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Volume 3(5);  May 1, 2012

Ophthalmology Applications

Quantitative OCT-based corneal topography in keratoconus with intracorneal ring segments
Sergio Ortiz, Pablo Pérez-Merino, Nicolas Alejandre, E. Gambra, I. Jimenez-Alfaro, Susana Marcos
Biomed Opt Express. 2012 May 1; 3(5): 814–824. Published online 2012 April 2. doi: 10.1364/BOE.3.000814
PMCID:
PMC3342189
Abstract Full Text PDF–1.8M

Optical Coherence Tomography

Noninvasive in vivo structural and vascular imaging of human oral tissues with spectral domain optical coherence tomography
Bahar Davoudi, Andras Lindenmaier, Beau A. Standish, Ghassan Allo, Kostadinka Bizheva, Alex Vitkin
Biomed Opt Express. 2012 May 1; 3(5): 826–839. Published online 2012 April 2. doi: 10.1364/BOE.3.000826
PMCID:
PMC3342190
Abstract Full Text PDF–2.3M

Endoscopes, Catheters and Micro-Optics

Development of a nonlinear fiber-optic spectrometer for human lung tissue exploration
Donald A. Peyrot, Claire Lefort, Marie Steffenhagen, Tigran Mansuryan, Guillaume Ducourthial, Darine Abi-Haidar, Nicolas Sandeau, Christine Vever-Bizet, Sergei G. Kruglik, Luc Thiberville, Frédéric Louradour, Geneviève Bourg-Heckly
Biomed Opt Express. 2012 May 1; 3(5): 840–853. Published online 2012 April 3. doi: 10.1364/BOE.3.000840
PMCID:
PMC3342191
Abstract Full Text PDF–2.7M

Microscopy

Cross-phase modulation spectral shifting: nonlinear phase contrast in a pump-probe microscope
Jesse W. Wilson, Prathyush Samineni, Warren S. Warren, Martin C. Fischer
Biomed Opt Express. 2012 May 1; 3(5): 854–862. Published online 2012 April 4. doi: 10.1364/BOE.3.000854
PMCID:
PMC3342192
Abstract Full Text PDF–3.2M

Ophthalmology Applications

Chaos in ocular aberration dynamics of the human eye
Karen M. Hampson, Edward A. H. Mallen
Biomed Opt Express. 2012 May 1; 3(5): 863–877. Published online 2012 April 5. doi: 10.1364/BOE.3.000863
PMCID:
PMC3342193
Abstract Full Text PDF–3.1M

Neuroscience and Brain Imaging

Improving optical contact for functional near-infrared brain spectroscopy and imaging with brush optodes
Bilal Khan, Chester Wildey, Robert Francis, Fenghua Tian, Mauricio R. Delgado, Hanli Liu, Duncan MacFarlane, George Alexandrakis
Biomed Opt Express. 2012 May 1; 3(5): 878–898. Published online 2012 April 6. doi: 10.1364/BOE.3.000878
PMCID:
PMC3342194
Abstract Full Text PDF–1.7M

Nanotechnology and Plasmonics

Enhanced localized plasmonic detections using partially-embedded gold nanoparticles and ellipsometric measurements
Rakesh Singh Moirangthem, Mohammad Tariq Yaseen, Pei-Kuen Wei, Ji-Yen Cheng, Yia-Chung Chang
Biomed Opt Express. 2012 May 1; 3(5): 899–910. Published online 2012 April 9. doi: 10.1364/BOE.3.000899
PMCID:
PMC3342195
Abstract Full Text PDF–5.9M

Optical Coherence Tomography

Speckle variance optical coherence tomography of the rodent spinal cord: in vivo feasibility
David W. Cadotte, Adrian Mariampillai, Adam Cadotte, Kenneth K. C. Lee, Tim-Rasmus Kiehl, Brian C. Wilson, Michael G. Fehlings, Victor X. D. Yang
Biomed Opt Express. 2012 May 1; 3(5): 911–919. Published online 2012 April 10. doi: 10.1364/BOE.3.000911
PMCID:
PMC3342196
Abstract Full Text PDF–2.6M

Biosensors and Molecular Diagnostics

Reusable molecular sensor based on photonic activation control of DNA probes
Takahiro Nishimura, Yusuke Ogura, Jun Tanida
Biomed Opt Express. 2012 May 1; 3(5): 920–926. Published online 2012 April 11. doi: 10.1364/BOE.3.000920
PMCID:
PMC3342197
Abstract Full Text PDF–1.5M

