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Commentary Formal kinetics of H1N1 epidemic Konstantin G Gurevich Theor Biol Med Model. 2009; 6: 23. Published online 2009 September 15. doi: 10.1186/1742-4682-6-23.PMCID: PMC2751748 Database Theoretical basis for reducing time-lines to the determination of positive Mycobacterium tuberculosis cultures using thymidylate kinase (TMK) assays Misaki Wayengera Theor Biol Med Model. 2009; 6: 4. Published online 2009 March 18. doi: 10.1186/1742-4682-6-4.PMCID: PMC2662806 Editorial Editorial: hypotheses about protein folding - the proteomic code and wonderfolds Paul S Agutter Theor Biol Med Model. 2009; 6: 31. Published online 2009 December 24. doi: 10.1186/1742-4682-6-31.PMCID: PMC2803780 Research Chromatid recommensuration after segmental duplication Mark N Jabbour Theor Biol Med Model. 2009; 6: 1. Published online 2009 January 7. doi: 10.1186/1742-4682-6-1.PMCID: PMC2637237 Assessing drug distribution in tissues expressing P-glycoprotein through physiologically based pharmacokinetic modeling: model structure and parameters determination Frédérique Fenneteau, Jacques Turgeon, Lucie Couture, Véronique Michaud, Jun Li, and Fahima Nekka Theor Biol Med Model. 2009; 6: 2. Published online 2009 January 15. doi: 10.1186/1742-4682-6-2.PMCID: PMC2661039 Binding of long-chain α-neurotoxin would stabilize the resting state of nAChR: A comparative study with α-conotoxin Adak Nasiripourdori, Bijan Ranjbar, and Hossein Naderi-Manesh Theor Biol Med Model. 2009; 6: 3. Published online 2009 February 11. doi: 10.1186/1742-4682-6-3.PMCID: PMC2649906 FEM-based oxygen consumption and cell viability models for avascular pancreatic islets Peter Buchwald Theor Biol Med Model. 2009; 6: 5. Published online 2009 April 16. doi: 10.1186/1742-4682-6-5.PMCID: PMC2678100 Extension of Murray's law using a non-Newtonian model of blood flow Rémi Revellin, François Rousset, David Baud, and Jocelyn Bonjour Theor Biol Med Model. 2009; 6: 7. Published online 2009 May 15. doi: 10.1186/1742-4682-6-7.PMCID: PMC2695432 Computational investigation of epithelial cell dynamic phenotype in vitro Sean HJ Kim, Sunwoo Park, Keith Mostov, Jayanta Debnath, and C Anthony Hunt Theor Biol Med Model. 2009; 6: 8. Published online 2009 May 28. doi: 10.1186/1742-4682-6-8.PMCID: PMC2696420 Theoretical study of the Usutu virus helicase 3D structure, by means of computer-aided homology modelling Dimitrios Vlachakis Theor Biol Med Model. 2009; 6: 9. Published online 2009 June 25. doi: 10.1186/1742-4682-6-9.PMCID: PMC2707372 Antimicrobial breakpoint estimation accounting for variability in pharmacokinetics Goue Denis Gohore Bi, Jun Li, and Fahima Nekka Theor Biol Med Model. 2009; 6: 10. Published online 2009 June 26. doi: 10.1186/1742-4682-6-10.PMCID: PMC2709609 Models of epidemics: when contact repetition and clustering should be included Timo Smieszek, Lena Fiebig, and Roland W Scholz Theor Biol Med Model. 2009; 6: 11. Published online 2009 June 29. doi: 10.1186/1742-4682-6-11.PMCID: PMC2709892 Ranking candidate genes in rat models of type 2 diabetes Lars Andersson, Greta Petersen, and Fredrik Ståhl Theor Biol Med Model. 2009; 6: 12. Published online 2009 July 3. doi: 10.1186/1742-4682-6-12.PMCID: PMC2709893 Examination of effects of GSK3β phosphorylation, β-catenin phosphorylation, and β-catenin degradation on kinetics of Wnt signaling pathway using computational method Ying-Chieh Sun Theor Biol Med Model. 2009; 6: 13. Published online 2009 July 22. doi: 10.1186/1742-4682-6-13.PMCID: PMC2724396 In silico evidence for the species-specific conservation of mosquito retroposons: implications as a molecular biomarker Wilson Byarugaba, Henry Kajumbula, and Misaki Wayengera Theor Biol Med Model. 2009; 6: 14. Published online 2009 July 29. doi: 10.1186/1742-4682-6-14.PMCID: PMC2723080 Using a human cardiovascular-respiratory model to characterize cardiac tamponade and pulsus paradoxus Deepa Ramachandran, Chuan Luo, Tony S Ma, and John W Clark, Jr Theor Biol Med Model. 