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Book Report Review of ”Bioinformatics for vaccinology“ edited by Darren R. Flower Dae-Won Kim and Hong-Seog Park PMCID: PMC2705361 Case Reports Detection and phylogenetic analysis of Orf virus from sheep in Brazil: a case report Jônatas S Abrahão, Rafael K Campos, Giliane S Trindade, Maria IM Guedes, Zélia IP Lobato, Carlos Mazur, Paulo CP Ferreira, Cláudio A Bonjardim, and Erna G Kroon PMCID: PMC2685785 Challenging complications of treatment – human herpes virus 6 encephalitis and pneumonitis in a patient undergoing autologous stem cell transplantation for relapsed Hodgkin's disease: a case report Martin Bommer, Sandra Pauls, and Jochen Greiner PMCID: PMC2718875 Phylogenetic analysis and characterization of Korean orf virus from dairy goats: case report Jae-Ku Oem, In-Soon Roh, Kyung-Hyun Lee, Kyoung-Ki Lee, Hye-Ryoung Kim, Young-Hwa Jean, and O-Soo Lee PMCID: PMC2770494 Commentaries Towards a sane and rational approach to management of Influenza H1N1 2009 William R Gallaher PMCID: PMC2691743 On the epidemiology of influenza: reply to Radonovich et al John J Cannell, Michael Zasloff, Cedric F Garland, Robert Scragg, and Edward Giovannucci PMCID: PMC2729747 Methodology Development of real time PCR for detection and quantitation of Dengue Viruses KR Gurukumar, D Priyadarshini, JA Patil, A Bhagat, A Singh, PS Shah, and D Cecilia PMCID: PMC2651855 A simplified in vitro ligation approach to clone an E1B55k-deleted double-targeted conditionally-replicative adenovirus Yosef S Haviv PMCID: PMC2647529 Analysis of adenoviral attachment to human platelets Nilly Shimony, Gregory Elkin, Dror Kolodkin-Gal, Lina Krasny, Simcha Urieli-Shoval, and Yosef S Haviv PMCID: PMC2649059 Highly quantitative serological detection of anti-cytomegalovirus (CMV) antibodies Peter D Burbelo, Alexandra T Issa, Kathryn H Ching, Maurice Exner, W Lawrence Drew, Harvey J Alter, and Michael J Iadarola PMCID: PMC2683803 Development and Validation of a HPV-32 Specific PCR Assay Nicholas R Herrel, Nadia L Johnson, Jennifer E Cameron, Janet Leigh, and Michael E Hagensee PMCID: PMC2715387 A catalytically and genetically optimized β-lactamase-matrix based assay for sensitive, specific, and higher throughput analysis of native henipavirus entry characteristics Mike C Wolf, Yao Wang, Alexander N Freiberg, Hector C Aguilar, Michael R Holbrook, and Benhur Lee PMCID: PMC2727953 Use of dried blood samples for monitoring hepatitis B virus infection Rosalia Lira, Angelica Maldonado-Rodriguez, Othon Rojas-Montes, Martha Ruiz-Tachiquin, Rocio Torres-Ibarra, Carlos Cano-Dominguez, Hilda Valdez-Salazar, Alejandro Gomez-Delgado, Onofre Muñoz, and Ma-Teresa Alvarez-Muñoz PMCID: PMC2761391 A rapid and efficient method for studies of virus interaction at the host cell surface using enteroviruses and real-time PCR Nina Jonsson, Maria Gullberg, Stina Israelsson, and A Michael Lindberg PMCID: PMC2797521 Molecular approaches to the analysis of deformed wing virus replication and pathogenesis in the honey bee, Apis mellifera Humberto F Boncristiani, Jr, Gennaro Di Prisco, Jeffery S Pettis, Michele Hamilton, and Yan Ping Chen PMCID: PMC2797523 Research Phylogenetic studies reveal existence of multiple lineages of a single genotype of DENV-1 (genotype III) in India during 1956–2007 Himani Kukreti, Paban Kumar Dash, Manmohan Parida, Artee Chaudhary, Parag Saxena, RS Rautela, Veena Mittal, Mala Chhabra, D Bhattacharya, Shiv Lal, PV Lakshmana Rao, and Arvind Rai PMCID: PMC2667167 An HPV 16 L1-based chimeric human papilloma virus-like particles containing a string of epitopes produced in plants is able to elicit humoral and cytotoxic T-cell activity in mice Georgina Paz De la Rosa, Alberto Monroy-García, María de Lourdes Mora-García, Cristina Gehibie Reynaga Peña, Jorge Hernández-Montes, Benny Weiss-Steider, and Miguel Angel Gómez Lim PMCID: PMC2639544 Production of recombinant AAV vectors encoding insulin-like growth factor I is enhanced by interaction among AAV rep regulatory sequences Shuiliang Shi, Scott A Mercer, Robert Dilley, and Stephen B Trippel PMCID: PMC2633264 Characterisation of immune responses and protective efficacy in mice after immunisation with Rift Valley Fever virus cDNA constructs Nina Lagerqvist, Jonas Näslund, Åke Lundkvist, Michèle Bouloy, Clas Ahlm, and Göran Bucht PMCID: PMC2637244 PreS1 epitope recognition in newborns after vaccination with the third-generation Sci-B-Vac™ vaccine and their relation to the antibody response to hepatitis B surface antigen Ulla B Hellström, Kazimierz Madalinski, and Staffan PE Sylvan PMCID: PMC2635352 Inhibition of lentivirus replication by aqueous extracts of Prunella vulgaris Melinda A Brindley, Mark P Widrlechner, Joe-Ann McCoy, Patricia Murphy, Cathy Hauck, Ludmila Rizshsky, Basil Nikolau, and Wendy Maury PMCID: PMC2645367 Analysis of a conserved RGE/RGD motif in HCV E2 in mediating entry Katharina B Rothwangl and Lijun Rong PMCID: PMC2637243 Consensus siRNA for inhibition of HCV genotype-4 replication Abdel Rahman N Zekri, Abeer A Bahnassy, Hanaa M Alam El-Din, and Hosny M Salama PMCID: PMC2661880 Immunohistochemistry for detection of avian infectious bronchitis virus strain M41 in the proventriculus and nervous system of experimentally infected chicken embryos Ahmed S Abdel-Moneim, Priscila Zlotowski, Jutta Veits, Günther M Keil, and Jens P Teifke PMCID: PMC2657138 Packaging of viral RNAs in virions of adenoviruses Li Xing and Suresh K Tikoo PMCID: PMC2647528 Production and purification of immunologically active core protein p24 from HIV-1 fused to ricin toxin B subunit in E. coli Alberto J Donayre-Torres, Ernesto Esquivel-Soto, María de Lourdes Gutiérrez-Xicoténcatl, Fernando R Esquivel-Guadarrama, and Miguel A Gómez-Lim PMCID: PMC2653483 Expression and characterization of the UL31 protein from duck enteritis virus Wei Xie, Anchun Cheng, Mingshu Wang, Hua Chang, Dekang Zhu, Qihui Luo, Renyong Jia, and Xiaoyue Chen PMCID: PMC2661054 Gene expression in primate liver during viral hemorrhagic fever Mahmoud Djavani, Oswald R Crasta, Yan Zhang, Juan Carlos Zapata, Bruno Sobral, Melissa G Lechner, Joseph Bryant, Harry Davis, and Maria S Salvato PMCID: PMC2657139 Prevalence of HBV and HCV among blood donors in Kosovo Hajrullah Fejza and Skender Telaku PMCID: PMC2649057 Deletions of neuraminidase