosis isolates of similar RAPD genotype exhibit diversity in biofilm forming ability in vitro Elena Deligianni, Sally Pattison, Daniel Berrar, Nigel G Ternan, Richard W Haylock, John E Moore, Stuart J Elborn, and James SG Dooley PMCID: PMC2841157 Transcriptional profiling reveals the expression of novel genes in response to various stimuli in the human dermatophyte Trichophyton rubrum Nalu TA Peres, Pablo R Sanches, Juliana P Falcão, Henrique CS Silveira, Fernanda G Paião, Fernanda CA Maranhão, Diana E Gras, Fernando Segato, Rodrigo A Cazzaniga, Mendelson Mazucato, Jeny R Cursino-Santos, Roseli Aquino-Ferreira, Antonio Rossi, and Nilce M Martinez-Rossi PMCID: PMC2831883 PFGE diversity within the methicillin-resistant Staphylococcus aureus clonal lineage ST398 Thijs Bosch, Albert J de Neeling, Leo M Schouls, Kim W van der Zwaluw, Jan AJW Kluytmans, Hajo Grundmann, and Xander W Huijsdens PMCID: PMC2850908 Development of a toxR-based loop-mediated isothermal amplification assay for detecting Vibrio parahaemolyticus Siyi Chen and Beilei Ge PMCID: PMC2838873 The cell envelope subtilisin-like proteinase is a virulence determinant for Streptococcus suis Laetitia Bonifait, Maria de la Cruz Dominguez-Punaro, Katy Vaillancourt, Christian Bart, Josh Slater, Michel Frenette, Marcelo Gottschalk, and Daniel Grenier PMCID: PMC2832634 Identification and functional characterisation of Complement Regulator Acquiring Surface Protein-1 of serum resistant Borrelia garinii OspA serotype 4 Nathalie D van Burgel, Peter Kraiczy, Tim J Schuijt, Peter F Zipfel, and Alje P van Dam PMCID: PMC2833144 Elucidation of the outer membrane proteome of Salmonella enterica serovar Typhimurium utilising a lipid-based protein immobilization technique Darren Chooneea, Roger Karlsson, Vesela Encheva, Cath Arnold, Hazel Appleton, and Haroun Shah PMCID: PMC2829538 Identification of genes involved in the mutualistic colonization of the nematode Heterorhabditis bacteriophora by the bacterium Photorhabdus luminescens Catherine A Easom, Susan A Joyce, and David J Clarke PMCID: PMC2907834 An enhancer peptide for membrane-disrupting antimicrobial peptides Satoshi Ueno, Kohtaro Kusaka, Yasushi Tamada, Hong Zhang, Masaomi Minaba, and Yusuke Kato PMCID: PMC2834666 Effect of anti-glycosphingolipid monoclonal antibodies in pathogenic fungal growth and differentiation. Characterization of monoclonal antibody MEST-3 directed to Manpα1→3Manpα1→2IPC Marcos S Toledo, Loriane Tagliari, Erika Suzuki, Claudinei M Silva, Anita H Straus, and Helio K Takahashi PMCID: PMC2831884 Sialic acid mediated transcriptional modulation of a highly conserved sialometabolism gene cluster in Haemophilus influenzae and its effect on virulence Gaynor A Jenkins, Marisol Figueira, Gaurav A Kumar, Wendy A Sweetman, Katherine Makepeace, Stephen I Pelton, Richard Moxon, and Derek W Hood PMCID: PMC2836998 Insertional mutagenesis enables cleistothecial formation in a non-mating strain of Histoplasma capsulatum Meggan C Laskowski and Alan G Smulian PMCID: PMC2834667 Inositol monophosphate phosphatase genes of Mycobacterium tuberculosis Farahnaz Movahedzadeh, Paul R Wheeler, Premkumar Dinadayala, Yossef Av-Gay, Tanya Parish, Mamadou Daffé, and Neil G Stoker PMCID: PMC2834668 Genetic adaptation of Streptococcus mutans during biofilm formation on different types of surfaces Moshe Shemesh, Avshalom Tam, Reuven Aharoni, and Doron Steinberg PMCID: PMC2838874 Toxicity of unsaturated fatty acids to the biohydrogenating ruminal bacterium, Butyrivibrio fibrisolvens Margarida RG Maia, Lal C Chaudhary, Charles S Bestwick, Anthony J Richardson, Nest McKain, Tony R Larson, Ian A Graham, and Robert J Wallace PMCID: PMC2836310 Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans Sandrine Koechler, Jessica Cleiss-Arnold, Caroline Proux, Odile Sismeiro, Marie-Agnès Dillies, Florence Goulhen-Chollet, Florence Hommais, Didier Lièvremont, Florence Arsène-Ploetze, Jean-Yves Coppée, and Philippe N Bertin PMCID: PMC2848651 The ClpP protease homologue is required for the transmission traits and cell division of the pathogen Legionella pneumophila Xiang-hui Li, Yong-lun Zeng, Ye Gao, Xiao-cong Zheng, Qin-fen Zhang, Shi-ning Zhou, and Yong-jun Lu PMCID: PMC2838875 Characterization of Φ2954, a newly isolated bacteriophage containing three dsRNA genomic segments Xueying Qiao, Yang Sun, Jian Qiao, Fabiana Di Sanzo, and Leonard Mindich PMCID: PMC2834669 Frequency and diversity of small cryptic plasmids in the genus Rahnella Wilfried Rozhon, Elena Petutschnig, Mamoona Khan, David K Summers, and Brigitte Poppenberger PMCID: PMC2831885 Diarrhea-associated biofilm formed by enteroaggregative Escherichia coli and aggregative Citrobacter freundii: a consortium mediated by putative F pili Alex L Pereira, Thiago N Silva, Ana CMM Gomes, Ana CG Araújo, and Loreny G Giugliano PMCID: PMC2836999 Characterization of mleR, a positive regulator of malolactic fermentation and part of the acid tolerance response in Streptococcus mutans André Lemme, Helena Sztajer, and Irene Wagner-Döbler