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Volume 13;  2012

Software

UPDG: Utilities package for data analysis of Pooled DNA GWAS
Daniel WH Ho, Maurice KH Yap, Shea Ping Yip
BMC Genet. 2012; 13: 1. Published online 2012 January 17. doi: 10.1186/1471-2156-13-1
PMCID:
PMC3293712
Abstract Full Text PDF–377K Supplementary Material
ParentChecker: a computer program for automated inference of missing parental genotype calls and linkage phase correction
Zhiqiu Hu, Jeffrey D Ehlers, Philip A Roberts, Timothy J Close, Mitchell R Lucas, Steve Wanamaker, Shizhong Xu
BMC Genet. 2012; 13: 9. Published online 2012 February 23. doi: 10.1186/1471-2156-13-9
PMCID:
PMC3310824
Abstract Full Text PDF–231K
CpGPAP: CpG island predictor analysis platform
Li-Yeh Chuang, Cheng-Huei Yang, Ming-Cheng Lin, Cheng-Hong Yang
BMC Genet. 2012; 13: 13. Published online 2012 March 2. doi: 10.1186/1471-2156-13-13
PMCID:
PMC3313849
Abstract Full Text PDF–2.0M Supplementary Material
Enhancing the usability and performance of structured association mapping algorithms using automation, parallelization, and visualization in the GenAMap software system
Ross E Curtis, Anuj Goyal, Eric P Xing
BMC Genet. 2012; 13: 24. Published online 2012 April 3. doi: 10.1186/1471-2156-13-24
PMCID:
PMC3342145
Abstract Full Text PDF–1.6M
EggLib: processing, analysis and simulation tools for population genetics and genomics
Stéphane De Mita, Mathieu Siol
BMC Genet. 2012; 13: 27. Published online 2012 April 11. doi: 10.1186/1471-2156-13-27
PMCID:
PMC3350404
Abstract Full Text PDF–1.9M Supplementary Material