and resistance to oseltamivir may be a consequence of restricted receptor specificity in recent H3N2 influenza viruses Shelly Gulati, David F Smith, and Gillian M Air PMCID: PMC2649058 Intrinsic disorder in Viral Proteins Genome-Linked: experimental and predictive analyses Eugénie Hébrard, Yannick Bessin, Thierry Michon, Sonia Longhi, Vladimir N Uversky, François Delalande, Alain Van Dorsselaer, Pedro Romero, Jocelyne Walter, Nathalie Declerk, and Denis Fargette PMCID: PMC2649914 A unique influenza A (H5N1) virus causing a focal poultry outbreak in 2007 in Manipur, India Akhilesh C Mishra, Sarah S Cherian, Alok K Chakrabarti, Shailesh D Pawar, Santosh M Jadhav, Biswajoy Pal, Satish Raut, Santosh Koratkar, and Sadhana S Kode PMCID: PMC2654876 HIV-1 CRF 02 AG polymerase genes in Southern Ghana are mosaics of different 02 AG strains and the protease gene cannot infer subtypes Kwamena W Sagoe, Magda Dwidar, Theophilus K Adiku, and Max Q Arens PMCID: PMC2655287 Engineering the vaccinia virus L1 protein for increased neutralizing antibody response after DNA immunization Kaori Shinoda, Linda S Wyatt, Kari R Irvine, and Bernard Moss PMCID: PMC2654435 Epstein-Barr Nuclear Antigen 1 modulates replication of oriP-plasmids by impeding replication and transcription fork migration through the family of repeats Ashok Aiyar, Siddhesh Aras, Amber Washington, Gyanendra Singh, and Ronald B Luftig PMCID: PMC2654434 The C-terminal sequence of the large hepatitis delta antigen is variable but retains the ability to bind clathrin Yu-Cheng Wang, Chi-Ruei Huang, Mei Chao, and Szecheng J Lo PMCID: PMC2661055 Properties and use of novel replication-competent vectors based on Semliki Forest virus Kai Rausalu, Anna Iofik, Liane Ülper, Liis Karo-Astover, Valeria Lulla, and Andres Merits PMCID: PMC2669057 Pathogenesis of swine influenza virus (Thai isolates) in weanling pigs: an experimental trial Donruethai Sreta, Roongtham Kedkovid, Sophon Tuamsang, Pravina Kitikoon, and Roongroje Thanawongnuwech PMCID: PMC2678088 A highly divergent South African geminivirus species illuminates the ancient evolutionary history of this family Arvind Varsani, Dionne N Shepherd, Kyle Dent, Aderito L Monjane, Edward P Rybicki, and Darren P Martin PMCID: PMC2666655 Avian influenza virus (H5N1); effects of physico-chemical factors on its survival Muhammad Akbar Shahid, Muhammad Abubakar, Sajid Hameed, and Shamsul Hassan PMCID: PMC2670273 Analysis of hemagglutinin-mediated entry tropism of H5N1 avian influenza Ying Guo, Emily Rumschlag-Booms, Jizhen Wang, Haixia Xiao, Jia Yu, Jianwei Wang, Li Guo, George F Gao, Youjia Cao, Michael Caffrey, and Lijun Rong PMCID: PMC2679739 Incorporation of membrane-bound, mammalian-derived immunomodulatory proteins into influenza whole virus vaccines boosts immunogenicity and protection against lethal challenge Andrew S Herbert, Lynn Heffron, Roy Sundick, and Paul C Roberts PMCID: PMC2679740 Vaccinia virus p37 interacts with host proteins associated with LE-derived transport vesicle biogenesis Yali Chen, Kady M Honeychurch, Guang Yang, Chelsea M Byrd, Chris Harver, Dennis E Hruby, and Robert Jordan PMCID: PMC2685784 Ethnic and geographical differences in HLA associations with the outcome of hepatitis C virus infection Jane H Wang, Xin Zheng, Xiaogang Ke, M Tevfik Dorak, Jingjing Shen, Basmattee Boodram, Maurice O'Gorman, Kenneth Beaman, Scott J Cotler, Ronald Hershow, and Lijun Rong PMCID: PMC2679741 Presence of necrotic strains of Potato virus Y in Mexican potatoes Victoriano Roberto Ramírez-Rodríguez, Katia Aviña-Padilla, Gustavo Frías-Treviño, Laura Silva-Rosales, and Juan Pablo Martínez-Soriano PMCID: PMC2704195 In vitro host range, multiplication and virion forms of recombinant viruses obtained from co-infection in vitro with a vaccinia-vectored influenza vaccine and a naturally occurring cowpox virus isolate Malachy Ifeanyi Okeke, Øivind Nilssen, Ugo Moens, Morten Tryland, and Terje Traavik PMCID: PMC2690591 A role for the JAK-STAT1 pathway in blocking replication of HSV-1 in dendritic cells and macrophages Kevin R Mott, David UnderHill, Steven L Wechsler, Terrence Town, and Homayon Ghiasi PMCID: PMC2686698 Expression of Human CD4 and chemokine receptors in cotton rat cells confers permissiveness for productive HIV infection Jorge CG Blanco, Lioubov M Pletneva, Lindsay Wieczorek, Dimple Khetawat, Tzanko S Stantchev, Christopher C Broder, Victoria R Polonis, and Gregory A Prince PMCID: PMC2689193 Detection of hepatitis E virus in wild boars of rural and urban regions in Germany and whole genome characterization of an endemic strain Anika Schielke, Katja Sachs, Michael Lierz, Bernd Appel, Andreas Jansen, and Reimar Johne PMCID: PMC2689194 The interaction between the measles virus nucleoprotein and the Interferon Regulator Factor 3 relies on a specific cellular environment Matteo Colombo, Jean-Marie Bourhis, Celia Chamontin, Carine Soriano, Stéphanie Villet, Stéphanie Costanzo, Marie Couturier, Valérie Belle, André Fournel, Hervé Darbon, Denis Gerlier, and Sonia Longhi PMCID: PMC2686699 Transduction of rat pancreatic islets with pseudotyped adeno-associated virus vectors Anthony T Craig, Oksana Gavrilova, Nancy K Dwyer, William Jou, Stephanie Pack, Eric Liu, Klaus Pechhold, Michael Schmidt, Victor J McAlister, John A Chiorini, E Joan Blanchette-Mackie, David M Harlan, and Roland A Owens PMCID: PMC2687429 Hepatitis C virus NS4B carboxy terminal domain is a membrane binding domain Jolanda MP Liefhebber, Bernd W Brandt, Rene Broer, Willy JM Spaan, and Hans C van Leeuwen PMCID: PMC2698844 Biochemical typing of pathological prion protein in aging cattle with BSE Seraina Tester, Valerie Juillerat, Marcus G Doherr, Bianca Haase, Miroslaw Polak, Felix Ehrensperger, Tosso Leeb, Andreas Zurbriggen, and Torsten Seuberlich PMCID: PMC2693104 Properties of virion transactivator proteins encoded by primate cytomegaloviruses Iain P Nicholson, Jane S Sutherland, Tanya N Chaudry, Earl L Blewett, Peter A Barry, Mary Jane Nicholl, and Chris M Preston PMCID: PMC2693105 Conserved peptides within the E2 region of Hepatitis C virus induce humoral and cellular responses in goats Mostafa K El-Awady, Ashraf A Tabll, Yasmine S El-Abd, Hassan Yousif, Mohsen Hegab, Mohamed Reda, Reem El Shenawy, Rehab I Moustafa, Nabila Degheidy, and Noha G Bader El Din PMCID: PMC2694788 Evolution