PMCID: PMC2834670 The ecology of nasal colonization of Streptococcus pneumoniae, Haemophilus influenzae and Staphylococcus aureus: the role of competition and interactions with host's immune response Elisa Margolis, Andrew Yates, and Bruce R Levin PMCID: PMC2844402 Analysis of a β-helical region in the p55 domain of Helicobacter pylori vacuolating toxin Susan E Ivie, Mark S McClain, Holly M Scott Algood, D Borden Lacy, and Timothy L Cover PMCID: PMC2836311 Differential activity of innate defense antimicrobial peptides against Nocardia species Siegbert Rieg, Benjamin Meier, Eva Fähnrich, Anja Huth, Dirk Wagner, Winfried V Kern, and Hubert Kalbacher PMCID: PMC2834671 Carbon-dependent control of electron transfer and central carbon pathway genes for methane biosynthesis in the Archaean, Methanosarcina acetivorans strain C2A Lars Rohlin and Robert P Gunsalus PMCID: PMC2838876 Intestinal dysbiosis and reduced immunoglobulin-coated bacteria associated with coeliac disease in children Giada De Palma, Inmaculada Nadal, Marcela Medina, Ester Donat, Carmen Ribes-Koninckx, Miguel Calabuig, and Yolanda Sanz PMCID: PMC2843610 Modulation of iron homeostasis in macrophages by bacterial intracellular pathogens Xin Pan, Batcha Tamilselvam, Eric J Hansen, and Simon Daefler PMCID: PMC2838877 Comparative genomics of VirR regulons in Clostridium perfringens strains Antonio Frandi, Alessio Mengoni, and Matteo Brilli PMCID: PMC2838878 Filifactor alocis - involvement in periodontal biofilms Sebastian Schlafer, Birgit Riep, Ann L Griffen, Annett Petrich, Julia Hübner, Moritz Berning, Anton Friedmann, Ulf B Göbel, and Annette Moter PMCID: PMC2846919 Development of O-antigen gene cluster-specific PCRs for rapid typing six epidemic serogroups of Leptospira in China Cheng-Song Cai, Yong-Zhang Zhu, Yi Zhong, Xiao-Fang Xin, Xiu-Gao Jiang, Xiao-Li Lou, Ping He, Jin-Hong Qin, Guo-Ping Zhao, Sheng-Yue Wang, and Xiao-Kui Guo PMCID: PMC2843611 Molecular characterization of resistance to Rifampicin in an emerging hospital-associated Methicillin-resistant Staphylococcus aureus clone ST228, Spain Virginie Mick, M Angeles Domínguez, Fe Tubau, Josefina Liñares, Miquel Pujol, and Rogelio Martín PMCID: PMC2844403 Strategies of Nitrosomonas europaea 19718 to counter low dissolved oxygen and high nitrite concentrations Ran Yu and Kartik Chandran PMCID: PMC2844404 The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfa Omar Torres-Quesada, Roke I Oruezabal, Alexandra Peregrina, Edgardo Jofré, Javier Lloret, Rafael Rivilla, Nicolás Toro, and José I Jiménez-Zurdo PMCID: PMC2848018 Rapid differentiation of Francisella species and subspecies by fluorescent in situ hybridization targeting the 23S rRNA Wolf D Splettstoesser, Erik Seibold, Ella Zeman, Karlheinz Trebesius, and Andreas Podbielski PMCID: PMC2844405 Detection and quantification of 14 Campylobacter species in pet dogs reveals an increase in species richness in feces of diarrheic animals Bonnie Chaban, Musangu Ngeleka, and Janet E Hill PMCID: PMC2848019 Population dynamics of two antilisterial cheese surface consortia revealed by temporal temperature gradient gel electrophoresis Emmanuelle Roth, Susanne Miescher Schwenninger, Madlen Hasler, Elisabeth Eugster-Meier, and Christophe Lacroix PMCID: PMC2907837 Influence of 5 major Salmonella pathogenicity islands on NK cell depletion in mice infected with Salmonella enterica serovar Enteritidis Daniela Karasova, Alena Sebkova, Hana Havlickova, Frantisek Sisak, Jiri Volf, Martin Faldyna, Petra Ondrackova, Vladimir Kummer, and Ivan Rychlik PMCID: PMC2848020 Binding and activation of host plasminogen on the surface of Francisella tularensis Shawn R Clinton, James E Bina, Thomas P Hatch, Michael A Whitt, and Mark A Miller PMCID: PMC2848021 The PTS transporters of Lactobacillus gasseri ATCC 33323 Alyssa L Francl, Taksawan Thongaram, and Michael J Miller PMCID: PMC2848229 Interactions between endocarditis-derived Streptococcus gallolyticus subsp. gallolyticus isolates and human endothelial cells Tanja Vollmer, Dennis Hinse, Knut Kleesiek, and Jens Dreier PMCID: PMC2846920 Analysis of the genome content of Lactococcus garvieae by genomic interspecies microarray hybridization Mónica Aguado-Urda, Guillermo H López-Campos, José F Fernández-Garayzábal, Fernando Martín-Sánchez, Alicia Gibello, Lucas Domínguez, and María M Blanco PMCID: PMC2851595 Melanin in Fonsecaea pedrosoi: a trap for oxidative radicals Marcel ML Cunha, Anderson J Franzen, Sergio H Seabra, Marcelo H Herbst, Ney V Vugman, Luana P Borba, Wanderley de Souza, and Sonia Rozental PMCID: PMC2845570 Mosaic structure of intragenic repetitive elements in histone H1-like protein Hc2 varies within serovars of Chlamydia trachomatis Markus Klint, Mikael Thollesson, Erik Bongcam-Rudloff, Svend Birkelund, Anders Nilsson, and Björn Herrmann PMCID: PMC2848022 First insights into the genetic diversity of Mycobacterium tuberculosis isolates from HIV-infected Mexican patients and mutations causing multidrug resistance Rocio Lopez-Alvarez, Claudia Badillo-Lopez, Jorge