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Volume 6;  2009
Commentary
Formal kinetics of H1N1 epidemic
Konstantin G Gurevich
Theor Biol Med Model. 2009; 6: 23. Published online 2009 September 15. doi: 10.1186/1742-4682-6-23.
PMCID: PMC2751748
Database
Theoretical basis for reducing time-lines to the determination of positive Mycobacterium tuberculosis cultures using thymidylate kinase (TMK) assays
Misaki Wayengera
Theor Biol Med Model. 2009; 6: 4. Published online 2009 March 18. doi: 10.1186/1742-4682-6-4.
PMCID: PMC2662806
Research
Chromatid recommensuration after segmental duplication
Mark N Jabbour
Theor Biol Med Model. 2009; 6: 1. Published online 2009 January 7. doi: 10.1186/1742-4682-6-1.
PMCID: PMC2637237
Assessing drug distribution in tissues expressing P-glycoprotein through physiologically based pharmacokinetic modeling: model structure and parameters determination
Frédérique Fenneteau, Jacques Turgeon, Lucie Couture, Véronique Michaud, Jun Li, and Fahima Nekka
Theor Biol Med Model. 2009; 6: 2. Published online 2009 January 15. doi: 10.1186/1742-4682-6-2.
PMCID: PMC2661039
Binding of long-chain α-neurotoxin would stabilize the resting state of nAChR: A comparative study with α-conotoxin
Adak Nasiripourdori, Bijan Ranjbar, and Hossein Naderi-Manesh
Theor Biol Med Model. 2009; 6: 3. Published online 2009 February 11. doi: 10.1186/1742-4682-6-3.
PMCID: PMC2649906
FEM-based oxygen consumption and cell viability models for avascular pancreatic islets
Peter Buchwald
Theor Biol Med Model. 2009; 6: 5. Published online 2009 April 16. doi: 10.1186/1742-4682-6-5.
PMCID: PMC2678100
Extension of Murray's law using a non-Newtonian model of blood flow
Rémi Revellin, François Rousset, David Baud, and Jocelyn Bonjour
Theor Biol Med Model. 2009; 6: 7. Published online 2009 May 15. doi: 10.1186/1742-4682-6-7.
PMCID: PMC2695432
Computational investigation of epithelial cell dynamic phenotype in vitro
Sean HJ Kim, Sunwoo Park, Keith Mostov, Jayanta Debnath, and C Anthony Hunt
Theor Biol Med Model. 2009; 6: 8. Published online 2009 May 28. doi: 10.1186/1742-4682-6-8.
PMCID: PMC2696420
Theoretical study of the Usutu virus helicase 3D structure, by means of computer-aided homology modelling
Dimitrios Vlachakis
Theor Biol Med Model. 2009; 6: 9. Published online 2009 June 25. doi: 10.1186/1742-4682-6-9.
PMCID: PMC2707372
Antimicrobial breakpoint estimation accounting for variability in pharmacokinetics
Goue Denis Gohore Bi, Jun Li, and Fahima Nekka
Theor Biol Med Model. 2009; 6: 10. Published online 2009 June 26. doi: 10.1186/1742-4682-6-10.
PMCID: PMC2709609
Models of epidemics: when contact repetition and clustering should be included
Timo Smieszek, Lena Fiebig, and Roland W Scholz
Theor Biol Med Model. 2009; 6: 11. Published online 2009 June 29. doi: 10.1186/1742-4682-6-11.
PMCID: PMC2709892
Ranking candidate genes in rat models of type 2 diabetes
Lars Andersson, Greta Petersen, and Fredrik Ståhl
Theor Biol Med Model. 2009; 6: 12. Published online 2009 July 3. doi: 10.1186/1742-4682-6-12.
PMCID: PMC2709893
Examination of effects of GSK3β phosphorylation, β-catenin phosphorylation, and β-catenin degradation on kinetics of Wnt signaling pathway using computational method
Ying-Chieh Sun
Theor Biol Med Model. 2009; 6: 13. Published online 2009 July 22. doi: 10.1186/1742-4682-6-13.
PMCID: PMC2724396
In silico evidence for the species-specific conservation of mosquito retroposons: implications as a molecular biomarker
Wilson Byarugaba, Henry Kajumbula, and Misaki Wayengera
Theor Biol Med Model. 2009; 6: 14. Published online 2009 July 29. doi: 10.1186/1742-4682-6-14.
PMCID: PMC2723080
Using a human cardiovascular-respiratory model to characterize cardiac tamponade and pulsus paradoxus
Deepa Ramachandran, Chuan Luo, Tony S Ma, and John W Clark, Jr
Theor Biol Med Model. 2009; 6: 15. Published online 2009 August 6. doi: 10.1186/1742-4682-6-15.
PMCID: PMC2736922
A tumor cord model for Doxorubicin delivery and dose optimization in solid tumors
Steffen Eikenberry
Theor Biol Med Model. 2009; 6: 16. Published online 2009 August 9. doi: 10.1186/1742-4682-6-16.
PMCID: PMC2736154
Construction of a polycystic ovarian syndrome (PCOS) pathway based on the interactions of PCOS-related proteins retrieved from bibliomic data
Zeti-Azura Mohamed-Hussein and Sarahani Harun
Theor Biol Med Model. 2009; 6: 18. Published online 2009 September 1. doi: 10.1186/1742-4682-6-18.
PMCID: PMC2743649
A model analysis of static stress in the vestibular membranes
Daniel J Pender
Theor Biol Med Model. 2009; 6: 19. Published online 2009 September 1. doi: 10.1186/1742-4682-6-19.
PMCID: PMC2745365
Binding site of ABC transporter homology models confirmed by ABCB1 crystal structure
Aina W Ravna, Ingebrigt Sylte, and Georg Sager
Theor Biol Med Model. 2009; 6: 20. Published online 2009 September 4. doi: 10.1186/1742-4682-6-20.
PMCID: PMC2747915
Homeostatic mechanisms in dopamine synthesis and release: a mathematical model
Janet A Best, H Frederik Nijhout, and Michael C Reed
Theor Biol Med Model. 2009; 6: 21. Published online 2009 September 10. doi: 10.1186/1742-4682-6-21.
PMCID: PMC2755466
Comparative modeling of DNA and RNA polymerases from Moniliophthora perniciosa mitochondrial plasmid
Bruno S Andrade, Alex G Taranto, Aristóteles Góes-Neto, and Angelo A Duarte
Theor Biol Med Model. 2009; 6: 22. Published online 2009 September 10. doi: 10.1186/1742-4682-6-22.
PMCID: PMC2746187
Reviews
Scale-free flow of life: on the biology, economics, and physics of the cell
Alexei Kurakin
Theor Biol Med Model. 2009; 6: 6. Published online 2009 May 5. doi: 10.1186/1742-4682-6-6.
PMCID: PMC2683819
The terrestrial evolution of metabolism and life – by the numbers
Gregory C O'Kelly
Theor Biol Med Model. 2009; 6: 17. Published online 2009 August 27. doi: 10.1186/1742-4682-6-17.
PMCID: PMC2751747
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