of the M gene of the influenza A virus in different host species: large-scale sequence analysis Yuki Furuse, Akira Suzuki, Taro Kamigaki, and Hitoshi Oshitani PMCID: PMC2694789 The directionality of the nuclear transport of the influenza A genome is driven by selective exposure of nuclear localization sequences on nucleoprotein Winco WH Wu and Nelly Panté PMCID: PMC2694790 Protein intrinsic disorder and influenza virulence: the 1918 H1N1 and H5N1 viruses Gerard Kian-Meng Goh, A Keith Dunker, and Vladimir N Uversky PMCID: PMC2701943 Enhanced anti-HCV activity of interferon alpha 17 subtype Aurelie Dubois, Catherine François, Veronique Descamps, Carole Fournier, Czeslaw Wychowski, Jean Dubuisson, Sandrine Castelain, and Gilles Duverlie PMCID: PMC2697159 Development of TaqMan® MGB fluorescent real-time PCR assay for the detection of anatid herpesvirus 1 Yufei Guo, Anchun Cheng, Mingshu Wang, Chanjuan Shen, Renyong Jia, Shun Chen, and Na Zhang PMCID: PMC2696427 Hepatitis B and C in dialysis units in Kosova Skender Telaku, Hajrullah Fejza, Ymer Elezi, and Teuta Bicaj PMCID: PMC2694791 Effective suppression of Dengue fever virus in mosquito cell cultures using retroviral transduction of hammerhead ribozymes targeting the viral genome Pruksa Nawtaisong, James Keith, Tresa Fraser, Velmurugan Balaraman, Andrey Kolokoltsov, Robert A Davey, Stephen Higgs, Ahmed Mohammed, Yupha Rongsriyam, Narumon Komalamisra, and Malcolm J Fraser, Jr PMCID: PMC2704196 Identification and characterisation of a novel anti-viral peptide against avian influenza virus H9N2 Mohamed Rajik, Fatemeh Jahanshiri, Abdul Rahman Omar, Aini Ideris, Sharifah Syed Hassan, and Khatijah Yusoff PMCID: PMC2700090 Expression of Ebolavirus glycoprotein on the target cells enhances viral entry Balaji Manicassamy and Lijun Rong PMCID: PMC2699336 Near full-length genome analysis of low prevalent human immunodeficiency virus type 1 subclade F1 in São Paulo, Brazil Sabri Saeed Sanabani, Évelyn Regina de Souza Pastena, Walter Kleine Neto, Claudia C Barreto, Kelly T Ferrari, Erika MN Kalmar, Suzete Ferreira, and Ester Cerdeira Sabino PMCID: PMC2704198 Studies on membrane topology, N-glycosylation and functionality of SARS-CoV membrane protein Daniel Voß, Susanne Pfefferle, Christian Drosten, Lea Stevermann, Elisabetta Traggiai, Antonio Lanzavecchia, and Stephan Becker PMCID: PMC2705359 Antigenic presentation of heterologous epitopes engineered into the outer surface-exposed helix 4 loop region of human papillomavirus L1 capsomeres Yoshihiko Murata, Paula M Lightfoote, Robert C Rose, and Edward E Walsh PMCID: PMC2702290 The complete genome of klassevirus – a novel picornavirus in pediatric stool Alexander L Greninger, Charles Runckel, Charles Y Chiu, Thomas Haggerty, Julie Parsonnet, Donald Ganem, and Joseph L DeRisi PMCID: PMC2709156 Perinatal transmission of human papilomavirus DNA Renato L Rombaldi, Eduardo P Serafini, Jovana Mandelli, Edineia Zimmermann, and Kamille P Losquiavo PMCID: PMC2717078 Hepatitis C virus core, NS3, NS4B and NS5A are the major immunogenic proteins in humoral immunity in chronic HCV infection Maarit Sillanpää, Krister Melén, Päivi Porkka, Riku Fagerlund, Kaisu Nevalainen, Maija Lappalainen, and Ilkka Julkunen PMCID: PMC2709157 Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread Lori R Holtz, Stacy R Finkbeiner, Guoyan Zhao, Carl D Kirkwood, Rosina Girones, James M Pipas, and David Wang PMCID: PMC2706813 Oral vaccination with a recombinant Salmonella vaccine vector provokes systemic HIV-1 subtype C Gag-specific CD4+ Th1 and Th2 cell immune responses in mice Nyasha Chin'ombe, William R Bourn, Anna-Lise Williamson, and Enid G Shephard PMCID: PMC2708135 Infectious salmon anaemia virus (ISAV) isolated from the ISA disease outbreaks in Chile diverged from ISAV isolates from Norway around 1996 and was disseminated around 2005, based on surface glycoprotein gene sequences Frederick SB Kibenge, Marcos G Godoy, Yingwei Wang, Molly JT Kibenge, Valentina Gherardelli, Soledad Mansilla, Angelica Lisperger, Miguel Jarpa, Geraldine Larroquete, Fernando Avendaño, Marcela Lara, and Alicia Gallardo PMCID: PMC2710322 Respiratory viral infections detected by multiplex PCR among pediatric patients with lower respiratory tract infections seen at an urban hospital in Delhi from 2005 to 2007 Preeti Bharaj, Wayne M Sullender, Sushil K Kabra, Kalaivani Mani, John Cherian, Vikas Tyagi, Harendra S Chahar, Samander Kaushik, Lalit Dar, and Shobha Broor PMCID: PMC2709894 Analysis of host- and strain-dependent cell death responses during infectious salmon anemia virus infection in vitro Berit L Schiøtz, Espen S Bækkevold, Lene C Poulsen, Siri Mjaaland, and Tor Gjøen PMCID: PMC2715388 Characterization of subcellular localization of duck enteritis virus UL51 protein Chanjuan Shen, Yufei Guo, Anchun Cheng, Mingshu Wang, Yi Zhou, Dan Lin, Hongyi Xin, and Na Zhang PMCID: PMC2714536 Pathological studies on postvaccinal reactions of Rift Valley fever in goats Samia Ahmed Kamal PMCID: PMC2715389 A novel virus that infecting hypovirulent strain XG36-1 of plant fungal pathogen Sclerotinia sclerotiorum Liyan Zhang, Yanping Fu, Jiatao Xie, Daohong Jiang, Guoqing Li, and Xianhong Yi PMCID: PMC2714488 Occurrence of Hepatitis C Virus infection in type 2 diabetic patients attending Plateau state specialist hospital Jos Nigeria James A Ndako, Georgebest O Echeonwu, Nathaniel N Shidali, Iliyasu A Bichi, Grace A Paul, Ema Onovoh, and Lilian A Okeke PMCID: PMC2714490 Efficacy of consensus interferon in treatment of HbeAg-positive chronic hepatitis B: a multicentre, randomized controlled trial YongLi Zheng, LianSan Zhao, TaiXiang Wu, ShuHua Guo, YaGang Chen, and TaoYou Zhou PMCID: PMC2715390 Experimental induction of proventricular dilatation disease in cockatiels (Nymphicus hollandicus) inoculated with brain homogenates containing avian bornavirus 4 Ady Y Gancz, Amy L Kistler, Alexander L Greninger, Yigal Farnoushi, Sara Mechani, Shmuel Perl, Asaf Berkowitz, Noa Perez, Susan Clubb, Joseph L DeRisi, Don Ganem, and Avishai Lublin PMCID: PMC2717941 Identification of light-independent inhibition of human immunodeficiency virus-1 infection through bioguided fractionation of Hypericum perforatum Wendy Maury, Jason P Price, Melinda A Brindley, ChoonSeok Oh, Jeffrey D Neighbors, David F Wiemer, Nickolas Wills, Susan