F Cerna-Cortes, Ivan Castillo-Ramirez, Sandra Rivera-Gutierrez, Addy C Helguera-Repetto, Diana Aguilar, Rogelio Hernandez-Pando, Sofia Samper, and Jorge A Gonzalez-y-Merchand PMCID: PMC2848023 Invasion of Ureaplasma diversum in Hep-2 cells Lucas Miranda Marques, Priscilla M Ueno, Melissa Buzinhani, Beatriz A Cortez, Renata L Neto, Maurício Yamaguti, Rosângela C Oliveira, Ana Márcia S Guimarães, Telma A Monezi, Antonio Carlos R Braga, Jr, Gláucia M Machado-Santelli, and Jorge Timenetsky PMCID: PMC2907839 Examination of equine glandular stomach lesions for bacteria, including Helicobacter spp by fluorescence in situ hybridisation Louise Husted, Tim K Jensen, Susanne N Olsen, and Lars Mølbak PMCID: PMC2848230 Environmental distribution of prokaryotic taxa Javier Tamames, Juan José Abellán, Miguel Pignatelli, Antonio Camacho, and Andrés Moya PMCID: PMC2850351 Characterization of 13 multi-drug resistant Salmonella serovars from different broiler chickens associated with those of human isolates Lan-Ho Chiu, Cheng-Hsun Chiu, Yan-Ming Horn, Chien-Shun Chiou, Chien-Yu Lee, Chia-Ming Yeh, Chang-You Yu, Chean-Ping Wu, Chao-Chin Chang, and Chishih Chu PMCID: PMC2859872 Oligonucleotide microarray for the identification of potential mycotoxigenic fungi Sabine Lezar and Eugenia Barros PMCID: PMC2858739 Symbiotic functioning and bradyrhizobial biodiversity of cowpea (Vigna unguiculata L. Walp.) in Africa Flora Pule-Meulenberg, Alphonsus K Belane, Tatiana Krasova-Wade, and Felix D Dakora PMCID: PMC2858033 Study of the functionality of the Helicobacter pylori trans-translation components SmpB and SsrA in an heterologous system Marie Thibonnier, Sylvie Aubert, Chantal Ecobichon, and Hilde De Reuse PMCID: PMC2862035 Identification and characterization of the intracellular poly-3-hydroxybutyrate depolymerase enzyme PhaZ of Sinorhizobium meliloti Maria A Trainer, David Capstick, Alicja Zachertowska, Kathy N Lam, Scott RD Clark, and Trevor C Charles PMCID: PMC2867953 Variable-number tandem-repeat markers for typing Mycobacterium intracellulare strains isolated in humans Frédéric-Antoine Dauchy, Sébastien Dégrange, Alain Charron, Michel Dupon, Yi Xin, Cécile Bébéar, and Jeanne Maugein PMCID: PMC2861668 Bacterial diversity at different stages of the composting process Pasi Partanen, Jenni Hultman, Lars Paulin, Petri Auvinen, and Martin Romantschuk PMCID: PMC2907838 Evaluation of the hyplex® TBC PCR test for detection of Mycobacterium tuberculosis complex in clinical samples Sabine Hofmann-Thiel, Laziz Turaev, and Harald Hoffmann PMCID: PMC2853532 DNA microarray analysis of Salmonella serotype Typhimurium strains causing different symptoms of disease Eva Litrup, Mia Torpdahl, Burkhard Malorny, Stephan Huehn, Morten Helms, Henrik Christensen, and Eva M Nielsen PMCID: PMC2858740 Internalin profiling and multilocus sequence typing suggest four Listeria innocua subgroups with different evolutionary distances from Listeria monocytogenes Jianshun Chen, Qiaomiao Chen, Lingli Jiang, Changyong Cheng, Fan Bai, Jun Wang, Fan Mo, and Weihuan Fang PMCID: PMC2867954 Initial development and structure of biofilms on microbial fuel cell anodes Suzanne T Read, Paritam Dutta, Phillip L Bond, Jürg Keller, and Korneel Rabaey PMCID: PMC2858741 Surviving within the amoebal exocyst: the Mycobacterium avium complex paradigm Iskandar Ben Salah and Michel Drancourt PMCID: PMC2856558 Virulence-related Mycobacterium avium subsp hominissuis MAV_2928 gene is associated with vacuole remodeling in macrophages Samradhni S Jha, Lia Danelishvili, Dirk Wagner, Jörg Maser, Yong-jun Li, Ivana Moric, Steven Vogt, Yoshitaka Yamazaki, Barry Lai, and Luiz E Bermudez PMCID: PMC2882924 The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer Jongsik Chun, Kap Y Kim, Jae-Hak Lee, and Youngnim Choi PMCID: PMC2873484 Adhesion to and biofilm formation on IB3-1 bronchial cells by Stenotrophomonas maltophilia isolates from cystic fibrosis patients Arianna Pompilio, Valentina Crocetta, Pamela Confalone, Mauro Nicoletti, Andrea Petrucca, Simone Guarnieri, Ersilia Fiscarelli, Vincenzo Savini, Raffaele Piccolomini, and Giovanni Di Bonaventura PMCID: PMC2858031 Microarray studies on effects of Pneumocystis carinii infection on global gene expression in alveolar macrophages Bi-Hua Cheng, Yunlong Liu, Xiaoling Xuei, Chung-Ping Liao, Debao Lu, Mark E Lasbury, Pamela J Durant, and Chao-Hung Lee PMCID: PMC2858032 Functional dissection of translocon proteins of the Salmonella Pathogenicity Island 2-encoded type III secretion system Stefanie U Hölzer and Michael Hensel PMCID: PMC2873485 In vivo bioluminescence imaging and histopathopathologic analysis reveal distinct roles for resident and recruited immune effector cells in defense against invasive aspergillosis Oumaïma Ibrahim-Granet, Grégory Jouvion, Tobias M Hohl, Sabrina Droin-Bergère, François Philippart, Oh Yoen Kim, Minou Adib-Conquy, Reto Schwendener, Jean-Marc Cavaillon, and Matthias Brock PMCID: PMC2859869 The HP0256 gene product is involved in motility and cell envelope