Image Reconstruction and Inverse Problems

Sparsity based denoising of spectral domain optical coherence tomography images
Leyuan Fang, Shutao Li, Qing Nie, Joseph A. Izatt, Cynthia A. Toth, Sina Farsiu
Biomed Opt Express. 2012 May 1; 3(5): 927–942. Published online 2012 April 12. doi: 10.1364/BOE.3.000927
PMCID:
PMC3342198
Abstract Full Text PDF–2.5M
Sparsity enhanced spatial resolution and depth localization in diffuse optical tomography
Venkaiah C. Kavuri, Zi-Jing Lin, Fenghua Tian, Hanli Liu
Biomed Opt Express. 2012 May 1; 3(5): 943–957. Published online 2012 April 12. doi: 10.1364/BOE.3.000943
PMCID:
PMC3342199
Abstract Full Text PDF–1.8M

Spectroscopic Diagnostics

Quantitative phase spectroscopy
Matthew Rinehart, Yizheng Zhu, Adam Wax
Biomed Opt Express. 2012 May 1; 3(5): 958–965. Published online 2012 April 12. doi: 10.1364/BOE.3.000958
PMCID:
PMC3342200
Abstract Full Text PDF–8.5M

Calibration, Validation and Phantom Studies

Tissue phantoms in multicenter clinical trials for diffuse optical technologies
Albert E. Cerussi, Robert Warren, Brian Hill, Darren Roblyer, Anaїs Leproux, Amanda F. Durkin, Thomas D. O’Sullivan, Sam Keene, Hosain Haghany, Timothy Quang, William M. Mantulin, Bruce J. Tromberg
Biomed Opt Express. 2012 May 1; 3(5): 966–971. Published online 2012 April 16. doi: 10.1364/BOE.3.000966
PMCID:
PMC3342201
Abstract Full Text PDF–1.1M

Optical Coherence Tomography

Feasibility of optical coherence elastography measurements of shear wave propagation in homogeneous tissue equivalent phantoms
Marjan Razani, Adrian Mariampillai, Cuiru Sun, Timothy W. H. Luk, Victor X. D. Yang, Michael C. Kolios
Biomed Opt Express. 2012 May 1; 3(5): 972–980. Published online 2012 April 16. doi: 10.1364/BOE.3.000972
PMCID:
PMC3342202
Abstract Full Text PDF–8.7M

Neuroscience and Brain Imaging

Magnetoencephalography with a chip-scale atomic magnetometer
T. H. Sander, J. Preusser, R. Mhaskar, J. Kitching, L. Trahms, S. Knappe
Biomed Opt Express. 2012 May 1; 3(5): 981–990. Published online 2012 April 17. doi: 10.1364/BOE.3.000981
PMCID:
PMC3342203
Abstract Full Text PDF–1.2M

Cell Studies

Toward fast malaria detection by secondary speckle sensing microscopy
Dan Cojoc, Sara Finaurini, Pavel Livshits, Eran Gur, Alon Shapira, Vicente Mico, Zeev Zalevsky
Biomed Opt Express. 2012 May 1; 3(5): 991–1005. Published online 2012 April 18. doi: 10.1364/BOE.3.000991
PMCID:
PMC3342204
Abstract Full Text PDF–2.1M

Image Reconstruction and Inverse Problems

Parametric level set reconstruction methods for hyperspectral diffuse optical tomography
Fridrik Larusson, Sergio Fantini, Eric L. Miller
Biomed Opt Express. 2012 May 1; 3(5): 1006–1024. Published online 2012 April 18. doi: 10.1364/BOE.3.001006
PMCID:
PMC3342179
Abstract Full Text PDF–1.0M