Carpenter, Cathy Hauck, Patricia Murphy, Mark P Widrlechner, Kathleen Delate, Ganesh Kumar, George A Kraus, Ludmila Rizshsky, and Basil Nikolau PMCID: PMC2716326 Temporal and geographic evidence for evolution of Sin Nombre virus using molecular analyses of viral RNA from Colorado, New Mexico and Montana William C Black, IV, Jeffrey B Doty, Mark T Hughes, Barry J Beaty, and Charles H Calisher PMCID: PMC2716327 Three-dimensional Huh7 cell culture system for the study of Hepatitis C virus infection Bruno Sainz, Jr, Veronica TenCate, and Susan L Uprichard PMCID: PMC2719612 Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts Gordon W Harkins, Wayne Delport, Siobain Duffy, Natasha Wood, Adérito L Monjane, Betty E Owor, Lara Donaldson, Salem Saumtally, Guy Triton, Rob W Briddon, Dionne N Shepherd, Edward P Rybicki, Darren P Martin, and Arvind Varsani PMCID: PMC2719613 Most common genotypes and risk factors for HCV in Gaza strip: a cross sectional study Basim M Ayesh, Sofia S Zourob, Salah Y Abu-Jadallah, and Yonat Shemer-Avni PMCID: PMC2716328 Diversification of West Nile virus in a subtropical region Daniel M Chisenhall and Christopher N Mores PMCID: PMC2720385 In vitro dynamics of HIV-1 BF intersubtype recombinants genomic regions involved in the regulation of gene expression Mauricio G Carobene, Christian Rodríguez Rodrígues, Cristian A De Candia, Gabriela Turk, and Horacio Salomón PMCID: PMC2717942 Hepatitis E virus infection is highly prevalent among pregnant women in Accra, Ghana Andrew A Adjei, Yao Tettey, John T Aviyase, Clement Adu-Gyamfi, Samuel Obed, Julius AA Mingle, Patrick F Ayeh-Kumi, and Theophilus K Adiku PMCID: PMC2717077 The role of NH4Cl and cysteine proteases in Human Papillomavirus type 16 infection Sarah A Dabydeen and Patricio I Meneses PMCID: PMC2718874 Hepatitis C Virus infection in apparentenly healthy individuals with family history of diabetes in Vom, Plateau State Nigeria Obinna O Nwankiti, James A Ndako, Georgebest ON Echeonwu, Atanda O Olabode, Chika I Nwosuh, Ema M Onovoh, Lilian A Okeke, Jumoke O Akinola, Boniface N Duru, Ijeoma O Nwagbo, Godwin O Agada, and Anthony A Chukwuedo PMCID: PMC2717943 Molecular epidemiology of sexually transmitted human papillomavirus in a self referred group of women in Ireland John F Menton, Suzanne M Cremin, Lydie Canier, Mary Horgan, and Liam J Fanning PMCID: PMC2724505 Genetic diversity of the E Protein of Dengue Type 3 Virus Alberto A Amarilla, Flavia T de Almeida, Daniel M Jorge, Helda L Alfonso, Luiza A de Castro-Jorge, Nadia A Nogueira, Luiz T Figueiredo, and Victor H Aquino PMCID: PMC2720943 9-aminoacridine Inhibition of HIV-1 Tat Dependent Transcription Irene Guendel, Lawrence Carpio, Rebecca Easley, Rachel Van Duyne, William Coley, Emmanuel Agbottah, Cynthia Dowd, Fatah Kashanchi, and Kylene Kehn-Hall PMCID: PMC2723079 Sequence diversity on four ORFs of citrus tristeza virus correlates with pathogenicity Lisset Herrera-Isidrón, Juan Carlos Ochoa-Sánchez, Rafael Rivera-Bustamante, and Juan Pablo Martínez-Soriano PMCID: PMC2731079 Improved Efficacy of a Gene Optimised Adenovirus-based Vaccine for Venezuelan Equine Encephalitis Virus Amanda J Williams, Lyn M O'Brien, Robert J Phillpotts, and Stuart D Perkins PMCID: PMC2732613 A rat model of picornavirus-induced airway infection and inflammation Louis A Rosenthal, Svetlana P Amineva, Renee J Szakaly, Robert F Lemanske, Jr, James E Gern, and Ronald L Sorkness PMCID: PMC2790594 Mechanisms of the action of povidone-iodine against human and avian influenza A viruses: its effects on hemagglutination and sialidase activities Nongluk Sriwilaijaroen, Prapon Wilairat, Hiroaki Hiramatsu, Tadanobu Takahashi, Takashi Suzuki, Morihiro Ito, Yasuhiko Ito, Masato Tashiro, and Yasuo Suzuki PMCID: PMC2739848 Development of a RVFV ELISA that can distinguish infected from vaccinated animals Anita K McElroy, César G Albariño, and Stuart T Nichol PMCID: PMC2733132 Partial direct contact transmission in ferrets of a mallard H7N3 influenza virus with typical avian-like receptor specificity Haichen Song, Hongquan Wan, Yonas Araya, and Daniel R Perez PMCID: PMC2743663 y Human herpesvirus 6 envelope components enriched in lipid rafts: evidence for virion-associated lipid rafts Akiko Kawabata, Huamin Tang, Honglan Huang, Koichi Yamanishi, and Yasuko Mori PMCID: PMC2743664 Hepatitis B virus genotypes/subgenotypes in voluntary blood donors in Makassar, South Sulawesi, Indonesia Andi Utama, Theresia I Octavia, Rama Dhenni, Upik A Miskad, Irawan Yusuf, and Susan Tai PMCID: PMC2732614 Nucleotide identity and variability among different Pakistani hepatitis C virus isolates Muhammad Idrees, Sadia Butt, Zunaira Awan, Mahwish Aftab, Bushra Khubaib, Irshad-ur Rehman, Madiha Akram, Sobia Manzoor, Haji Akbar, Shazia Rafiqe, and Sheikh Riazuddin PMCID: PMC2737312 Reverse genetic characterization of the natural genomic deletion in SARS-Coronavirus strain Frankfurt-1 open reading frame 7b reveals an attenuating function of the 7b protein in-vitro and in-vivo Susanne Pfefferle, Verena Krähling, Vanessa Ditt, Klaus Grywna, Elke Mühlberger, and Christian Drosten PMCID: PMC2739521 Discovery of common marburgvirus protective epitopes in a BALB/c mouse model Warren V Kalina, Kelly L Warfield, Gene G Olinger, and Sina Bavari PMCID: PMC2746211 Does the viral subtype influence the biennial cycle of respiratory syncytial virus? Gordana Mlinaric-Galinovic, Gordana Vojnovic, Jasna Cepin-Bogovic, Ana Bace, Jadranka Bozikov, Robert C Welliver, Ulrich Wahn, and Ljiljana Cebalo PMCID: PMC2742548 Torque Teno Virus (TTV) distribution in healthy Russian population Evgeny V Vasilyev, Dmitry Y Trofimov, Alexander G Tonevitsky, Valery V Ilinsky, Dmitriy O Korostin, and Denis V Rebrikov PMCID: PMC2745379 Measles Resurgence Associated with Continued Circulation of Genotype H1 Viruses in China, 2005 Yixin Ji, Yan Zhang, Songtao Xu, Zhen Zhu, Shuyan Zuo, Xiaohong Jiang, Peishan Lu, Changyin Wang, Yong Liang, Huanying Zheng, Yang Liu, Naiying Mao, Xiaofeng Liang, David Alexander Featherstone, Paul A Rota, William J Bellini, and Wenbo Xu PMCID: PMC2759936 Panorama phylogenetic diversity and distribution of type A influenza viruses based on their six internal gene sequences Ji-Ming Chen, Ying-Xue Sun, Ji-Wang Chen, Shuo Liu, Jian-Min Yu, Chao-Jian Shen, Xiang-Dong Sun, and Dong Peng PMCID: PMC2746212 Genetic diversity and evolution of human metapneumovirus fusion protein over twenty years Chin-Fen Yang, Chiaoyin K Wang, Sharon J Tollefson, Rohith Piyaratna, Linda D Lintao, Marla Chu, Alexis Liem, Mary Mark, Richard R Spaete, James E Crowe, Jr, and John V Williams PMCID: PMC2753315 Cysteine protease activation and apoptosis in Murine norovirus infection Linnzi M Furman, Walid S Maaty, Lena K Petersen, Khalil Ettayebi, Michele E Hardy, and Brian Bothner PMCID: PMC2753316 Nested-multiplex PCR detection of Orthopoxvirus and Parapoxvirus directly from exanthematic clinical samples Jônatas S Abrahão, Larissa S Lima, Felipe L Assis, Pedro A Alves, André T Silva-Fernandes, Marcela MG Cota, Vanessa M Ferreira, Rafael K Campos, Carlos Mazur, Zélia IP Lobato, Giliane S Trindade, and Erna G Kroon PMCID: PMC2749831 Sialylated glycans as receptor and inhibitor of enterovirus 71 infection to DLD-1 intestinal cells Betsy Yang, Hau Chuang, and Kuender D Yang PMCID: PMC2751754 Development of a fluorescent quantitative real-time polymerase chain reaction assay for the detection of Goose parvovirus in vivo Jin-Long Yang, An-Chun Cheng, Ming-Shu Wang, Kang-Cheng Pan, Min Li, Yu-Fei Guo, Chuan-Feng Li, De-Kang Zhu, and Xiao-Yue Chen PMCID: PMC2751755 Comparative analysis of complete nucleotide sequence of porcine reproductive and respiratory syndrome virus (PRRSV) isolates in Thailand (US and EU genotypes) Alongkorn Amonsin, Roongtham Kedkovid, Suphasawatt Puranaveja, Piya Wongyanin, Sanipa Suradhat, and Roongroje Thanawongnuwech PMCID: PMC2753317 A potentially novel overlapping gene in the genomes of Israeli acute paralysis virus and its relatives Niv Sabath, Nicholas Price, and Dan Graur PMCID: PMC2754452 Proteomics computational analyses suggest that the bornavirus glycoprotein is a class III viral fusion protein (γ penetrene) Courtney E Garry and Robert F Garry PMCID: PMC2753318 Seroprevalence of Hepatitis B virus and Hepatitis C virus among blood donors in Nyala, South Dar Fur, Sudan Mustafa Abdalla Ali Abou, Yassir Mohammed Eltahir, and Abdelwahid Saeed Ali PMCID: PMC2759937 Characterization of the Lassa virus GP1 ectodomain shedding: implications for improved diagnostic platforms Luis M Branco and Robert F Garry PMCID: PMC2759938 A HIV-1 heterosexual transmission chain in Guangzhou, China: a molecular epidemiological study Zhigang Han, Tommy WC Leung, Jinkou Zhao, Ming Wang, Lirui Fan, Kai Li, Xinli Pang, Zhenbo Liang, Wilina WL Lim, and Huifang Xu PMCID: PMC2761389 Environmental surveillance of non-polio enteroviruses in Iran Mohammad Kargar, Sara Sadeghipour, and Rakhshandeh Nategh PMCID: PMC2761390 Characterisation of a GII-4 norovirus variant-specific surface-exposed site involved in antibody binding David J Allen, Rob Noad, Dhan Samuel, Jim J Gray, Polly Roy, and Miren Iturriza-Gómara PMCID: PMC2762976 Induction of cell-cell fusion by ectromelia virus is not inhibited by its fusion inhibitory complex Noam Erez, Nir Paran, Galia Maik-Rachline, Boaz Politi, Tomer Israely, Paula Schnider, Pinhas Fuchs, Sharon Melamed, and Shlomo Lustig PMCID: PMC2760862 A geminiviral amplicon (VA) derived from Tomato leaf curl virus (ToLCV) can replicate in a wide variety of plant species and also acts as a VIGS vector Prerna Pandey, Nirupam R Choudhury, and Sunil K Mukherjee PMCID: PMC2761890 Identification of novel host-oriented targets for Human Immunodeficiency Virus type 1 using Random Homozygous Gene Perturbation Hanwen Mao, Hanson Chen, Zena Fesseha, Shaojing Chang, Huong Ung-Medoff, Jessica Van Dyke, Manu Kohli, Wu-Bo Li, Michael Goldblatt, and Michael S Kinch PMCID: PMC2760863 Multipathogen infections in hospitalized children with acute respiratory infections Dan Peng, Dongchi Zhao, Jingtao Liu, Xia Wang, Kun Yang, Hong Xicheng, Yang Li, and Fubing Wang PMCID: PMC2762469 Stable replication of the EBNA1/OriP-mediated baculovirus vector and its application to anti-HCV gene therapy Hitoshi Suzuki, Norihiko Matsumoto, Tomoyuki Suzuki, Myint OO Chang, and Hiroshi Takaku PMCID: PMC2764697 The Asia 2 specific signal peptide region and other domains in fusion protein genes characterized Asia 1 and Asia 2 canine distemper viruses Serageldeen Sultan, Nataya Charoenvisal, Nguyen Thi Lan, Ryoji Yamaguchi, Ken Maeda, and Kazushige Kai PMCID: PMC2764698 Detection of NP, N3 and N7 antibodies to avian influenza virus by indirect ELISA using yeast-expressed antigens Chitra Upadhyay, Arun Ammayappan, and Vikram N Vakharia PMCID: PMC2763870 Influence of the RNase H domain of retroviral reverse transcriptases on the metal specificity and substrate selection of their polymerase domains Tanaji T Talele, Alok Upadhyay, and Virendra N Pandey PMCID: PMC2765437 Polymorphism of viral dsRNA in Xanthophyllomyces dendrorhous strains isolated from different geographic areas Marcelo Baeza, Mario Sanhueza, Oriana Flores, Vicente Oviedo, Diego Libkind, and Víctor Cifuentes PMCID: PMC2764699 Pichinde virus induces microvascular endothelial cell permeability through the production of nitric oxide Rebecca L Brocato and Thomas G Voss PMCID: PMC2765958 Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission Nobubelo K Ngandu, Cathal Seoighe, and Konrad Scheffler PMCID: PMC2765438 Analysis of virion associated host proteins in vesicular stomatitis virus using a proteomics approach Megan Moerdyk-Schauwecker, Sun-Il Hwang, and Valery Z Grdzelishvili PMCID: PMC2770056 Herpes simplex virus type 2 tegument protein UL56 relocalizes ubiquitin ligase Nedd4 and has a role in transport and/or release of virions Yoko Ushijima, Fumi Goshima, Hiroshi Kimura, and Yukihiro Nishiyama PMCID: PMC2770495 The infective cycle of Cabbage leaf curl virus (CaLCuV) is affected by CRUMPLED LEAF (CRL) gene in Arabidopsis thaliana Diana L Trejo-Saavedra, Jean P Vielle-Calzada, and Rafael F Rivera-Bustamante PMCID: PMC2770057 Pathogenesis of aerosolized Eastern Equine Encephalitis virus infection in guinea pigs Chad J Roy, Douglas S Reed, Catherine L Wilhelmsen, Justin Hartings, Sarah Norris, and Keith E Steele PMCID: PMC2770496 Molecular characterization of the Great Lakes viral hemorrhagic septicemia virus (VHSV) isolate from USA Arun Ammayappan and Vikram N Vakharia PMCID: PMC2771013 The interaction of hepatitis A virus (HAV) with soluble forms of its cellular receptor 1 (HAVCR1) share the physiological