architecture of Helicobacter pylori François P Douillard, Kieran A Ryan, Michael C Lane, Delphine L Caly, Stanley A Moore, Charles W Penn, Jason Hinds, and Paul W O'Toole PMCID: PMC2864241 Brucella abortus ure2 region contains an acid-activated urea transporter and a nickel transport system Félix J Sangari, Ana M Cayón, Asunción Seoane, and Juan M García-Lobo PMCID: PMC2868824 Diverse modes of reproduction in the marine free-living ciliate Glauconema trihymene Hongan Long and Rebecca A Zufall PMCID: PMC2873486 Mycobacterium tuberculosis Rv0679c protein sequences involved in host-cell infection: Potential TB vaccine candidate antigen Diana P Cifuentes, Marisol Ocampo, Hernando Curtidor, Magnolia Vanegas, Martha Forero, Manuel E Patarroyo, and Manuel A Patarroyo PMCID: PMC2873487 The impact of ColRS two-component system and TtgABC efflux pump on phenol tolerance of Pseudomonas putida becomes evident only in growing bacteria Marta Putrinš, Heili Ilves, Liisa Lilje, Maia Kivisaar, and Rita Hõrak PMCID: PMC2865465 Biofilm formation and virulence expression by Streptococcus mutans are altered when grown in dual-species model Zezhang T Wen, David Yates, Sang-Joon Ahn, and Robert A Burne PMCID: PMC2867949 Hydrogen peroxide induced by the fungicide prothioconazole triggers deoxynivalenol (DON) production by Fusarium graminearum Kris Audenaert, Elien Callewaert, Monica Höfte, Sarah De Saeger, and Geert Haesaert PMCID: PMC2859870 Identification of a siderophore utilization locus in nontypeable Haemophilus influenzae Daniel J Morton, Elizabeth J Turman, Patrick D Hensley, Timothy M VanWagoner, Thomas W Seale, Paul W Whitby, and Terrence L Stull PMCID: PMC2859871 Real-time PCR expression profiling of genes encoding potential virulence factors in Candida albicans biofilms: identification of model-dependent and -independent gene expression Heleen Nailis, Soňa Kucharíková, Markéta Řičicová, Patrick Van Dijck, Dieter Deforce, Hans Nelis, and Tom Coenye PMCID: PMC2862034 Production of enterodiol from defatted flaxseeds through biotransformation by human intestinal bacteria Cheng-Zhi Wang, Xiao-Qing Ma, Dong-Hui Yang, Zhi-Rong Guo, Gui-Rong Liu, Ge-Xin Zhao, Jie Tang, Ya-Nan Zhang, Miao Ma, Shao-Qing Cai, Bao-Shan Ku, and Shu-Lin Liu PMCID: PMC2865466 High taxonomic level fingerprint of the human intestinal microbiota by Ligase Detection Reaction - Universal Array approach Marco Candela, Clarissa Consolandi, Marco Severgnini, Elena Biagi, Bianca Castiglioni, Beatrice Vitali, Gianluca De Bellis, and Patrizia Brigidi PMCID: PMC2873488 CEACAM1 recognition by bacterial pathogens is species-specific Maike Voges, Verena Bachmann, Robert Kammerer, Uri Gophna, and Christof R Hauck PMCID: PMC2871271 In vitro selection of resistance in Escherichia coli and Klebsiella spp. at in vivo fluoroquinolone concentrations Lorenzo Drago, Lucia Nicola, Roberto Mattina, and Elena De Vecchi PMCID: PMC2873490 Primary metabolism in Lactobacillus sakei food isolates by proteomic analysis Anette McLeod, Monique Zagorec, Marie-Christine Champomier-Vergès, Kristine Naterstad, and Lars Axelsson PMCID: PMC2873491 Cell wall proteome analysis of Mycobacterium smegmatis strain MC2 155 Zhiguo He and Jeroen De Buck PMCID: PMC2867950 The dissemination of C10 cysteine protease genes in Bacteroides fragilis by mobile genetic elements Roibeard F Thornton, Todd F Kagawa, Paul W O'Toole, and Jakki C Cooney PMCID: PMC2873492 Azithromycin effectiveness against intracellular infections of Francisella Saira Ahmad, Lyman Hunter, Aiping Qin, Barbara J Mann, and Monique L van Hoek PMCID: PMC2881020 Cell-associated hemolysis activity in the clinical strain of Pseudomonas fluorescens MFN1032 Daniel Sperandio, Gaelle Rossignol, Josette Guerillon, Nathalie Connil, Nicole Orange, Marc GJ Feuilloley, and Annabelle Merieau PMCID: PMC2871272 Pseudomonas aeruginosa inhibits in-vitro Candida biofilm development HMHN Bandara, JYY Yau, RM Watt, LJ Jin, and LP Samaranayake PMCID: PMC2874548 Propionibacterium acnes infection induces upregulation of inflammatory genes and cytokine secretion in prostate epithelial cells Johanna B Drott, Oleg Alexeyev, Patrik Bergström, Fredrik Elgh, and Jan Olsson PMCID: PMC2867951 RNA interference modulates replication of dengue virus in Drosophila melanogaster cells Swati Mukherjee and Kathryn A Hanley PMCID: PMC2874549 Functional analysis of an intergenic non-coding sequence within mce1 operon of M.tuberculosis Monika Joon, Shipra Bhatia, Rashmi Pasricha, Mridula Bose, and Vani Brahmachari PMCID: PMC2867952 Chemical modulators of the innate immune response alter gypsy moth larval susceptibility to Bacillus thuringiensis Nichole A Broderick, Kenneth F Raffa, and Jo Handelsman PMCID: PMC2873493 The RNA interference pathway affects midgut infection- and escape barriers for Sindbis virus in Aedes aegypti Cynthia CH Khoo, Joseph Piper, Irma Sanchez-Vargas, Ken E Olson, and Alexander WE Franz PMCID: PMC2877022 Isolation and Characterization of a Virulent Bacteriophage AB1 of Acinetobacter baumannii Hongjiang Yang, Li