2009; 6: 15. Published online 2009 August 6. doi: 10.1186/1742-4682-6-15.PMCID: PMC2736922 A tumor cord model for Doxorubicin delivery and dose optimization in solid tumors Steffen Eikenberry Theor Biol Med Model. 2009; 6: 16. Published online 2009 August 9. doi: 10.1186/1742-4682-6-16.PMCID: PMC2736154 Construction of a polycystic ovarian syndrome (PCOS) pathway based on the interactions of PCOS-related proteins retrieved from bibliomic data Zeti-Azura Mohamed-Hussein and Sarahani Harun Theor Biol Med Model. 2009; 6: 18. Published online 2009 September 1. doi: 10.1186/1742-4682-6-18.PMCID: PMC2743649 A model analysis of static stress in the vestibular membranes Daniel J Pender Theor Biol Med Model. 2009; 6: 19. Published online 2009 September 1. doi: 10.1186/1742-4682-6-19.PMCID: PMC2745365 Binding site of ABC transporter homology models confirmed by ABCB1 crystal structure Aina W Ravna, Ingebrigt Sylte, and Georg Sager Theor Biol Med Model. 2009; 6: 20. Published online 2009 September 4. doi: 10.1186/1742-4682-6-20.PMCID: PMC2747915 Homeostatic mechanisms in dopamine synthesis and release: a mathematical model Janet A Best, H Frederik Nijhout, and Michael C Reed Theor Biol Med Model. 2009; 6: 21. Published online 2009 September 10. doi: 10.1186/1742-4682-6-21.PMCID: PMC2755466 Comparative modeling of DNA and RNA polymerases from Moniliophthora perniciosa mitochondrial plasmid Bruno S Andrade, Alex G Taranto, Aristóteles Góes-Neto, and Angelo A Duarte Theor Biol Med Model. 2009; 6: 22. Published online 2009 September 10. doi: 10.1186/1742-4682-6-22.PMCID: PMC2746187 A mechanistic model of infection: why duration and intensity of contacts should be included in models of disease spread Timo Smieszek Theor Biol Med Model. 2009; 6: 25. Published online 2009 November 17. doi: 10.1186/1742-4682-6-25.PMCID: PMC2780993 A mathematical model of brain glucose homeostasis Lu Gaohua and Hidenori Kimura Theor Biol Med Model. 2009; 6: 26. Published online 2009 November 27. doi: 10.1186/1742-4682-6-26.PMCID: PMC2801528 The Universal Plausibility Metric (UPM) & Principle (UPP) David L Abel Theor Biol Med Model. 2009; 6: 27. Published online 2009 December 3. doi: 10.1186/1742-4682-6-27.PMCID: PMC2796651 A modeling and simulation study of siderophore mediated antagonism in dual-species biofilms Hermann J Eberl and Shannon Collinson Theor Biol Med Model. 2009; 6: 30. Published online 2009 December 22. doi: 10.1186/1742-4682-6-30.PMCID: PMC2805621 Reviews Scale-free flow of life: on the biology, economics, and physics of the cell Alexei Kurakin Theor Biol Med Model. 2009; 6: 6. Published online 2009 May 5. doi: 10.1186/1742-4682-6-6.PMCID: PMC2683819 The terrestrial evolution of metabolism and life – by the numbers Gregory C O'Kelly Theor Biol Med Model. 2009; 6: 17. Published online 2009 August 27. doi: 10.1186/1742-4682-6-17.PMCID: PMC2751747 Computational models in plant-pathogen interactions: the case of Phytophthora infestans Andrés Pinzón, Emiliano Barreto, Adriana Bernal, Luke Achenie, Andres F González Barrios, Raúl Isea, and Silvia Restrepo Theor Biol Med Model. 2009; 6: 24. Published online 2009 November 12. doi: 10.1186/1742-4682-6-24.PMCID: PMC2787490 Correction Correction: Utility of a single adjusting compartment: a novel methodology for whole body physiologically-based pharmacokinetic modelling Hirotaka Ando, Shigeru Izawa, Wataru Hori, and Ippei Nakagawa Theor Biol Med Model. 2009; 6: 29. Published online 2009 December 8. doi: 10.1186/1742-4682-6-29.PMCID: PMC2797776 Corrects: Hirotaka Ando, et al. Utility of a single adjusting compartment: a novel methodology for whole body physiologically-based pharmacokinetic modelling. Theor Biol Med Model. 2008; 5: 19.
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