requirements of infectivity in cell culture Erica Silberstein, Krishnamurthy Konduru, and Gerardo G Kaplan PMCID: PMC2775739 Age-dependent resistance to Porcine reproductive and respiratory syndrome virus replication in swine Kelly L Klinge, Eric M Vaughn, Michael B Roof, Elida M Bautista, and Michael P Murtaugh PMCID: PMC2773768 Comparative functional analysis of Jembrana disease virus Tat protein on lentivirus long terminal repeat promoters: evidence for flexibility at its N-terminus Yang Su, Gang Deng, Yuanming Gai, Yue Li, Yang Gao, Jiansen Du, Yunqi Geng, Qimin Chen, and Wentao Qiao PMCID: PMC2775740 Localization of deformed wing virus (DWV) in the brains of the honeybee, Apis mellifera Linnaeus Karan S Shah, Elizabeth C Evans, and Marie C Pizzorno PMCID: PMC2779808 Combined effects of hyperglycemic conditions and HIV-1 Nef: a potential model for induced HIV neuropathogenesis Edward A Acheampong, Cassandra Roschel, Muhammad Mukhtar, Alagarsamy Srinivasan, Mohammad Rafi, Roger J Pomerantz, and Zahida Parveen PMCID: PMC2778648 Cassette deletion in multiple shRNA lentiviral vectors for HIV-1 and its impact on treatment success Glen J Mcintyre, Yi-Hsin Yu, Anna Tran, Angel B Jaramillo, Allison J Arndt, Michelle L Millington, Maureen P Boyd, Fiona A Elliott, Sylvie W Shen, John M Murray, and Tanya L Applegate PMCID: PMC2775741 Bovine viral diarrhea virus NS4B protein is an integral membrane protein associated with Golgi markers and rearranged host membranes Erica Weiskircher, Jason Aligo, Gang Ning, and Kouacou V Konan PMCID: PMC2777160 Screening of specific diagnostic peptides of swine hepatitis E virus Kai Zhao, Qiwen Liu, Ruisong Yu, Zhen Li, Jianyue Li, Hong Zhu, Xiao Wu, Furong Tan, Jinbin Wang, and Xueming Tang PMCID: PMC2780410 Antiviral activity of gliotoxin, gentian violet and brilliant green against Nipah and Hendra virus in vitro Mohamad Aljofan, Michael L Sganga, Michael K Lo, Christina L Rootes, Matteo Porotto, Adam G Meyer, Simon Saubern, Anne Moscona, and Bruce A Mungall PMCID: PMC2781006 Inhibition of Monkeypox virus replication by RNA interference Abdulnaser Alkhalil, Sarah Strand, Eric Mucker, John W Huggins, Peter B Jahrling, and Sofi M Ibrahim PMCID: PMC2777875 Detection and quantification of pestivirus in experimentally infected pregnant ewes and their progeny Ana Hurtado, Isbene Sanchez, Felix Bastida, Esmeralda Minguijón, Ramón A Juste, and Ana L García-Pérez PMCID: PMC2777161 Characterization of low pathogenicity avian influenza viruses isolated from wild birds in Mongolia 2005 through 2007 Erica Spackman, David E Swayne, Martin Gilbert, Damien O Joly, William B Karesh, David L Suarez, Ruuragchaa Sodnomdarjaa, Purevtseren Dulam, and Carol Cardona PMCID: PMC2781007 Phylogenetic analysis of Newcastle disease viruses isolated from waterfowl in the Upper Midwest Region of the United States Naresh Jindal, Yogesh Chander, Ashok K Chockalingam, Martha de Abin, Patrick T Redig, and Sagar M Goyal PMCID: PMC2776597 Chimeric recombinant rotavirus-like particles as a vehicle for the display of heterologous epitopes Andrea Peralta, Paula Molinari, and Oscar Taboga PMCID: PMC2777876 Comparative analysis of Panicum streak virus and Maize streak virus diversity, recombination patterns and phylogeography Arvind Varsani, Aderito L Monjane, Lara Donaldson, Sunday Oluwafemi, Innocent Zinga, Ephrem K Komba, Didier Plakoutene, Noella Mandakombo, Joseph Mboukoulida, Silla Semballa, Rob W Briddon, Peter G Markham, Jean-Michel Lett, Pierre Lefeuvre, Edward P Rybicki, and Darren P Martin PMCID: PMC2777162 FSL-1, a bacterial-derived toll-like receptor 2/6 agonist, enhances resistance to experimental HSV-2 infection William A Rose, II, Chris L McGowin, and Richard B Pyles PMCID: PMC2780411 Enhanced detection and study of murine norovirus-1 using a more efficient microglial cell line Courtney Cox, Shengbo Cao, and Yuanan Lu PMCID: PMC2777878 Anti-viral properties and mode of action of standardized Echinacea purpurea extract against highly pathogenic avian Influenza virus (H5N1, H7N7) and swine-origin H1N1 (S-OIV) Stephan Pleschka, Michael Stein, Roland Schoop, and James B Hudson PMCID: PMC2785784 Evidence for a novel gene associated with human influenza A viruses Monica Clifford, James Twigg, and Chris Upton PMCID: PMC2780412 Hepatitis B virus genotypes and evolutionary profiles from blood donors from the northwest region of China Xing-bin Hu, Qiao-hong Yue, Xian-qing Zhang, Xue-qing Xu, Yin Wen, Yao-zhen Chen, Xiao-dong Cheng, Liu Yang, and Shi-jie Mu PMCID: PMC2781008 Replication and drug resistant mutation of HIV-1 subtype B' (Thailand B) variants isolated from HAART treatment individuals in China Jianping Sun, Liying Ma, Xiaoling Yu, Yang Huang, Lin Yuan, and Yiming Shao PMCID: PMC2795754 Survey of both hepatitis B virus (HBsAg) and hepatitis C virus (HCV-Ab) coinfection among HIV positive patients Mohsen Mohammadi, Gholamreza Talei, Ali Sheikhian, Farzad Ebrahimzade, Yadollah Pournia, Ehsan Ghasemi, and Hadis Boroun PMCID: PMC2785785 Evidence of recombination in Hepatitis C Virus populations infecting a hemophiliac patient Pilar Moreno, Macarena Alvarez, Lilia López, Gonzalo Moratorio, Didier Casane, Matías Castells, Silvia Castro, Juan Cristina, and Rodney Colina PMCID: PMC2784780 Hepatitis A virus (HAV) packaging size limit Krishnamurthy Konduru, Siham M Nakamura, and Gerardo G Kaplan PMCID: PMC2787512 The ORF59 DNA polymerase processivity factor homologs of Old World primate RV2 rhadinoviruses are highly conserved nuclear antigens expressed in differentiated epithelium in infected macaques A Gregory Bruce, Angela M Bakke, Courtney A Gravett, Laura K DeMaster, Helle Bielefeldt-Ohmann, Kellie L Burnside, and Timothy M Rose PMCID: PMC2785786 Development of a novel monoclonal antibody with reactivity to a wide range of Venezuelan equine encephalitis virus strains Lyn M O'Brien, Cindy D Underwood-Fowler, Sarah A Goodchild, Amanda L Phelps, and Robert J Phillpotts PMCID: PMC2783036 From where did the 2009 'swine-origin' influenza A virus (H1N1) emerge? Adrian J Gibbs, John S Armstrong, and Jean C Downie PMCID: PMC2787513 The role of mutations in core protein of hepatitis B virus in liver fibrosis Ashraf Mohamadkhani, Ferdous Rastgar Jazii, Hossein Poustchi, Omidreza Nouraein, Shahsanam Abbasi, Masoud Sotoudeh, and Ghodratollah Montazeri