Liang, Shuxiang Lin, and Shiru Jia PMCID: PMC2874798 Definition of novel cell envelope associated proteins in Triton X-114 extracts of Mycobacterium tuberculosis H37Rv Hiwa Målen, Sharad Pathak, Tina Søfteland, Gustavo A de Souza, and Harald G Wiker PMCID: PMC2874799 Candida albicans SUR7 contributes to secretion, biofilm formation, and macrophage killing Stella M Bernardo and Samuel A Lee PMCID: PMC2887802 Species specificity, surface exposure, protein expression, immunogenicity, and participation in biofilm formation of Porphyromonas gingivalis HmuY Teresa Olczak, Halina Wójtowicz, Justyna Ciuraszkiewicz, and Mariusz Olczak PMCID: PMC2873494 The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors Shihui Yang, Dale A Pelletier, Tse-Yuan S Lu, and Steven D Brown PMCID: PMC2877685 The Leishmania amazonensis TRF (TTAGGG repeat-binding factor) homologue binds and co-localizes with telomeres Marcelo S da Silva, Arina M Perez, Rita de Cássia V da Silveira, Camila E de Moraes, Jair L Siqueira-Neto, Lucio H Freitas-Junior, and Maria Isabel N Cano PMCID: PMC2896790 Vibrio chromosomes share common history Benjamin C Kirkup, Jr, LeeAnn Chang, Sarah Chang, Dirk Gevers, and Martin F Polz PMCID: PMC2875227 Glutamate dehydrogenase and glutamine synthetase are regulated in response to nitrogen availability in Myocbacterium smegmatis Catriona J Harper, Don Hayward, Martin Kidd, Ian Wiid, and Paul van Helden PMCID: PMC2881912 Patterning of mutually interacting bacterial bodies: close contacts and airborne signals Jaroslav J Čepl, Irena Pátková, Anna Blahůšková, Fatima Cvrčková, and Anton Markoš PMCID: PMC2882925 N-acetylcysteine inhibit biofilms produced by Pseudomonas aeruginosa Tiemei Zhao and Youning Liu PMCID: PMC2882372 Photorhabdus adhesion modification protein (Pam) binds extracellular polysaccharide and alters bacterial attachment Robert T Jones, Maria Sanchez-Contreras, Isabella Vlisidou, Matthew R Amos, Guowei Yang, Xavier Muñoz-Berbel, Abhishek Upadhyay, Ursula J Potter, Susan A Joyce, Todd A Ciche, A Toby A Jenkins, Stefan Bagby, Richard H ffrench-Constant, and Nicholas R Waterfield PMCID: PMC2878306 Co-infection and localization of secondary symbionts in two whitefly species Marisa Skaljac, Katja Zanic, Smiljana Goreta Ban, Svetlana Kontsedalov, and Murad Ghanim PMCID: PMC2877686 Antibiotic susceptibility profiles of some Vibrio strains isolated from wastewater final effluents in a rural community of the Eastern Cape Province of South Africa Anthony I Okoh and Etinosa O Igbinosa PMCID: PMC2877687 NADase as a target molecule of in vivo suppression of the toxicity in the invasive M-1 group A Streptococcal isolates Ichiro Tatsuno, Masanori Isaka, Masaaki Minami, and Tadao Hasegawa PMCID: PMC2887803 Ultrastructure and molecular phylogenetic position of a novel euglenozoan with extrusive episymbiotic bacteria: Bihospites bacati n. gen. et sp. (Symbiontida) Susana A Breglia, Naoji Yubuki, Mona Hoppenrath, and Brian S Leander PMCID: PMC2881021 Phylogenetic analysis and molecular characteristics of seven variant Chinese field isolates of PRRSV Chengmin Wang, Bin Wu, Said Amer, Jing Luo, Hongmei Zhang, Yunhai Guo, Guoying Dong, Baohua Zhao, and Hongxuan He PMCID: PMC2889949 Acetic acid increases the phage-encoded enterotoxin A expression in Staphylococcus aureus Nina Wallin-Carlquist, Rong Cao, Dóra Márta, Ayla Sant'Ana da Silva, Jenny Schelin, and Peter Rådström PMCID: PMC2891721 Adenosine thiamine triphosphate accumulates in Escherichia coli cells in response to specific conditions of metabolic stress Tiziana Gigliobianco, Bernard Lakaye, Pierre Wins, Benaïssa El Moualij, Willy Zorzi, and Lucien Bettendorff PMCID: PMC2881022 Energy metabolism of Heliobacterium modesticaldum during phototrophic and chemotrophic growth Kuo-Hsiang Tang, Hai Yue, and Robert E Blankenship PMCID: PMC2887804 Characterization of Mycobacterium tuberculosis Beijing isolates from the Mediterranean area M Alonso, N Alonso Rodriguez, C Garzelli, M Martínez Lirola, M Herranz, S Samper, MJ Ruiz Serrano, E Bouza, and D García de Viedma PMCID: PMC2894025 Characterization of hemin-binding protein 35 (HBP35) in Porphyromonas gingivalis: its cellular distribution, thioredoxin activity and role in heme utilization Mikio Shoji, Yasuko Shibata, Teruaki Shiroza, Hideharu Yukitake, Benjamin Peng, Yu-Yen Chen, Keiko Sato, Mariko Naito, Yoshimitsu Abiko, Eric C Reynolds, and Koji Nakayama PMCID: PMC2907840 Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13 Muriel Gaillard, Nicolas Pradervand, Marco Minoia, Vladimir Sentchilo, David R Johnson, and Jan Roelof van der Meer PMCID: PMC2892462 Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae Bradd J Haley, Christopher J Grim, Nur A Hasan, Seon-Young Choi, Jongsik Chun, Thomas S Brettin, David C Bruce, Jean F Challacombe, J Chris Detter, Cliff S Han, Anwar Huq, and Rita R Colwell PMCID: PMC2889950 Prevalence of Borrelia burgdorferi sensu lato in rodents from Gansu, northwestern China Fang Zhang, Zhanwei Gong, Jijun Zhang, and Zengjia Liu PMCID: