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Commentaries Learning about protein solubility from bacterial inclusion bodies Mónica Martínez-Alonso, Nuria González-Montalbán, Elena García-Fruitós, and Antonio Villaverde PMCID: PMC2630952 Open access to sequence: Browsing the Pichia pastoris genome Diethard Mattanovich, Nico Callewaert, Pierre Rouzé, Yao-Cheng Lin, Alexandra Graf, Andreas Redl, Petra Tiels, Brigitte Gasser, and Kristof De Schutter PMCID: PMC2768684 Reviews Pediocins: The bacteriocins of Pediococci. Sources, production, properties and applications Maria Papagianni and Sofia Anastasiadou PMCID: PMC2634753 Use of folding modulators to improve heterologous protein production in Escherichia coli Olga Kolaj, Stefania Spada, Sylvain Robin, and J Gerard Wall PMCID: PMC2642769 Microbial factories for recombinant pharmaceuticals Neus Ferrer-Miralles, Joan Domingo-Espín, José Luis Corchero, Esther Vázquez, and Antonio Villaverde PMCID: PMC2669800 Medical bioremediation of age-related diseases Jacques M Mathieu, John Schloendorn, Bruce E Rittmann, and Pedro JJ Alvarez PMCID: PMC2674406 Process development in Hansenula polymorpha and Arxula adeninivorans, a re-assessment Christoph Stöckmann, Marco Scheidle, Barbara Dittrich, Armin Merckelbach, Grit Hehmann, Georg Melmer, Doris Klee, Jochen Büchs, Hyun Ah Kang, and Gerd Gellissen PMCID: PMC2676251 Strategies for successful recombinant expression of disulfide bond-dependent proteins in Escherichia coli Ario de Marco PMCID: PMC2689190 Bacillus subtilis as potential producer for polyhydroxyalkanoates Mamtesh Singh, Sanjay KS Patel, and Vipin C Kalia PMCID: PMC2719590 Sugar metabolism, redox balance and oxidative stress response in the respiratory yeast Kluyveromyces lactis M Isabel González-Siso, Ana García-Leiro, Nuria Tarrío, and M Esperanza Cerdán PMCID: PMC2754438 Technical Note Facile promoter deletion in Escherichia coli in response to leaky expression of very robust and benign proteins from common expression vectors Martin Kawe, Uwe Horn, and Andreas Plückthun PMCID: PMC2655282 Editorial Yeast cell factory: fishing for the best one or engineering it? Danilo Porro and Paola Branduardi PMCID: PMC2768682 Research Novel expression hosts for complex secondary metabolite megasynthetases: Production of myxochromide in the thermopilic isolate Corallococcus macrosporus GT-2 Olena Perlova, Klaus Gerth, Silvia Kuhlmann, Youming Zhang, and Rolf Müller PMCID: PMC2636758 Metabolic engineering of a reduced-genome strain of Escherichia coli for L-threonine production Jun Hyoung Lee, Bong Hyun Sung, Mi Sun Kim, Frederick R Blattner, Byoung Hoon Yoon, Jung Hoe Kim, and Sun Chang Kim PMCID: PMC2634754 Isolation and characterisation of polychlorinated biphenyl (PCB) degrading fungi from a historically contaminated soil Valeria Tigini, Valeria Prigione, Sara Di Toro, Fabio Fava, and Giovanna C Varese PMCID: PMC2636759 Microbial nar-GFP cell sensors reveal oxygen limitations in highly agitated and aerated laboratory-scale fermentors Jose R Garcia, Hyung J Cha, Govind Rao, Mark R Marten, and William E Bentley PMCID: PMC2630296 A novel Ecotin-Ubiquitin-Tag (ECUT) for efficient, soluble peptide production in the periplasm of Escherichia coli Michael Paal, Thomas Heel, Rainer Schneider, and Bernhard Auer PMCID: PMC2649888 Altering the ribosomal subunit ratio in yeast maximizes recombinant protein yield Nicklas Bonander, Richard AJ Darby, Ljuban Grgic, Nagamani Bora, Jikai Wen, Saverio Brogna, David R Poyner, Michael AA O'Neill, and Roslyn M Bill PMCID: PMC2654770 Export of recombinant