PMCID: PMC2800847 High genotypic diversity and a novel variant of human cytomegalovirus revealed by combined UL33/UL55 genotyping with broad-range PCR Merlin Deckers, Jörg Hofmann, Karl-Anton Kreuzer, Henrike Reinhard, Abigail Edubio, Hartmut Hengel, Sebastian Voigt, and Bernhard Ehlers PMCID: PMC2789067 The construction and characterization of the bi-directional promoter between pp38 gene and 1.8-kb mRNA transcripts of Marek's disease viruses Ruiai Chen, Jiabo Ding, and Bin Wang PMCID: PMC2791765 Amphipathic DNA polymers exhibit antiviral activity against systemic Murine Cytomegalovirus infection Rhonda D Cardin, Fernando J Bravo, Andrea P Sewell, James Cummins, Louis Flamand, Jean-Marc Juteau, David I Bernstein, and Andrew Vaillant PMCID: PMC2794273 Modeling gene sequences over time in 2009 H1N1 Influenza A Virus populations Natalia Goñi, Alvaro Fajardo, Gonzalo Moratorio, Rodney Colina, and Juan Cristina PMCID: PMC2794274 Molecular characterization and phylogenetic analysis of the complete genome of a porcine sapovirus from Chinese swine Shixing Yang, Wen Zhang, Quan Shen, Fen Huang, Yan Wang, Jianguo Zhu, Li Cui, Zhibiao Yang, and Xiuguo Hua PMCID: PMC2795755 Interaction of influenza virus NS1 protein with growth arrest-specific protein 8 Lixia Zhao, Long Xu, Xiaowei Zhou, Qingyu Zhu, Zhixin Yang, Chuanfu Zhang, Xudong Zhu, Mengbin Yu, Yingying Zhang, Xinghui Zhao, and Peitang Huang PMCID: PMC2797798 Molecular evolution of measles viruses circulated in Taiwan 1992-2008 Wen-Yueh Cheng, Lili Lee, Paul A Rota, and Dustin Chen-Fu Yang PMCID: PMC2797522 Effects of Cowpea mottle virus and Cucumber mosaic virus on six Soybean (Glycine max L.) cultivars Olawale Arogundade, Samuel O Balogun, and Taiye H Aliyu PMCID: PMC2802350 Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution Natalya Yutin, Yuri I Wolf, Didier Raoult, and Eugene V Koonin PMCID: PMC2806869 Prophylactic and therapeutic activity of fully human monoclonal antibodies directed against Influenza A M2 protein Roger R Beerli, Monika Bauer, Nicole Schmitz, Regula B Buser, Myriam Gwerder, Simone Muntwiler, Wolfgang A Renner, Philippe Saudan, and Martin F Bachmann PMCID: PMC2804611 Nuclease-resistant double-stranded DNA controls or standards for hepatitis B virus nucleic acid amplification assays Shuang Meng, Sien Zhan, and Jinming Li PMCID: PMC2803455 Factors associated with seroprevalence of hepatitis C among dentists at a large Brazilian city Vera Lúcia S Resende, Mauro Henrique G Abreu, Saul M Paiva, Rosângela Teixeira, and Isabela A Pordeus PMCID: PMC2806292 Mutagenesis of the transmembrane domain of the SARS coronavirus spike glycoprotein: refinement of the requirements for SARS coronavirus cell entry Jeroen Corver, Rene Broer, Puck van Kasteren, and Willy Spaan PMCID: PMC2805634 EBNA3C interacts with Gadd34 and counteracts the unfolded protein response Jose L Garrido, Seijii Maruo, Kenzo Takada, and Adam Rosendorff PMCID: PMC2805635 Reviews Feeling manipulated: cytomegalovirus immune manipulation Mindy Miller-Kittrell and Tim E Sparer PMCID: PMC2636769 Viruses and thyroiditis: an update Rachel Desailloud and Didier Hober PMCID: PMC2654877 Influenza virus antigenic variation, host antibody production and new approach to control epidemics Jiezhong Chen and Yi-Mo Deng PMCID: PMC2666653 Herpes simplex virus infection in pregnancy and in neonate: status of art of epidemiology, diagnosis, therapy and prevention Elena Anzivino, Daniela Fioriti, Monica Mischitelli, Anna Bellizzi, Valentina Barucca, Fernanda Chiarini, and Valeria Pietropaolo PMCID: PMC2671497 Replication of porcine circoviruses Florence Faurez, Daniel Dory, Béatrice Grasland, and André Jestin PMCID: PMC2690592 Treatment with lamivudine versus lamivudine and thymosin alpha-1 for e antigen-positive chronic hepatitis B patients: a meta-analysis Yuan-Yuan Zhang, En-Qiang Chen, Jin Yang, Yu-Rong Duan, and Hong Tang PMCID: PMC2693103 Hepatitis C Virus entry: the early steps in the viral replication cycle Ali Sabahi PMCID: PMC2726125 Meta-analysis: Adefovir dipivoxil in combination with lamivudine in patients with lamivudine-resistant hepatitis B virus En-Qiang Chen, Li-Chun Wang, Jun Lei, Lu Xu, and Hong Tang PMCID: PMC2764700 The relationship of interacting immunological components in dengue pathogenesis David G Nielsen PMCID: PMC2789730 Short Reports Conserved retinoblastoma protein-binding motif in human cytomegalovirus UL97 kinase minimally impacts viral replication but affects susceptibility to maribavir Rachel B Gill, Samuel L Frederick, Caroll B Hartline, Sunwen Chou, and Mark N Prichard PMCID: PMC2636770 Characterization of culture-positive adenovirus serotypes from respiratory specimens in Toronto, Ontario, Canada: September 2007–June 2008 Rani Yeung, AliReza Eshaghi, Ernesto Lombos, Joanne Blair, Tony Mazzulli, Laura Burton, and Steven J Drews PMCID: PMC2656483 A conserved predicted pseudoknot in the NS2A-encoding sequence of West Nile and Japanese encephalitis flaviviruses suggests NS1' may derive from ribosomal frameshifting Andrew E Firth and John F Atkins PMCID: PMC2657137 Isolation and characterization of a genotype 4 Hepatitis E virus strain from an infant in China Wen Zhang, Shixing Yang, Quan Shen, Junfeng Liu, Tongling Shan, Fen Huang, Huibo Ning, Yanjun Kang, Zhibiao Yang, Li Cui, Jianguo Zhu, and Xiuguo Hua PMCID: PMC2649060 Analysis of the coding potential of the partially overlapping 3' ORF in segment 5 of the plant fijiviruses Andrew E Firth and John F Atkins PMCID: PMC2666654 Dengue viruses binding proteins from Aedes aegypti and Aedes polynesiensis salivary glands Van-Mai Cao-Lormeau PMCID: PMC2670272 Verification of the Combimatrix influenza detection assay for the detection of influenza A subtype during the 2007–2008 influenza season in Toronto, Canada Shelly Bolotin, Ernesto Lombos, Rani Yeung, AliReza Eshaghi, Joanne Blair, and Steven J Drews PMCID: PMC2664794 The genome and proteome of a virulent Escherichia coli O157:H7 bacteriophage closely resembling Salmonella phage Felix O1 Andre Villegas, Yi-Min She, Andrew M Kropinski, Erika J Lingohr, Amanda Mazzocco, Shivani Ojha, Thomas E Waddell, Hans-Wolfgang Ackermann, Dianne M Moyles, Rafiq Ahmed, and Roger P Johnson PMCID: PMC2674420 Short hairpin-loop-structured oligodeoxynucleotides reduce HSV-1 replication Alexander Falkenhagen, Jochen