Ophthalmology Applications

Imaging thermal expansion and retinal tissue changes during photocoagulation by high speed OCT
Heike H. Müller, Lars Ptaszynski, Kerstin Schlott, Christina Debbeler, Marco Bever, Stefan Koinzer, Reginald Birngruber, Ralf Brinkmann, Gereon Hüttmann
Biomed Opt Express. 2012 May 1; 3(5): 1025–1046. Published online 2012 April 19. doi: 10.1364/BOE.3.001025
PMCID:
PMC3342180
Abstract Full Text PDF–2.0M
Measurement of pulsatile total blood flow in the human and rat retina with ultrahigh speed spectral/Fourier domain OCT
WooJhon Choi, Bernhard Baumann, Jonathan J. Liu, Allen C. Clermont, Edward P. Feener, Jay S. Duker, James G. Fujimoto
Biomed Opt Express. 2012 May 1; 3(5): 1047–1061. Published online 2012 April 19. doi: 10.1364/BOE.3.001047
PMCID:
PMC3342181
Abstract Full Text PDF–1.7M
Miniature fiber-optic force sensor based on low-coherence Fabry-Pérot interferometry for vitreoretinal microsurgery
Xuan Liu, Iulian I. Iordachita, Xingchi He, Russell H. Taylor, Jin U. Kang
Biomed Opt Express. 2012 May 1; 3(5): 1062–1076. Published online 2012 April 19. doi: 10.1364/BOE.3.001062
PMCID:
PMC3342182
Abstract Full Text PDF–2.6M

Endoscopes, Catheters and Micro-Optics

In vivo imaging of unstained tissues using long gradient index lens multiphoton endoscopic systems
David M. Huland, Christopher M. Brown, Scott S. Howard, Dimitre G. Ouzounov, Ina Pavlova, Ke Wang, David R. Rivera, Watt W. Webb, Chris Xu
Biomed Opt Express. 2012 May 1; 3(5): 1077–1085. Published online 2012 April 19. doi: 10.1364/BOE.3.001077
PMCID:
PMC3342183
Abstract Full Text PDF–1.9M

Calibration, Validation and Phantom Studies

Scattering phase function spectrum makes reflectance spectrum measured from Intralipid phantoms and tissue sensitive to the device detection geometry
S. C. Kanick, V. Krishnaswamy, U. A. Gamm, H. J. C. M. Sterenborg, D. J. Robinson, A. Amelink, B. W. Pogue
Biomed Opt Express. 2012 May 1; 3(5): 1086–1100. Published online 2012 April 24. doi: 10.1364/BOE.3.001086
PMCID:
PMC3342184
Abstract Full Text PDF–1.9M

Optical Coherence Tomography

Refractive errors and corrections for OCT images in an inflated lung phantom
Ali Golabchi, J. Faust, F. N. Golabchi, D. H. Brooks, A. Gouldstone, C. A. DiMarzio
Biomed Opt Express. 2012 May 1; 3(5): 1101–1109. Published online 2012 April 25. doi: 10.1364/BOE.3.001101
PMCID:
PMC3342185
Abstract Full Text PDF–975K

Spectroscopic Diagnostics

Quantitative analysis of water distribution in human articular cartilage using terahertz time-domain spectroscopy
Euna Jung, Hyuck Jae Choi, Meehyun Lim, Hyeona Kang, Hongkyu Park, Haewook Han, Byung-hyun Min, Sangin Kim, Ikmo Park, Hanjo Lim
Biomed Opt Express. 2012 May 1; 3(5): 1110–1115. Published online 2012 April 25. doi: 10.1364/BOE.3.001110
PMCID:
PMC3342186
Abstract Full Text PDF–849K

Calibration, Validation and Phantom Studies

Characterizing the point spread function of retinal OCT devices with a model eye-based phantom
Anant Agrawal, Megan Connors, Alexander Beylin, Chia-Pin Liang, David Barton, Yu Chen, Rebekah A. Drezek, T. Joshua Pfefer
Biomed Opt Express. 2012 May 1; 3(5): 1116–1126. Published online 2012 April 26. doi: 10.1364/BOE.3.0011163
PMCID:
PMC3342187
Abstract Full Text PDF–1.9M

Image Processing

Automatic segmentation of closed-contour features in ophthalmic images using graph theory and dynamic programming
Stephanie J. Chiu, Cynthia A. Toth, Catherine Bowes Rickman, Joseph A. Izatt, Sina Farsiu
Biomed Opt Express. 2012 May 1; 3(5): 1127–1140. Published online 2012 April 26. doi: 10.1364/BOE.3.001127
PMCID:
PMC3342188
Abstract Full Text PDF–5.8M
Articles from Biomedical Optics Express are provided here courtesy of Optical Society of America
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