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Prediction of protein conformation. P Y Chou and G D Fasman Is Cited by the Following 435 Articles in this Archive: Prediction of backbone dihedral angles and protein secondary structure using support vector machines Petros Kountouris and Jonathan D Hirst PMCID: PMC2811710 A sequence-based hybrid predictor for identifying conformationally ambivalent regions in proteins Yu-Cheng Liu, Meng-Han Yang, Win-Li Lin, Chien-Kang Huang, and Yen-Jen Oyang PMCID: PMC2788375 Amyloidogenic determinants are usually not buried Kimon K Frousios, Vassiliki A Iconomidou, Carolina-Maria Karletidi, and Stavros J Hamodrakas PMCID: PMC2714319 NHE3 regulatory complexes Mark Donowitz, Sachin Mohan, Cindy Xinjun Zhu, Tian-E Chen, Rong Lin, Boyoung Cha, Nicholas C. Zachos, Rakhilya Murtazina, Rafiquel Sarker, and Xuhang Li PMCID: PMC2683010 The Human Gene Mutation Database: 2008 update Peter D Stenson, Matthew Mort, Edward V Ball, Katy Howells, Andrew D Phillips, Nick ST Thomas, and David N Cooper PMCID: PMC2651586 Identification and Role of the Homodimerization Interface of the
Glycosylphosphatidylinositol-anchored Membrane Type 6 Matrix Metalloproteinase
(MMP25) Huiren Zhao, Anjum Sohail, Qing Sun, Qicun Shi, Seaho Kim, Shahriar Mobashery, and Rafael Fridman PMCID: PMC2596393 A novel Na+ channel splice form contributes to the regulation of an androgen-dependent social signal He Liu, Ming-ming Wu, and Harold H Zakon PMCID: PMC2615813 Published in final edited form as: J Neurosci. 2008 September 10; 28(37): 9173–9182. doi: 10.1523/JNEUROSCI.2783-08.2008. Impact of residue accessible surface area on the prediction of protein secondary structures Amir Momen-Roknabadi, Mehdi Sadeghi, Hamid Pezeshk, and Sayed-Amir Marashi PMCID: PMC2553345 Dynamic Surface Activity by Folding and Unfolding an Amphiphilic α-Helix Vikas Jain, Angela Jimenez, Charles Maldarelli, and Raymond S. Tu PMCID: PMC2646762 Dynamic Surface Activity by Folding and Unfolding an Amphiphilic α-Helix Vikas Jain, Angela Jimenez, Charles Maldarelli, and Raymond S. Tu PMCID: PMC2646762 Expression and characterization of recombinant interferon gamma (IFN-γ) from the nine-banded armadillo (Dasypus novemcinctus) and its effect on Mycobacterium leprae-infected macrophages M. T. Peña, J. E. Adams, L. B Adams, T. P. Gillis, D. L. Williams, J. S. Spencer, J. L Krahenbuhl, and R. W. Truman PMCID: PMC2542875 Published in final edited form as: Cytokine. 2008 August; 43(2): 124–131. Published online 2008 June 16. doi: 10.1016/j.cyto.2008.04.014. The Protein Folding Problem Ken A. Dill, S. Banu Ozkan, M. Scott Shell, and Thomas R. Weikl PMCID: PMC2443096 Published in final edited form as: Annu Rev Biophys. 2008 June 9; 37: 289–316. doi: 10.1146/annurev.biophys.37.092707.153558. Lipase Expression in Pseudomonas alcaligenes Is Under the Control of a Two-Component Regulatory System Joanna Krzeslak, Gijs Gerritse, Ronald van Merkerk, Robbert H. Cool, and Wim J. Quax PMCID: PMC2258621 Detailed estimation of bioinformatics prediction reliability through the Fragmented Prediction Performance Plots Oliviero Carugo PMCID: PMC2148069 Spectrum of disease-causing mutations in protein secondary structures Sofia Khan and Mauno Vihinen PMCID: PMC1995201 The N-terminal domain of apolipoprotein B-100: structural characterization by homology modeling Hassan Al-Ali and Hassan M Khachfe PMCID: PMC1940002 Genomic tagging of