proteins in Escherichia coli using ABC transporter with an attached lipase ABC transporter recognition domain (LARD) Chan Woo Chung, Jinsun You, Kyeongyeon Kim, Yuseok Moon, Hoeon Kim, and Jung Hoon Ahn PMCID: PMC2642768 Metabolite profiling studies in Saccharomyces cerevisiae: an assisting tool to prioritize host targets for antiviral drug screening Konstantin Schneider, Jens Olaf Krömer, Christoph Wittmann, Isabel Alves-Rodrigues, Andreas Meyerhans, Juana Diez, and Elmar Heinzle PMCID: PMC2658664 Simple high-cell density fed-batch technique for high-level recombinant protein production with Pichia pastoris: Application to intracellular production of Hepatitis B surface antigen Chandrasekhar Gurramkonda, Ahmad Adnan, Thomas Gäbel, Heinrich Lünsdorf, Anton Ross, Satish Kumar Nemani, Sathyamangalam Swaminathan, Navin Khanna, and Ursula Rinas PMCID: PMC2646686 Surface displaced alfa-enolase of Lactobacillus plantarum is a fibronectin binding protein Cristiana Castaldo, Valeria Vastano, Rosa Anna Siciliano, Marco Candela, Manuela Vici, Lidia Muscariello, Rosangela Marasco, and Margherita Sacco PMCID: PMC2654425 Bioreactor mixing efficiency modulates the activity of a prpoS::GFP reporter gene in E. coli Frank Delvigne, Mathieu Boxus, Sophie Ingels, and Philippe Thonart PMCID: PMC2650683 Synthesis of rhamnolipid biosurfactant and mode of hexadecane uptake by Pseudomonas species Swaranjit Singh Cameotra and Pooja Singh PMCID: PMC2664780 Phenotypes and gene expression profiles of Saccharopolyspora erythraea rifampicin-resistant (rif) mutants affected in erythromycin production Elisabetta Carata, Clelia Peano, Salvatore M Tredici, Francesco Ferrari, Adelfia Talà, Giorgio Corti, Silvio Bicciato, Gianluca De Bellis, and Pietro Alifano PMCID: PMC2667423 Metabolic engineering for improving anthranilate synthesis from glucose in Escherichia coli Víctor E Balderas-Hernández, Andrea Sabido-Ramos, Patricia Silva, Natividad Cabrera-Valladares, Georgina Hernández-Chávez, José L Báez-Viveros, Alfredo Martínez, Francisco Bolívar, and Guillermo Gosset PMCID: PMC2671490 Optimization of physical factors affecting the production of thermo-stable organic solvent-tolerant protease from a newly isolated halo tolerant Bacillus subtilis strain Rand Randa A Abusham, Raja Noor Zaliha RA Rahman, Abu Bakar Salleh, and Mahiran Basri PMCID: PMC2671491 Homolactic fermentation from glucose and cellobiose using Bacillus subtilis Susana Romero-Garcia, Claudia Hernández-Bustos, Enrique Merino, Guillermo Gosset, and Alfredo Martinez PMCID: PMC2680810 Identification of potentially safe promising fungal cell factories for the production of polyketide natural food colorants using chemotaxonomic rationale Sameer AS Mapari, Anne S Meyer, Ulf Thrane, and Jens C Frisvad PMCID: PMC2680811 OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis Lake-Ee Quek, Christoph Wittmann, Lars K Nielsen, and Jens O Krömer PMCID: PMC2689189 Factors affecting plasmid production in Escherichia coli from a resource allocation standpoint Drew S Cunningham, Richard R Koepsel, Mohammad M Ataai, and Michael M Domach PMCID: PMC2702362 Heme and menaquinone induced electron transport in lactic acid bacteria Rob Brooijmans, Bart Smit, Filipe Santos, Jan van Riel, Willem M de Vos, and Jeroen Hugenholtz PMCID: PMC2696406 Genome, secretome and glucose transport highlight unique features of the protein production host Pichia pastoris Diethard Mattanovich, Alexandra Graf, Johannes Stadlmann, Martin Dragosits, Andreas Redl, Michael Maurer, Martin Kleinheinz, Michael Sauer, Friedrich Altmann, and Brigitte