Research Articles

Sequencing genes in silico using single nucleotide polymorphisms
Xinyi Cindy Zhang, Bo Zhang, Shuying Sue Li, Xin Huang, John A Hansen, Lue Ping Zhao
BMC Genet. 2012; 13: 6. Published online 2012 January 30. doi: 10.1186/1471-2156-13-6
PMCID:
PMC3283449
Abstract Full Text PDF–380K Supplementary Material
Microsatellites reveal a strong subdivision of genetic structure in Chinese populations of the mite Tetranychus urticae Koch (Acari: Tetranychidae)
Jing-Tao Sun, Chunlan Lian, Maria Navajas, Xiao-Yue Hong
BMC Genet. 2012; 13: 8. Published online 2012 February 21. doi: 10.1186/1471-2156-13-8
PMCID:
PMC3309930
Abstract Full Text PDF–5.1M Supplementary Material
Genomic scan of selective sweeps in thin and fat tail sheep breeds for identifying of candidate regions associated with fat deposition
Mohammad Hossein Moradi, Ardeshir Nejati-Javaremi, Mohammad Moradi-Shahrbabak, Ken G Dodds, John C McEwan
BMC Genet. 2012; 13: 10. Published online 2012 February 26. doi: 10.1186/1471-2156-13-10
PMCID:
PMC3351017
Abstract Full Text PDF–1.5M Supplementary Material
Late blight resistance gene from Solanum ruiz-ceballosii is located on potato chromosome X and linked to violet flower colour
Jadwiga Śliwka, Henryka Jakuczun, Marcin Chmielarz, Agnieszka Hara-Skrzypiec, Iga Tomczyńska, Andrzej Kilian, Ewa Zimnoch-Guzowska
BMC Genet. 2012; 13: 11. Published online 2012 February 27. doi: 10.1186/1471-2156-13-11
PMCID:
PMC3347998
Abstract Full Text PDF–715K Supplementary Material
Fine mapping of a linkage peak with integration of lipid traits identifies novel coronary artery disease genes on chromosome 5
Daniel K Nolan, Beth Sutton, Carol Haynes, Jessica Johnson, Jacqueline Sebek, Elaine Dowdy, David Crosslin, David Crossman, Michael H Sketch, Jr, Christopher B Granger, David Seo, Pascal Goldschmidt-Clermont, William E Kraus, Simon G Gregory, Elizabeth R Hauser, Svati H Shah
BMC Genet. 2012; 13: 12. Published online 2012 February 27. doi: 10.1186/1471-2156-13-12
PMCID:
PMC3309961
Abstract Full Text PDF–1.0M Supplementary Material
Assessment of the genetic diversity of the Tunisian citrus rootstock germplasm
Hager Snoussi, Marie-France Duval, Andres Garcia-Lor, Zina Belfalah, Yann Froelicher, Ange-Marie Risterucci, Xavier Perrier, Jean-Pierre Jacquemoud-Collet, Luis Navarro, Moncef Harrabi, Patrick Ollitrault
BMC Genet. 2012; 13: 16. Published online 2012 March 19. doi: 10.1186/1471-2156-13-16
PMCID:
PMC3323426
Abstract Full Text PDF–370K Supplementary Material
Molecular organization and chromosomal localization of 5S rDNA in Amazonian Engystomops (Anura, Leiuperidae)
Débora Silva Rodrigues, Miryan Rivera, Luciana Bolsoni Lourenço
BMC Genet. 2012; 13: 17. Published online 2012 March 20. doi: 10.1186/1471-2156-13-17
PMCID:
PMC3342222
Abstract Full Text PDF–3.6M
Molecular diversity, population structure, and linkage disequilibrium in a worldwide collection of tobacco (Nicotiana tabacum L.) germplasm
Agostino Fricano, Nicolas Bakaher, Marcello Del Corvo, Pietro Piffanelli, Paolo Donini, Alessandra Stella, Nikolai V Ivanov, Carlo Pozzi
BMC Genet. 2012; 13: 18. Published online 2012 March 21. doi: 10.1186/1471-2156-13-18
PMCID:
PMC3342901
Abstract Full Text PDF–1.6M Supplementary Material
Genetic mapping of complex traits by minimizing integrated square errors
Song Wu, Guifang Fu, Yunmei Chen, Zhong Wang, Rongling Wu
BMC Genet. 2012; 13: 20. Published online 2012 March 23. doi: 10.1186/1471-2156-13-20
PMCID:
PMC3353242
Abstract Full Text PDF–892K
Categorization of 77 dystrophin exons into 5 groups by a decision tree using indexes of splicing regulatory factors as decision markers
Rusdy Ghazali Malueka, Yutaka Takaoka, Mariko Yagi, Hiroyuki Awano, Tomoko Lee, Ery Kus Dwianingsih, Atsushi Nishida, Yasuhiro Takeshima, Masafumi Matsuo
BMC Genet. 2012; 13: 23. Published online 2012 March 31. doi: 10.1186/1471-2156-13-23
PMCID:
PMC3350383
Abstract Full Text PDF–741K
Association between GNRHR, LHR and IGF1 polymorphisms and timing of puberty in male Angus cattle
Juan P Lirón, Alberto J Prando, María E Fernández, María V Ripoli, Andrés Rogberg-Muñoz, Daniel E Goszczynski, Diego M Posik, Pilar Peral-García, Andrés Baldo, Guillermo Giovambattista
BMC Genet. 2012; 13: 26. Published online 2012 April 5. doi: 10.1186/1471-2156-13-26
PMCID:
PMC3344682
Abstract Full Text PDF–228K Supplementary Material
The distribution of a germline methylation marker suggests a regional mechanism of LINE-1 silencing by the piRNA-PIWI system
Martin I Sigurdsson, Albert V Smith, Hans T Bjornsson, Jon J Jonsson
BMC Genet. 2012; 13: 31. Published online 2012 April 24. doi: 10.1186/1471-2156-13-31
PMCID:
PMC3352111
Abstract Full Text PDF–480K

Methodology Articles

Assessing the joint effect of population stratification and sample selection in studies of gene-gene (environment) interactions
KF Cheng, JY Lee
BMC Genet. 2012; 13: 5. Published online 2012 January 27. doi: 10.1186/1471-2156-13-5
PMCID:
PMC3280159
Abstract Full Text PDF–311K Supplementary Material
Weighted selective collapsing strategy for detecting rare and common variants in genetic association study
Yilin Dai, Renfang Jiang, Jianping Dong
BMC Genet. 2012; 13: 7. Published online 2012 February 6. doi: 10.1186/1471-2156-13-7
PMCID:
PMC3296579
Abstract Full Text PDF–388K

Corrections

Chromosome differentiation patterns during cichlid fish evolution
Andréia B Poletto, Irani A Ferreira, Diogo C Cabral-de-Mello, Rafael T Nakajima, Juliana Mazzuchelli, Heraldo B Ribeiro, Paulo C Venere, Mauro Nirchio, Thomas D Kocher, Cesar Martins
BMC Genet. 2012; 13: 2. Published online 2012 January 19. doi: 10.1186/1471-2156-13-2
Corrects:
BMC Genet. 2010; 11: 50.
PMCID:
PMC3282627
Correction PDF–191K Original Article
The B chromosome of the cichlid fish Haplochromis obliquidens harbors 18S rRNA genes
Andréia B Poletto, Irani A Ferreira, Cesar Martins
BMC Genet. 2012; 13: 3. Published online 2012 January 19. doi: 10.1186/1471-2156-13-3
Corrects:
BMC Genet. 2010; 11: 1.
PMCID:
PMC3282626
Correction PDF–150K Original Article
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