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FramePlot: a new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G + C content. J Ishikawa and K Hotta Is Cited by the Following 63 Articles in this Archive: Molecular Cloning and Heterologous Expression of a Biosynthetic Gene Cluster for the Antitubercular Agent d-Cycloserine Produced by Streptomyces lavendulae Takanori Kumagai, Yusuke Koyama, Kosuke Oda, Masafumi Noda, Yasuyuki Matoba, and Masanori Sugiyama PMCID: PMC2825969 Insights into the Evolution of Macrolactam Biosynthesis through Cloning and Comparative Analysis of the Biosynthetic Gene Cluster for a Novel Macrocyclic Lactam, ML-449 Hanne Jørgensen, Kristin F. Degnes, Alexander Dikiy, Espen Fjærvik, Geir Klinkenberg, and Sergey B. Zotchev PMCID: PMC2798639 Characterization of the Polyoxin Biosynthetic Gene Cluster from
Streptomyces cacaoi and Engineered Production of Polyoxin
H Wenqing Chen, Tingting Huang, Xinyi He, Qingqing Meng, Delin You, Linquan Bai, Jialiang Li, Mingxuan Wu, Rui Li, Zhoujie Xie, Huchen Zhou, Xiufen Zhou, Huarong Tan, and Zixin Deng PMCID: PMC2667750 Identifying the Source of Unknown Microcystin Genes and Predicting Microcystin Variants by Comparing Genes within Uncultured Cyanobacterial Cells Christopher J. Allender, Gary R. LeCleir, Johanna M. Rinta-Kanto, Randall L. Small, Michael F. Satchwell, Gregory L. Boyer, and Steven W. Wilhelm PMCID: PMC2687263 Isolation and Characterization of Azotobacter vinelandii Mutants Impaired in Alkylresorcinol Synthesis: Alkylresorcinols Are Not Essential for Cyst Desiccation Resistance Daniel Segura, Odon Vite, Yanet Romero, Soledad Moreno, Miguel Castañeda, and Guadalupe Espín PMCID: PMC2681798 Alanylclavam Biosynthetic Genes Are Clustered Together with One Group of Clavulanic Acid Biosynthetic Genes in Streptomyces clavuligerus Nathan J. Zelyas, Hui Cai, Thomas Kwong, and Susan E. Jensen PMCID: PMC2593231 Complete Genome Sequence of the Soil Actinomycete Kocuria rhizophila Hiromi Takarada, Mitsuo Sekine, Hiroki Kosugi, Yasunori Matsuo, Takatomo Fujisawa, Seiha Omata, Emi Kishi, Ai Shimizu, Naofumi Tsukatani, Satoshi Tanikawa, Nobuyuki Fujita, and Shigeaki Harayama PMCID: PMC2446769 Characterization of Replication and Conjugation of Streptomyces Circular Plasmids pFP1 and pFP11 and Their Ability To Propagate in Linear Mode with Artificially Attached Telomeres Ran Zhang, Ana Zeng, Ping Fang, and Zhongjun Qin PMCID: PMC2423013 The complete sequence and functional analysis of pANL, the large plasmid of the unicellular freshwater cyanobacterium Synechococcus elongatus PCC 7942 You Chen, C. Kay Holtman, Roy D. Magnuson, Philip A. Youderian, and Susan S. Golden PMCID: PMC2427279 Published in final edited form as: Plasmid. 2008 May; 59(3): 176–192. Published online 2008 March 18. doi: 10.1016/j.plasmid.2008.01.005. Discovery of the Autonomously Replicating Plasmid pMF1 from Myxococcus fulvus and Development of a Gene Cloning System in Myxococcus xanthus Jing-yi Zhao, Li Zhong, Mei-juan Shen, Zhi-jie Xia, Qiu-xiang Cheng, Xia Sun, Guo-ping Zhao, Yue-zhong Li, and Zhong-jun Qin PMCID: PMC2292591 Vibrio vulnificus Biotype 2 Serovar E gne but Not galE Is Essential for Lipopolysaccharide Biosynthesis and Virulence Esmeralda Valiente, Natalia Jiménez, Susana Merino, Juan M. Tomás, and Carmen Amaro PMCID: PMC2292876 Identification of Two Catalases in Azotobacter vinelandii: a KatG Homologue and a Novel Bacterial Cytochrome c Catalase, CCCAv James R. Sandercock and William J. Page PMCID: PMC2223588 Identification of the Biosynthetic Gene Cluster and an Additional Gene for Resistance to the Antituberculosis Drug Capreomycin Elizabeth A. Felnagle, Michelle R. Rondon, Andrew D. Berti, Heidi A. Crosby, and Michael G. Thomas PMCID: PMC1932801 Diffusible Signal Factor-Dependent Cell-Cell Signaling and Virulence in the Nosocomial Pathogen Stenotrophomonas maltophilia Yvonne Fouhy, Karl Scanlon, Katherine Schouest, Charles Spillane, Lisa Crossman, Matthew B. Avison, Robert P. Ryan, and J. Maxwell Dow PMCID: PMC1913462 Genome Sequence and Analysis of a Propionibacterium acnes Bacteriophage Mark D. Farrar, Karen M. Howson, Richard A. Bojar, David West, James C. Towler, James Parry, Katharine Pelton, and Keith T. Holland PMCID: PMC1913406 A Streamlined Metabolic Pathway For the Biosynthesis of Moenomycin A Bohdan Ostash, Alan Saghatelian, and Suzanne Walker PMCID: PMC1936435 Published in final edited form as: Chem Biol. 2007 March; 14(3): 257–267. doi: 10.1016/j.chembiol.2007.01.008. Characterization of the Genetic Components of Streptomyces lividans Linear Plasmid SLP2 for Replication in Circular and Linear Modes Mingxuan Xu, Yingmin Zhu, Ran Zhang, Meijuan Shen, Weihong Jiang, Guoping Zhao, and Zhongjun Qin PMCID: PMC1595531 Novel Streptomycin Resistance Gene from Mycobacterium fortuitum Santiago Ramón-García, Isabel Otal, Carlos Martín, Rafael Gómez-Lus, and José A. Aínsa PMCID: PMC1635185 Diversity of Telomere Palindromic Sequences and Replication Genes among Streptomyces Linear Plasmids Ran Zhang, Yong Yang, Ping Fang, Chenglin Jiang, Lihua Xu, Yingmin Zhu, Meijuan Shen, Haiyang Xia, Jianfu Zhao, Tongbin Chen, and Zhongjun Qin PMCID: PMC1563600 Phase Variation and Genomic Architecture Changes in Azospirillum Ludovic Vial, Céline Lavire, Patrick Mavingui, Didier Blaha, Jacqueline Haurat, Yvan Moënne-Loccoz, René Bally, and Florence Wisniewski-Dyé PMCID: PMC1540028 Insights in the glycosylation steps during biosynthesis of the antitumor anthracycline cosmomycin: characterization of two glycosyltransferase genes Leandro M. Garrido, Felipe Lombó, Irfan Baig, Mohammad Nur-e-Alam, Renata L. A. Furlan, Charlotte C. Borda, Alfredo Braña, Carmen Méndez, José A. Salas, Jürgen Rohr, and Gabriel Padilla PMCID: PMC2879347 Published in final edited form as: Appl Microbiol Biotechnol. 2006 November; 73(1): 122–131. Published online 2006 June 30. doi: 10.1007/s00253-006-0453-z. Biosynthetic Gene Cluster for the Polyenoyltetramic Acid α-Lipomycin C. Bihlmaier, E. Welle, C. Hofmann, K. Welzel, A. Vente, E. Breitling, M. Müller, S. Glaser, and A. Bechthold PMCID: PMC1479109 Detailed Genomic Analysis of the Wβ and γ Phages Infecting Bacillus anthracis: Implications for Evolution of Environmental Fitness and Antibiotic Resistance Raymond Schuch and Vincent A. Fischetti PMCID: PMC1446989 Gene Cloning and Molecular Characterization of an Extracellular Poly(l-Lactic Acid) Depolymerase from Amycolatopsis sp. Strain K104-1 Emiko Matsuda, Naoki Abe, Hideyuki Tamakawa, Jun Kaneko, and Yoshiyuki Kamio PMCID: PMC1272983 Gene Cluster Responsible for Validamycin Biosynthesis in Streptomyces hygroscopicus subsp. jinggangensis 5008 Yi Yu, Linquan Bai, Kazuyuki Minagawa, Xiaohong Jian, Lei Li, Jialiang Li, Shuangya Chen, Erhu Cao, Taifo Mahmud, Heinz G. Floss, Xiufen Zhou, and Zixin Deng PMCID: PMC1214664 Sequence Diversity and Antigenic Variation at the rag Locus of Porphyromonas gingivalis Lucinda M. C. Hall, Stuart C. Fawell, Xiaoju Shi, Marie-Claire Faray-Kele, Joseph Aduse-Opoku, Robert A. Whiley, and Michael A. Curtis PMCID: PMC1168617 Expression of the melC Operon in Several Streptomyces Strains Is Positively Regulated by AdpA, an AraC Family Transcriptional Regulator Involved in Morphological Development in Streptomyces coelicolor Dongqing Zhu, Xinyi He, Xiufen Zhou, and Zixin Deng PMCID: PMC1082821 Expression of ccaR, Encoding the Positive Activator of Cephamycin C and Clavulanic Acid Production in Streptomyces clavuligerus, Is Dependent on bldG Dawn R. D. Bignell, Kapil Tahlan, Kimberley R. Colvin, Susan E. Jensen, and Brenda K. Leskiw PMCID: PMC1068620 Transcriptional Control by A-Factor of Two Trypsin Genes in Streptomyces griseus Jun-ya Kato, Won-Jae Chi, Yasuo Ohnishi, Soon-Kwang Hong, and Sueharu Horinouchi PMCID: PMC538825 The complete genomic sequence of Nocardia farcinica IFM 10152 Jun Ishikawa, Atsushi Yamashita, Yuzuru Mikami, Yasutaka Hoshino, Haruyo Kurita, Kunimoto Hotta, Tadayoshi Shiba, and Masahira Hattori PMCID: PMC522048
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