Gasser PMCID: PMC2702363 Overexpression and simple purification of the Thermotoga maritima 6-phosphogluconate dehydrogenase in Escherichia coli and its application for NADPH regeneration Yiran Wang and Y-H Percival Zhang PMCID: PMC2701922 Validation of a high-throughput fermentation system based on online monitoring of biomass and fluorescence in continuously shaken microtiter plates Frank Kensy, Emerson Zang, Christian Faulhammer, Rung-Kai Tan, and Jochen Büchs PMCID: PMC2700080 Components of the E. coli envelope are affected by and can react to protein over-production in the cytoplasm Riccardo Villa, Marina Lotti, and Pietro Gatti-Lafranconi PMCID: PMC2701923 PimT, an amino acid exporter controls polyene production via secretion of the quorum sensing pimaricin-inducer PI-factor in Streptomyces natalensis Cláudia M Vicente, Javier Santos-Aberturas, Susana M Guerra, Tamara D Payero, Juan F Martín, and Jesús F Aparicio PMCID: PMC2698837 Molecular cloning and expression of a novel trehalose synthase gene from Enterobacter hormaechei Ming Yue, Xiu Li Wu, Wei Na Gong, and Hong Biao Ding PMCID: PMC2701924 Developing a scalable model of recombinant protein yield from Pichia pastoris: the influence of culture conditions, biomass and induction regime William J Holmes, Richard AJ Darby, Martin DB Wilks, Rodney Smith, and Roslyn M Bill PMCID: PMC2717918 Regioselective biooxidation of (+)-valencene by recombinant E. coli expressing CYP109B1 from Bacillus subtilis in a two-liquid-phase system Marco Girhard, Kazuhiro Machida, Masashi Itoh, Rolf D Schmid, Akira Arisawa, and Vlada B Urlacher PMCID: PMC2717049 Interactive visualization of clusters in microarray data: an efficient tool for improved metabolic analysis of E. coli Theresa Scharl, Gerald Striedner, Florentina Pötschacher, Friedrich Leisch, and Karl Bayer PMCID: PMC2717919 A novel bacterial isolate Stenotrophomonas maltophilia as living factory for synthesis of gold nanoparticles Yogesh Nangia, Nishima Wangoo, Nisha Goyal, G Shekhawat, and C Raman Suri PMCID: PMC2719591 Arabinose and xylose fermentation by recombinant Saccharomyces cerevisiae expressing a fungal pentose utilization pathway Maurizio Bettiga, Oskar Bengtsson, Bärbel Hahn-Hägerdal, and Marie F Gorwa-Grauslund PMCID: PMC2720912 Rare codon content affects the solubility of recombinant proteins in a codon bias-adjusted Escherichia coli strain Germán L Rosano and Eduardo A Ceccarelli PMCID: PMC2723077 Robo-Lector – a novel platform for automated high-throughput cultivations in microtiter plates with high information content Robert Huber, Daniel Ritter, Till Hering, Anne-Kathrin Hillmer, Frank Kensy, Carsten Müller, Le Wang, and Jochen Büchs PMCID: PMC2731075 Development and experimental verification of a genome-scale metabolic model for Corynebacterium glutamicum Yohei Shinfuku, Natee Sorpitiporn, Masahiro Sono, Chikara Furusawa, Takashi Hirasawa, and Hiroshi Shimizu PMCID: PMC2728707 Comparisons of optically monitored small-scale stirred tank vessels to optically controlled disposable bag bioreactors Michael A Hanson, Kurt A Brorson, Antonio R Moreira, and Govind Rao PMCID: PMC2731076 Yeast artificial chromosomes employed for random assembly of biosynthetic pathways and production of diverse compounds in Saccharomyces cerevisiae Michael Naesby, Søren VS Nielsen, Curt AF Nielsen, Trine Green, Thomas Ø Tange, Ernesto Simón, Philipp Knechtle, Anders Hansson, Markus S Schwab, Olca Titiz, Christophe Folly, Roberto E Archila, Milena Maver, Stephan van Sint Fiet, Thiamo Boussemghoune, Michael Janes, A S Sathish Kumar, Shailendra