PMC2889951 Genetic relationships between clinical and non-clinical strains of Yersinia enterocolitica biovar 1A as revealed by multilocus enzyme electrophoresis and multilocus restriction typing Sarita Mallik and Jugsharan S Virdi PMCID: PMC2889952 Revealing fosfomycin primary effect on Staphylococcus aureus transcriptome: modulation of cell envelope biosynthesis and phosphoenolpyruvate induced starvation Marko Petek, Špela Baebler, Drago Kuzman, Ana Rotter, Zdravko Podlesek, Kristina Gruden, Maja Ravnikar, and Uroš Urleb PMCID: PMC2887449 Fibronectin-binding protein B variation in Staphylococcus aureus Fiona M Burke, Niamh McCormack, Simonetta Rindi, Pietro Speziale, and Timothy J Foster PMCID: PMC2894786 Escherichia coli phylogenetic group determination and its application in the identification of the major animal source of fecal contamination Camila Carlos, Mathias M Pires, Nancy C Stoppe, Elayse M Hachich, Maria IZ Sato, Tânia AT Gomes, Luiz A Amaral, and Laura MM Ottoboni PMCID: PMC2889953 Proteomic expression profiling of Haemophilus influenzae grown in pooled human sputum from adults with chronic obstructive pulmonary disease reveal antioxidant and stress responses Jun Qu, Alan J Lesse, Aimee L Brauer, Jin Cao, Steven R Gill, and Timothy F Murphy PMCID: PMC2887450 Immunization with a dominant-negative recombinant Herpes Simplex Virus (HSV) type 1 protects against HSV-2 genital disease in guinea pigs Richard Brans and Feng Yao PMCID: PMC2889954 Identification of a novel anti-σE factor in Neisseria meningitidis Carla Th P Hopman, Dave Speijer, Arie van der Ende, and Yvonne Pannekoek PMCID: PMC2893595 Transcellular transport of West Nile virus-like particles across human endothelial cells depends on residues 156 and 159 of envelope protein Rie Hasebe, Tadaki Suzuki, Yoshinori Makino, Manabu Igarashi, Satoko Yamanouchi, Akihiko Maeda, Motohiro Horiuchi, Hirofumi Sawa, and Takashi Kimura PMCID: PMC2889955 Mass spectrometry-based quantitative proteomic analysis of Salmonella enterica serovar Enteritidis protein expression upon exposure to hydrogen peroxide Kihoon Kim, Edward Yang, Gia-Phong Vu, Hao Gong, Jing Su, Fenyong Liu, and Sangwei Lu PMCID: PMC2897801 Brucella melitensis VjbR and C12-HSL regulons: contributions of the N-dodecanoyl homoserine lactone signaling molecule and LuxR homologue VjbR to gene expression Jenni N Weeks, Cristi L Galindo, Kenneth L Drake, Garry L Adams, Harold R Garner, and Thomas A Ficht PMCID: PMC2898763 Telonemia-specific environmental 18S rDNA PCR reveals unknown diversity and multiple marine-freshwater colonizations Jon Bråte, Dag Klaveness, Tellef Rygh, Kjetill S Jakobsen, and Kamran Shalchian-Tabrizi PMCID: PMC2891722 Quantitative transcription dynamic analysis reveals candidate genes and key regulators for ethanol tolerance in Saccharomyces cerevisiae Menggen Ma and Lewis Z Liu PMCID: PMC2903563 In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1 Mauricio Soto-Suárez, Diana Bernal, Carolina González, Boris Szurek, Romain Guyot, Joe Tohme, and Valérie Verdier PMCID: PMC2893596 Global transcriptional profiling of Burkholderia pseudomallei under salt stress reveals differential effects on the Bsa type III secretion system Pornpan Pumirat, Jon Cuccui, Richard A Stabler, Joanne M Stevens, Veerachat Muangsombut, Ekapot Singsuksawat, Mark P Stevens, Brendan W Wren, and Sunee Korbsrisate PMCID: PMC2896371 LPS-induced IL-8 activation in human intestinal epithelial cells is accompanied by specific histone H3 acetylation and methylation changes Tiziana Angrisano, Raffaela Pero, Silvia Peluso, Simona Keller, Silvana Sacchetti, Carmelo B Bruni, Lorenzo Chiariotti, and Francesca Lembo PMCID: PMC2893597 Phylogenetic and biogeographic implications inferred by mitochondrial intergenic region analyses and ITS1-5.8S-ITS2 of the entomopathogenic fungi Beauveria bassiana and B. brongniartii Dimitri V Ghikas, Vassili N Kouvelis, and Milton A Typas PMCID: PMC2896372 Molecular analysis of type 3 fimbrial genes from Escherichia coli, Klebsiella and Citrobacter species Cheryl-lynn Y Ong, Scott A Beatson, Makrina Totsika, Christiane Forestier, Alastair G McEwan, and Mark A Schembri PMCID: PMC2900259 Research Articles Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments Lance D Miller, Jennifer J Mosher, Amudhan Venkateswaran, Zamin K Yang, Anthony V Palumbo, Tommy J Phelps, Mircea Podar, Christopher W Schadt, and Martin Keller PMCID: PMC2906461 Genetic variation in Staphylococcus aureus surface and immune evasion genes is lineage associated: implications for vaccine design and host-pathogen interactions Alex J McCarthy and Jodi A Lindsay PMCID: PMC2905362 A distinctive 'microbial signature' in celiac pediatric patients Serena Schippa, Valerio Iebba, Maria Barbato, Giovanni Di Nardo, Valentina Totino, Monica Proietti Checchi, Catia Longhi, Giulia Maiella, Salvatore Cucchiara, and Maria Pia Conte PMCID: PMC2906462 The role of iron uptake in pathogenicity and symbiosis in Photorhabdus luminescens TT01 Robert J Watson, Peter Millichap, Susan