endogenous Type IIβ Phosphatidylinositol 5-phosphate 4-kinase in DT40 cells reveals a nuclear localisation Jonathan P. Richardson, Minchuan Wang, Jonathan H. Clarke, Ketan J. Patel, and R.F. Irvine PMCID: PMC1868964 A simple algorithm locates β-strands in the amyloid fibril core of α-synuclein, Aβ, and tau using the amino acid sequence alone Shahin Zibaee, O. Sumner Makin, Michel Goedert, and Louise C. Serpell PMCID: PMC2206631 The alanine-rich XAO peptide adopts a heterogeneous population, including turn-like and polyproline II conformations Reinhard Schweitzer-Stenner and Thomas J. Measey PMCID: PMC1871840 Cyclic Modular β-Sheets R. Jeremy Woods, Justin O. Brower, Elena Castellanos, Mehrnoosh Hashemzadeh, Omid Khakshoor, Wade A. Russu, and James S. Nowick PMCID: PMC2597679 Published in final edited form as: J Am Chem Soc. 2007 March 7; 129(9): 2548–2558. Published online 2007 February 13. doi: 10.1021/ja0667965. Hydrophobic Surface Burial is the Major Stability Determinant of a Flat, Single-Layer β-Sheet Shude Yan, Grzegorz Gawlak, Koki Makabe, Valentina Tereshko, Akiko Koide, and Shohei Koide PMCID: PMC1995161 Published in final edited form as: J Mol Biol. 2007 April 20; 368(1): 230–243. Published online 2007 February 7. doi: 10.1016/j.jmb.2007.02.003. Improved Chou-Fasman method for protein secondary structure prediction Hang Chen, Fei Gu, and Zhengge Huang PMCID: PMC1780123 Cytoplasmic Domain of Human Myelin Protein Zero Likely Folded as β-Structure in Compact Myelin XiaoYang Luo, Deepak Sharma, Hideyo Inouye, Daniel Lee, Robin L. Avila, Mario Salmona, and Daniel A. Kirschner PMCID: PMC1796833 Identification of putative domain linkers by a neural network – application to a large sequence database Satoshi Miyazaki, Yutaka Kuroda, and Shigeyuki Yokoyama PMCID: PMC1538634 Improving the accuracy of protein secondary structure prediction using structural alignment Scott Montgomerie, Shan Sundararaj, Warren J Gallin, and David S Wishart PMCID: PMC1550433 Amyloid Fibrils of Glucagon Characterized by High-Resolution Atomic Force Microscopy Kathy L. De Jong, Bev Incledon, Christopher M. Yip, and Michael R. DeFelippis PMCID: PMC1544305 Natural selection and molecular evolution in primate PAX9 gene, a major determinant of tooth development Tiago V. Pereira, Francisco M. Salzano, Adrianna Mostowska, Wieslaw H. Trzeciak, Andrés Ruiz-Linares, José A. B. Chies, Carmen Saavedra, Cleusa Nagamachi, Ana M. Hurtado, Kim Hill, Dinorah Castro-de-Guerra, Wilson A. Silva-Júnior, and Maria-Cátira Bortolini PMCID: PMC1458632 Structural Instability of the Prion Protein upon M205S/R Mutations Revealed by Molecular Dynamics Simulations Thomas Hirschberger, Martina Stork, Bernhard Schropp, Konstanze F. Winklhofer, Jörg Tatzelt, and Paul Tavan PMCID: PMC1459491 Unfolding, aggregation, and amyloid formation by the tetramerization domain from mutant p53 associated with lung cancer Yuichiro Higashimoto, Yuya Asanomi, Satoru Takakusagi, Marc S. Lewis, Kohei Uosaki, Stewart R. Durell, Carl W. Anderson, Ettore Appella, and Kazuyasu Sakaguchi PMCID: PMC2536691 Published in final edited form as: Biochemistry. 2006 February 14; 45(6): 1608–1619. doi: 10.1021/bi051192j. A Hybrid Genetic-Neural System for Predicting Protein Secondary Structure Giuliano Armano, Gianmaria Mancosu, Luciano Milanesi, Alessandro Orro, Massimiliano Saba, and Eloisa Vargiu PMCID: PMC1866382
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