P Sonkar, Partha P Mitra, V Ajai Kumar Benjamin, Nimitha Korrapati, Inala Suman, Esben H Hansen, Tanja Thybo, Neil Goldsmith, and Alexandra Santana Sorensen PMCID: PMC2732597 Complete PHB mobilization in Escherichia coli enhances the stress tolerance: a potential biotechnological application Qian Wang, Hongmin Yu, Yongzhen Xia, Zhen Kang, and Qingsheng Qi PMCID: PMC2746179 Surface display of heterologous proteins in Bacillus thuringiensis using a peptidoglycan hydrolase anchor Xiaohu Shao, Mengtian Jiang, Ziniu Yu, Hao Cai, and Lin Li PMCID: PMC2754439 Increased expression of the oxidative pentose phosphate pathway and gluconeogenesis in anaerobically growing xylose-utilizing Saccharomyces cerevisiae David Runquist, Bärbel Hahn-Hägerdal, and Maurizio Bettiga PMCID: PMC2760498 Expression of active human sialyltransferase ST6GalNAcI in Escherichia coli Georgios Skretas, Sean Carroll, Shawn DeFrees, Marc F Schwartz, Karl F Johnson, and George Georgiou PMCID: PMC2762462 An insight into the role of phosphotransacetylase (pta) and the acetate/acetyl-CoA node in Escherichia coli Sara Castaño-Cerezo, José M Pastor, Sergio Renilla, Vicente Bernal, José L Iborra, and Manuel Cánovas PMCID: PMC2774668 Tetrapisispora phaffii killer toxin is a highly specific β-glucanase that disrupts the integrity of the yeast cell wall Francesca Comitini, Ilaria Mannazzu, and Maurizio Ciani PMCID: PMC2779178 Characterization of the amyloid bacterial inclusion bodies of the HET-s fungal prion Raimon Sabaté, Alba Espargaró, Sven J Saupe, and Salvador Ventura PMCID: PMC2774669 Engineering an efficient secretion of leech carboxypeptidase inhibitor in Escherichia coli Juan-Miguel Puertas and Jean-Michel Betton PMCID: PMC2775724 High yield recombinant thermostable α-amylase production using an improved Bacillus licheniformis system Dandan Niu, Zhirui Zuo, Gui-Yang Shi, and Zheng-Xiang Wang PMCID: PMC2776586 Cloning, expression in Pichia pastoris, and characterization of a thermostable GH5 mannan endo-1,4-β-mannosidase from Aspergillus niger BK01 Do Bien-Cuong, Dang Thi-Thu, Jean-Guy Berrin, Dietmar Haltrich, To Kim-Anh, Jean-Claude Sigoillot, and Montarop Yamabhai PMCID: PMC2780388 Overexpression and characterization of medium-chain-length polyhydroxyalkanoate granule bound polymerases from Pseudomonas putida GPo1 Qun Ren, Guy de Roo, Bernard Witholt, Manfred Zinn, and Linda Thöny-Meyer PMCID: PMC2788523 Selectively improving nikkomycin Z production by blocking the imidazolone biosynthetic pathway of nikkomycin X and uracil feeding in Streptomyces ansochromogenes Guojian Liao, Jine Li, Lei Li, Haihua Yang, Yuqing Tian, and Huarong Tan PMCID: PMC2787493 Functional analysis of conserved aromatic amino acids in the discoidin domain of Paenibacillus β-1,3-glucanase Yueh-Mei Cheng, Feng-Chia Hsieh, and Menghsiao Meng PMCID: PMC2789033 Bacillus amyloliquefaciens GA1 as a source of potent antibiotics and other secondary metabolites for biocontrol of plant pathogens Anthony Arguelles-Arias, Marc Ongena, Badre Halimi, Yannick Lara, Alain Brans, Bernard Joris, and Patrick Fickers PMCID: PMC2787494 Retraction Retraction: A novel bacterial isolate Stenotrophomonas maltophilia as living factory for synthesis of gold nanoparticles Yogesh Nangia, Nishima Wangoo, Nisha Goyal, G Shekhawat, and C Raman Suri PMCID: PMC2768683 Retracts: Yogesh Nangia, et al. A novel bacterial isolate Stenotrophomonas maltophilia as living factory for synthesis of gold nanoparticles. Microb Cell Fact. 2009; 8: 39. Other Issues: Journal List
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