A Joyce, Stuart Reynolds, and David J Clarke PMCID: PMC2905363 The proline-rich peptide Bac7(1-35) reduces mortality from Salmonella typhimurium in a mouse model of infection Monica Benincasa, Chiara Pelillo, Sonia Zorzet, Chiara Garrovo, Stefania Biffi, Renato Gennaro, and Marco Scocchi PMCID: PMC2896951 Role of type 1 and type 3 fimbriae in Klebsiella pneumoniae biofilm formation Casper Schroll, Kim B Barken, Karen A Krogfelt, and Carsten Struve PMCID: PMC2911432 Absence of functional TolC protein causes increased stress response gene expression in Sinorhizobium meliloti Mário R Santos, Ana M Cosme, Jörg D Becker, João MC Medeiros, Márcia F Mata, and Leonilde M Moreira PMCID: PMC2912261 Comparison of BCG, MPL and cationic liposome adjuvant systems in leishmanial antigen vaccine formulations against murine visceral leishmaniasis Rajesh Ravindran, Sudipta Bhowmick, Amrita Das, and Nahid Ali PMCID: PMC2904331 Isolation of deoxynivalenol-transforming bacteria from the chicken intestines using the approach of PCR-DGGE guided microbial selection Hai Yu, Ting Zhou, Jianhua Gong, Christopher Young, Xiaojun Su, Xiu-Zhen Li, Honghui Zhu, Rong Tsao, and Raymond Yang PMCID: PMC2912857 Gene encoding γ-carbonic anhydrase is cotranscribed with argC and induced in response to stationary phase and high CO2 in Azospirillum brasilense Sp7 Simarjot Kaur, Mukti N Mishra, and Anil K Tripathi PMCID: PMC2914000 Robustness analysis of culturing perturbations on Escherichia coli colony biofilm beta-lactam and aminoglycoside antibiotic tolerance Trevor R Zuroff, Hans Bernstein, Jenna Lloyd-Randolfi, Lourdes Jimenez-Taracido, Philip S Stewart, and Ross P Carlson PMCID: PMC2912858 Acanthamoeba produces disseminated infection in locusts and traverses the locust blood-brain barrier to invade the central nervous system Parisa N Mortazavi, Graham Goldsworthy, Ruth Kirk, and Naveed A Khan PMCID: PMC2908093 Rice bacterial blight pathogen Xanthomonas oryzae pv. oryzae produces multiple DSF-family signals in regulation of virulence factor production Ya-Wen He, Ji'en Wu, Jae-Soon Cha, and Lian-Hui Zhang PMCID: PMC2909994 A single sequence context cannot satisfy all non-AUG initiator codons in yeast† Chia-Pei Chang, Shun-Jia Chen, Chen-Huan Lin, Tzu-Ling Wang, and Chien-Chia Wang PMCID: PMC2909995 ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases Eva Bellemain, Tor Carlsen, Christian Brochmann, Eric Coissac, Pierre Taberlet, and Håvard Kauserud PMCID: PMC2909996 New adhesin functions of surface-exposed pneumococcal proteins Cécile Frolet, Meryam Beniazza, Laure Roux, Benoit Gallet, Marjolaine Noirclerc-Savoye, Thierry Vernet, and Anne Marie Di Guilmi PMCID: PMC2911433 Biosynthesis of compatible solutes in rhizobial strains isolated from Phaseolus vulgaris nodules in Tunisian fields Cristina Fernandez-Aunión, Thouraya Ben Hamouda, Fernando Iglesias-Guerra, Montserrat Argandoña, Mercedes Reina-Bueno, Joaquín J Nieto, M Elarbi Aouani, and Carmen Vargas PMCID: PMC2918589 Common origin of plasmid encoded alpha-hemolysin genes in Escherichia coli Ylanna Burgos and Lothar Beutin PMCID: PMC2918590 Inorganic pyrophosphatase in uncultivable hemotrophic mycoplasmas: identification and properties of the enzyme from Mycoplasma suis Katharina Hoelzle, Simone Peter, Michele Sidler, Manuela M Kramer, Max M Wittenbrink, Kathrin M Felder, and Ludwig E Hoelzle PMCID: PMC2916918 Molecular diversity of Mycobacterium tuberculosis isolates from patients with pulmonary tuberculosis in Mozambique Sofia O Viegas, Adelina Machado, Ramona Groenheit, Solomon Ghebremichael, Alexandra Pennhag, Paula S Gudo, Zaina Cuna, Paolo Miotto, Véronique Hill, Tatiana Marrufo, Daniela M Cirillo, Nalin Rastogi, Gunilla Källenius, and Tuija Koivula PMCID: PMC2914001 The T box regulatory element controlling expression of the class I lysyl-tRNA synthetase of Bacillus cereus strain 14579 is functional and can be partially induced by reduced charging of asparaginyl-tRNAAsn Niall Foy, Brian Jester, Gavin C Conant, and Kevin M Devine PMCID: PMC2916919 Development of stable reporter system cloning luxCDABE genes into chromosome of Salmonella enterica serotypes using Tn7 transposon Kevin Howe, Attila Karsi, Pierre Germon, Robert W Wills, Mark L Lawrence, and Richard H Bailey PMCID: PMC2918591 Chromosomal instability in Streptomyces avermitilis: major deletion in the central region and stable circularized chromosome Wei Chen, Fei He, Xiaojuan Zhang, Zhi Chen, Ying Wen, and Jilun Li PMCID: PMC2920896 Damage of Streptococcus mutans biofilms by carolacton, a secondary metabolite from the myxobacterium Sorangium cellulosum Brigitte Kunze, Michael Reck, Andreas Dötsch, André Lemme, Dietmar Schummer, Herbert Irschik, Heinrich Steinmetz, and Irene Wagner-Döbler PMCID: PMC2915981 Multilocus sequence types of Finnish bovine Campylobacter jejuni isolates and their attribution to human infections Caroline PA de Haan, Rauni I Kivistö, Marjaana Hakkinen, Jukka Corander, and Marja-Liisa Hänninen PMCID: PMC2914712 Mixed infections with Chlamydia and