Heinrich, and Karin Moelling PMCID: PMC2681447 Profile of time-dependent VEGF upregulation in human pulmonary endothelial cells, HPMEC-ST1.6R infected with DENV-1, -2, -3, and -4 viruses Azliyati Azizan, Kelly Fitzpatrick, Aimee Signorovitz, Richard Tanner, Heidi Hernandez, Lillian Stark, and Mark Sweat PMCID: PMC2684536 Characterization of the RNA-binding properties of the triple-gene-block protein 2 of Bamboo mosaic virus Hsiu-Ting Hsu, Yang-Hao Tseng, Yuan-Lin Chou, Shiaw-Hwa Su, Yau-Heiu Hsu, and Ban-Yang Chang PMCID: PMC2689192 Phylogenetic analysis of three genes of Penguinpox virus corresponding to Vaccinia virus G8R (VLTF-1), A3L (P4b) and H3L reveals that it is most closely related to Turkeypox virus, Ostrichpox virus and Pigeonpox virus Olivia Carulei, Nicola Douglass, and Anna-Lise Williamson PMCID: PMC2688499 Human lactoferrin but not lysozyme neutralizes HSV-1 and inhibits HSV-1 replication and cell-to-cell spread Hannamari Välimaa, Jorma Tenovuo, Matti Waris, and Veijo Hukkanen PMCID: PMC2685786 Sales of oseltamivir in Norway prior to the emergence of oseltamivir resistant influenza A(H1N1) viruses in 2007–08 Siri H Hauge, Hege S Blix, Katrine Borgen, Olav Hungnes, Susanne G Dudman, and Preben Aavitsland PMCID: PMC2685787 Comparative analysis between a low pathogenic and a high pathogenic influenza H5 hemagglutinin in cell entry Emily Rumschlag-Booms, Ying Guo, Jizhen Wang, Michael Caffrey, and Lijun Rong PMCID: PMC2699337 Genetic predisposition to chikungunya – a blood group study in chikungunya affected families Lokireddy Sudarsanareddy, Vemula Sarojamma, and Vadde Ramakrishna PMCID: PMC2704197 Detection of novel insect flavivirus sequences integrated in Aedes albopictus (Diptera: Culicidae) in Northern Italy David Roiz, Ana Vázquez, Mari Paz Sánchez Seco, Antonio Tenorio, and Annapaola Rizzoli PMCID: PMC2714537 Improvement of a real-time RT-PCR assay for the detection of enterovirus RNA Marian AC Piqueur, Walter A Verstrepen, Peggy Bruynseels, and An H Mertens PMCID: PMC2716329 Clinical significance of 4 patients with chronic hepatitis B achieving HBsAg clearance by treated with pegylated interferon alpha-2a for less than 1 year: a short report Jin Yang and Lian-san Zhao PMCID: PMC2714489 Prediction of viral microRNA precursors based on human microRNA precursor sequence and structural features Shiva Kumar, Faraz A Ansari, and Vinod Scaria PMCID: PMC2743665 A case for a CUG-initiated coding sequence overlapping torovirus ORF1a and encoding a novel 30 kDa product Andrew E Firth and John F Atkins PMCID: PMC2749830 Human stool contains a previously unrecognized diversity of novel astroviruses Stacy R Finkbeiner, Lori R Holtz, Yanfang Jiang, Priya Rajendran, Carl J Franz, Guoyan Zhao, Gagandeep Kang, and David Wang PMCID: PMC2765957 Recombination in West Nile Virus: minimal contribution to genomic diversity Brett E Pickett and Elliot J Lefkowitz PMCID: PMC2763871 Characterization of untranslated regions of the salmonid alphavirus 3 (SAV3) genome and construction of a SAV3 based replicon Marius Karlsen, Stephane Villoing, Espen Rimstad, and Are Nylund PMCID: PMC2772843 Genetic reconstitution of the human Adenovirus type 2 temperature-sensitive 1 mutant defective in endosomal escape Nicola Imelli, Zsolt Ruzsics, Daniel Puntener, Michele Gastaldelli, and Urs F Greber PMCID: PMC2771014 Role of L2 cysteines in papillomavirus infection and neutralization Ratish Gambhira, Subhashini Jagu, Balasubramanyam Karanam, Patricia M Day, and Richard Roden PMCID: PMC2772844 Remarkable sequence similarity between the dinoflagellate-infecting marine girus and the terrestrial pathogen African swine fever virus Hiroyuki Ogata, Kensuke Toyoda, Yuji Tomaru, Natsuko Nakayama, Yoko Shirai, Jean-Michel Claverie, and Keizo Nagasaki PMCID: PMC2777158 The first Swedish H1N2 swine influenza virus isolate represents an uncommon reassortant Ádám Bálint, Giorgi Metreveli, Frederik Widén, Siamak Zohari, Mikael Berg, Mats Isaksson, Lena HM Renström, Per Wallgren, Sándor Belák, Thomas Segall, and István Kiss PMCID: PMC2774320 Correlation between HIV viral load and aminotransferases as liver damage markers in HIV infected naive patients: a concordance cross-sectional study José Antonio Mata-Marín, Jesús Gaytán-Martínez, Bernardo Horacio Grados-Chavarría, José Luis Fuentes-Allen, Carla Ileana Arroyo-Anduiza, and Alfredo Alfaro-Mejía PMCID: PMC2777159 Bioinformatic evidence for a stem-loop structure 5'-adjacent to the IGR-IRES and for an overlapping gene in the bee paralysis dicistroviruses Andrew E Firth, Qing S Wang, Eric Jan, and John F Atkins PMCID: PMC2777877 Short report Retinoic acid inducible gene I Activates innate antiviral response against human parainfluenza virus type 3 Ahmed Sabbah and Santanu Bose PMCID: PMC2783035 Genetic diversity and phylogeography of Seewis virus in the Eurasian common shrew in Finland and Hungary Hae Ji Kang, Satoru Arai, Andrew G Hope, Jin-Won Song, Joseph A Cook, and Richard Yanagihara PMCID: PMC2789066 Evidence for a novel coding sequence overlapping the 5'-terminal ~90 codons of the Gill-associated and Yellow head okavirus envelope glycoprotein gene Andrew E Firth and John F Atkins PMCID: PMC2805633 Identification of a novel betaherpesvirus in Mus musculus Alla Teterina, Dania Richter, Franz-Rainer Matuschka, Bernhard Ehlers, and Sebastian Voigt PMCID: PMC2804612 Seropositivity of Hepatitis B virus and Hepatitis C virus dual Infection among blood donors in Nyala Teaching Hospital Mustafa Abdalla Ali Abou and Yassir Mohammed Eltahir PMCID: PMC2804613 Increased production of viral proteins by a 3'-LTR-deleted infectious clone of human T-cell leukemia virus type 1 Takeo Ohsugi PMCID: PMC2804614 Study Protocol Appearance of E1: A226V mutant Chikungunya virus in Coastal Karnataka, India during 2008 outbreak SR Santhosh, Paban Kumar Dash, Manmohan Parida, Mohasin Khan, and Putcha VL Rao PMCID: PMC2774687 Correction Presence of necrotic strains of Potato virus Y in Mexican potatoes Victoriano Roberto Ramírez-Rodríguez, Gustavo Frías-Treviño, Katia Aviña-Padilla, and Juan Pablo Martínez-Soriano PMCID: PMC2705360 Corrects: Victoriano Roberto Ramírez-Rodríguez, et al. Presence of necrotic strains of Potato virus Y in Mexican potatoes. Virol J. 2009; 6: 48. Other Issues: Journal List
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