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Volume 5(9);  2004
Comment
Fame is a bubble, but not for some
Gregory A Petsko
Genome Biol. 2004; 5(9): 114. Published online 2004 August 24. doi: 10.1186/gb-2004-5-9-114.
PMCID: PMC522860
Opinion
Predicting and validating microRNA targets
Eric C Lai
Genome Biol. 2004; 5(9): 115. Published online 2004 August 31. doi: 10.1186/gb-2004-5-9-115.
PMCID: PMC522861
Minireviews
What's in a centromere?
Jonathan C Lamb, James Theuri, and James A Birchler
Genome Biol. 2004; 5(9): 239. Published online 2004 August 17. doi: 10.1186/gb-2004-5-9-239.
PMCID: PMC522862
Chemical genomics in yeast
Charles Brenner
Genome Biol. 2004; 5(9): 240. Published online 2004 August 27. doi: 10.1186/gb-2004-5-9-240.
PMCID: PMC522863
Protein Family Review
The cyclooxygenases
NV Chandrasekharan and Daniel L Simmons
Genome Biol. 2004; 5(9): 241. Published online 2004 August 27. doi: 10.1186/gb-2004-5-9-241.
PMCID: PMC522864
Meeting Reports
RNAi for research and therapy
Michael A Goldman
Genome Biol. 2004; 5(9): 342. Published online 2004 August 17. doi: 10.1186/gb-2004-5-9-342.
PMCID: PMC522865
Structural genomics and structural biology: compare and contrast
John-Marc Chandonia, Thomas N Earnest, and Steven E Brenner
Genome Biol. 2004; 5(9): 343. Published online 2004 August 25. doi: 10.1186/gb-2004-5-9-343.
PMCID: PMC522866
Celebrating 40 years of biochemistry in Europe
Errol C Friedberg and Tomas Lindahl
Genome Biol. 2004; 5(9): 344. Published online 2004 August 27. doi: 10.1186/gb-2004-5-9-344.
PMCID: PMC522867
Method
Improving identification of differentially expressed genes in microarray studies using information from public databases
Richard D Kim and Peter J Park
Genome Biol. 2004; 5(9): R70. Published online 2004 August 26. doi: 10.1186/gb-2004-5-9-r70.
PMCID: PMC522877
A catalog of human cDNA expression clones and its application to structural genomics
Konrad Büssow, Claudia Quedenau, Volker Sievert, Janett Tischer, Christoph Scheich, Harald Seitz, Brigitte Hieke, Frank H Niesen, Frank Götz, Ulrich Harttig, and Hans Lehrach
Genome Biol. 2004; 5(9): R71. Published online 2004 August 17. doi: 10.1186/gb-2004-5-9-r71.
PMCID: PMC522878
Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae
Jeanne Boyer, Gwenaël Badis, Cécile Fairhead, Emmanuel Talla, Florence Hantraye, Emmanuelle Fabre, Gilles Fischer, Christophe Hennequin, Romain Koszul, Ingrid Lafontaine, Odile Ozier-Kalogeropoulos, Miria Ricchetti, Guy-Franck Richard, Agnès Thierry, and Bernard Dujon
Genome Biol. 2004; 5(9): R72. Published online 2004 August 31. doi: 10.1186/gb-2004-5-9-r72.
PMCID: PMC522879
Research
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura
Benjamin P Berman, Barret D Pfeiffer, Todd R Laverty, Steven L Salzberg, Gerald M Rubin, Michael B Eisen, and Susan E Celniker
Genome Biol. 2004; 5(9): R61. Published online 2004 August 20. doi: 10.1186/gb-2004-5-9-r61.
PMCID: PMC522868
Global nucleosome occupancy in yeast
Bradley E Bernstein, Chih Long Liu, Emily L Humphrey, Ethan O Perlstein, and Stuart L Schreiber
Genome Biol. 2004; 5(9): R62. Published online 2004 August 20. doi: 10.1186/gb-2004-5-9-r62.
PMCID: PMC522869
A first-draft human protein-interaction map
Ben Lehner and Andrew G Fraser
Genome Biol. 2004; 5(9): R63. Published online 2004 August 13. doi: 10.1186/gb-2004-5-9-r63.
PMCID: PMC522870
Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes
Yang Liu, Paul M Harrison, Victor Kunin, and Mark Gerstein
Genome Biol. 2004; 5(9): R64. Published online 2004 August 26. doi: 10.1186/gb-2004-5-9-r64.
PMCID: PMC522871
Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
Xiu-Jie Wang, José L Reyes, Nam-Hai Chua, and Terry Gaasterland
Genome Biol. 2004; 5(9): R65. Published online 2004 August 31. doi: 10.1186/gb-2004-5-9-r65.
PMCID: PMC522872
Discovery of estrogen receptor α target genes and response elements in breast tumor cells
Chin-Yo Lin, Anders Ström, Vinsensius Berlian Vega, Say Li Kong, Ai Li Yeo, Jane S Thomsen, Wan Ching Chan, Balraj Doray, Dhinoth K Bangarusamy, Adaikalavan Ramasamy, Liza A Vergara, Suisheng Tang, Allen Chong, Vladimir B Bajic, Lance D Miller, Jan-Åke Gustafsson, and Edison T Liu
Genome Biol. 2004; 5(9): R66. Published online 2004 August 12. doi: 10.1186/gb-2004-5-9-r66.
PMCID: PMC522873
An Ambystoma mexicanum EST sequencing project: analysis of 17,352 expressed sequence tags from embryonic and regenerating blastema cDNA libraries
Bianca Habermann, Anne-Gaelle Bebin, Stephan Herklotz, Michael Volkmer, Kay Eckelt, Kerstin Pehlke, Hans Henning Epperlein, Hans Konrad Schackert, Glenis Wiebe, and Elly M Tanaka
Genome Biol. 2004; 5(9): R67. Published online 2004 August 13. doi: 10.1186/gb-2004-5-9-r67.
PMCID: PMC522874
Microarray analysis of microRNA expression in the developing mammalian brain
Eric A Miska, Ezequiel Alvarez-Saavedra, Matthew Townsend, Akira Yoshii, Nenad Šestan, Pasko Rakic, Martha Constantine-Paton, and H Robert Horvitz
Genome Biol. 2004; 5(9): R68. Published online 2004 August 31. doi: 10.1186/gb-2004-5-9-r68.
PMCID: PMC522875
Function-informed transcriptome analysis of Drosophila renal tubule
Jing Wang, Laura Kean, Jingli Yang, Adrian K Allan, Shireen A Davies, Pawel Herzyk, and Julian AT Dow
Genome Biol. 2004; 5(9): R69. Published online 2004 August 26. doi: 10.1186/gb-2004-5-9-r69.
PMCID: PMC522876
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