porcine epidemic diarrhea virus - a new in vitro model of chlamydial persistence Nicole Borel, Claudia Dumrese, Urs Ziegler, Andrea Schifferli, Carmen Kaiser, and Andreas Pospischil PMCID: PMC2919482 Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements Catherine M Ronning, Liliana Losada, Lauren Brinkac, Jason Inman, Ricky L Ulrich, Mark Schell, William C Nierman, and David DeShazer PMCID: PMC2920897 Genotypic and phenotypic properties of Candida parapsilosis sensu strictu strains isolated from different geographic regions and body sites Arianna Tavanti, Lambert AM Hensgens, Selene Mogavero, László Majoros, Sonia Senesi, and Mario Campa PMCID: PMC2919483 Ultraviolet stress delays chromosome replication in light/dark synchronized cells of the marine cyanobacterium Prochlorococcus marinus PCC9511 Christian Kolowrat, Frédéric Partensky, Daniella Mella-Flores, Gildas Le Corguillé, Christophe Boutte, Nicolas Blot, Morgane Ratin, Martial Ferréol, Xavier Lecomte, Priscillia Gourvil, Jean-François Lennon, David M Kehoe, and Laurence Garczarek PMCID: PMC2921402 Microbial oxidation of arsenite in a subarctic environment: diversity of arsenite oxidase genes and identification of a psychrotolerant arsenite oxidiser Thomas H Osborne, Heather E Jamieson, Karen A Hudson-Edwards, D Kirk Nordstrom, Stephen R Walker, Seamus A Ward, and Joanne M Santini PMCID: PMC2921403 Evidence for a bimodal distribution of Escherichia coli doubling times below a threshold initial cell concentration Peter L Irwin, Ly-Huong T Nguyen, George C Paoli, and Chin-Yi Chen PMCID: PMC2923132 Molecular diversity of Mycobacterium tuberculosis isolates from patients with tuberculosis in Honduras Senia Rosales, Lelany Pineda-García, Solomon Ghebremichael, Nalin Rastogi, and Sven E Hoffner PMCID: PMC2923133 In Helicobacter pylori auto-inducer-2, but not LuxS/MccAB catalysed reverse transsulphuration, regulates motility through modulation of flagellar gene transcription Feifei Shen, Laura Hobley, Neil Doherty, John T Loh, Timothy L Cover, R Elizabeth Sockett, Kim R Hardie, and John C Atherton PMCID: PMC2923134 Possible use of ail and foxA polymorphisms for detecting pathogenic Yersinia enterocolitica Ying Huang, Xin Wang, Zhigang Cui, Yuhuan Yang, Yuchun Xiao, Liuying Tang, Biao Kan, Jianguo Xu, and Huaiqi Jing PMCID: PMC2924855 Frequent associations between CTL and T-Helper epitopes in HIV-1 genomes and implications for multi-epitope vaccine designs Sinu Paul and Helen Piontkivska PMCID: PMC2924856 Multi-locus analysis of human infective Cryptosporidium species and subtypes using ten novel genetic loci Maha Bouzid, Kevin M Tyler, Richard Christen, Rachel M Chalmers, Kristin Elwin, and Paul R Hunter PMCID: PMC2928199 RNA Interference inhibits Hepatitis B Virus of different genotypes in Vitro and in Vivo Ya-Li Zhang, Tong Cheng, Yi-Jun Cai, Quan Yuan, Che Liu, Tao Zhang, De-Zhen Xia, Rui-Yin Li, Lian-Wei Yang, Ying-Bin Wang, Anthony ET Yeo, James Wai-Kuo Shih, Jun Zhang, and Ning-shao Xia PMCID: PMC2927532 Efflux pumps expression and its association with porin down-regulation and β-lactamase production among Pseudomonas aeruginosa causing bloodstream infections in Brazil Danilo E Xavier, Renata C Picão, Raquel Girardello, Lorena CC Fehlberg, and Ana C Gales PMCID: PMC2927533 Matrix metalloproteinase-3 promoter polymorphisms but not dupA-H. pylori correlate to duodenal ulcers in H. pylori-infected females Yi-Chun Yeh, Hsiu-Chi Cheng, Wei-Lun Chang, Hsiao-Bai Yang, and Bor-Shyang Sheu PMCID: PMC2928200 Methodology Articles PCR-based method for targeting 16S-23S rRNA intergenic spacer regions among Vibrio species Maria Hoffmann, Eric W Brown, Peter CH Feng, Christine E Keys, Markus Fischer, and Steven R Monday PMCID: PMC2856557 Natural transformation of Vibrio cholerae as a tool - Optimizing the procedure Rasmus L Marvig and Melanie Blokesch PMCID: PMC2890613 Development of a versatile tool for the simultaneous differential detection of Pseudomonas savastanoi pathovars by End Point and Real-Time PCR Stefania Tegli, Matteo Cerboneschi, Ilaria Marsili Libelli, and Elena Santilli PMCID: PMC2901321 Rapid and sensitive detection of Citrus Bacterial Canker by loop-mediated isothermal amplification combined with simple visual evaluation methods Luciano A Rigano, María R Marano, Atilio P Castagnaro, Alexandre Morais Do Amaral, and Adrian A Vojnov PMCID: PMC2895605 Establishment of a Cre/loxP recombination system for N-terminal epitope tagging of genes in Tetrahymena Clara Jana-Lui Busch, Alexander Vogt, and Kazufumi Mochizuki PMCID: PMC2912859 Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags Gary D Wu, James D Lewis, Christian Hoffmann, Ying-Yu Chen, Rob Knight, Kyle Bittinger, Jennifer Hwang, Jun Chen, Ronald Berkowsky, Lisa Nessel, Hongzhe Li, and Frederic D Bushman PMCID: PMC2921404 Scarless and sequential gene modification in Pseudomonas using PCR product flanked by short homology regions Rubing Liang and Jianhua Liu PMCID: PMC2924854 Other Issues: Journal List
|
previous
|
next
|
latest
|
archive
|
