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Selection in the evolution of gene duplications
Fyodor A Kondrashov, Igor B Rogozin, Yuri I Wolf, Eugene V Koonin
Genome Biol. 2002; 3(2): research0008.1–research0008.9. Published online 2002 January 14.
PMCID:
PMC65685
Abstract Full Text PDF–562K Supplementary Material
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 Is Cited by the Following 75 Articles in this Archive:
Selection for Higher Gene Copy Number after Different Types of Plant Gene Duplications
Corey M. Hudson, Emily E. Puckett, Michaël Bekaert, J. Chris Pires, Gavin C. Conant
Genome Biol Evol. 2011; 3: 1369–1380. Published online 2011 November 4. doi: 10.1093/gbe/evr115
PMCID:
PMC3240960
Abstract Full Text PDF–502K
Local synteny and codon usage contribute to asymmetric sequence divergence of Saccharomyces cerevisiae gene duplicates
Lijing Bu, Ulfar Bergthorsson, Vaishali Katju
BMC Evol Biol. 2011; 11: 279. Published online 2011 September 28. doi: 10.1186/1471-2148-11-279
PMCID:
PMC3190396
Abstract Full Text PDF–543K Supplementary Material
A Computational Study of Elongation Factor G (EFG) Duplicated Genes: Diverged Nature Underlying the Innovation on the Same Structural Template
Tõnu Margus, Maido Remm, Tanel Tenson
PLoS One. 2011; 6(8): e22789. Published online 2011 August 4. doi: 10.1371/journal.pone.0022789
PMCID:
PMC3150367
Abstract Full Text PDF–4.1M Supplementary Material
Testis-specific glyceraldehyde-3-phosphate dehydrogenase: origin and evolution
Mikhail L Kuravsky, Vladimir V Aleshin, Dmitrij Frishman, Vladimir I Muronetz
BMC Evol Biol. 2011; 11: 160. Published online 2011 June 10. doi: 10.1186/1471-2148-11-160
PMCID:
PMC3224139
Abstract Full Text PDF–1.2M Supplementary Material
Evidence of association between Nucleosome Occupancy and the Evolution of Transcription Factor Binding Sites in Yeast
Krishna BS Swamy, Wen-Yi Chu, Chun-Yi Wang, Huai-Kuang Tsai, Daryi Wang
BMC Evol Biol. 2011; 11: 150. Published online 2011 May 31. doi: 10.1186/1471-2148-11-150
PMCID:
PMC3124427
Abstract Full Text PDF–573K Supplementary Material
The evolutionary history of the SAL1 gene family in eutherian mammals
Camille Meslin, Fanny Brimau, Patricia Nagnan-Le Meillour, Isabelle Callebaut, Géraldine Pascal, Philippe Monget
BMC Evol Biol. 2011; 11: 148. Published online 2011 May 28. doi: 10.1186/1471-2148-11-148
PMCID:
PMC3128046
Abstract Full Text PDF–4.5M Supplementary Material
Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins
Chrysanthi Ainali, Michelle Simon, Shiri Freilich, Octavio Espinosa, Lee Hazelwood, Sophia Tsoka, Christos A Ouzounis, John M Hancock
BMC Evol Biol. 2011; 11: 142. Published online 2011 May 25. doi: 10.1186/1471-2148-11-142
PMCID:
PMC3112093
Abstract Full Text PDF–705K Supplementary Material
A Case-by-Case Evolutionary Analysis of Four Imprinted Retrogenes
Ruth B McCole, Noeleen B Loughran, Mandeep Chahal, Luis P Fernandes, Roland G Roberts, Franca Fraternali, Mary J O'Connell, Rebecca J Oakey
Evolution. 2011 May; 65(5): 1413–1427. doi: 10.1111/j.1558-5646.2010.01213.x
PMCID:
PMC3107425
Abstract Full Text PDF–662K Supplementary Material
FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens
Rupanjali Chaudhuri, Faraz Alam Ansari, Muthukurussi Varieth Raghunandanan, Srinivasan Ramachandran
BMC Genomics. 2011; 12: 192. Published online 2011 April 15. doi: 10.1186/1471-2164-12-192
PMCID:
PMC3224177
Abstract Full Text PDF–1.7M Supplementary Material
Expression level, cellular compartment and metabolic network position all influence the average selective constraint on mammalian enzymes
Corey M Hudson, Gavin C Conant
BMC Evol Biol. 2011; 11: 89. Published online 2011 April 6. doi: 10.1186/1471-2148-11-89
PMCID:
PMC3082228
Abstract Full Text PDF–1.3M Supplementary Material
Phylogenetic Analysis of Kindlins Suggests Subfunctionalization of an Ancestral Unduplicated Kindlin into Three Paralogs in Vertebrates
Ammad Aslam Khan, Axel Janke, Takashi Shimokawa, Hongquan Zhang
Evol Bioinform Online. 2011; 7: 7–19. Published online 2011 March 22. doi: 10.4137/EBO.S6179
PMCID:
PMC3072626
Abstract Full Text PDF–628K
Genome-wide identification and evolution of ATP-binding cassette transporters in the ciliate Tetrahymena thermophila: A case of functional divergence in a multigene family
Jie Xiong, Lifang Feng, Dongxia Yuan, Chengjie Fu, Wei Miao
BMC Evol Biol. 2010; 10: 330. Published online 2010 October 27. doi: 10.1186/1471-2148-10-330
PMCID:
PMC2984421
Abstract Full Text PDF–4.4M Supplementary Material
Asymmetric and non-uniform evolution of recently duplicated human genes
Alexander Y Panchin, Mikhail S Gelfand, Vasily E Ramensky, Irena I Artamonova
Biol Direct. 2010; 5: 54. Published online 2010 September 8. doi: 10.1186/1745-6150-5-54
PMCID:
PMC2942815
Abstract Full Text PDF–502K
Noncoding Sequences Near Duplicated Genes Evolve Rapidly
Dennis Kostka, Matthew W. Hahn, Katherine S. Pollard
Genome Biol Evol. 2010; 2: 518–533. Published online 2010 July 2. doi: 10.1093/gbe/evq037
PMCID:
PMC2942038
Abstract Full Text PDF–384K
Rapid Diversification of Cell Signaling Phenotypes by Modular Domain Recombination
Sergio G. Peisajovich, Joan E. Garbarino, Ping Wei, Wendell A. Lim
Science. Author manuscript; available in PMC 2010 November 8.
Published in final edited form as: Science. 2010 April 16; 328(5976): 368–372. doi: 10.1126/science.1182376
PMCID:
PMC2975375
Abstract Full Text PDF–557K Supplementary Material
Gene Family Size Conservation Is a Good Indicator of Evolutionary Rates
Feng-Chi Chen, Chiuan-Jung Chen, Wen-Hsiung Li, Trees-Juen Chuang
Mol Biol Evol. 2010 August; 27(8): 1750–1758. Published online 2010 March 1. doi: 10.1093/molbev/msq055
PMCID:
PMC2908708
Abstract Full Text PDF–320K Supplementary Material
Increased Expression and Protein Divergence in Duplicate Genes Is Associated with Morphological Diversification
Kousuke Hanada, Takashi Kuromori, Fumiyoshi Myouga, Tetsuro Toyoda, Kazuo Shinozaki
PLoS Genet. 2009 December; 5(12): e1000781. Published online 2009 December 24. doi: 10.1371/journal.pgen.1000781
PMCID:
PMC2788128
Abstract Full Text PDF–222K Supplementary Material
Gene socialization: gene order, GC content and gene silencing in Salmonella
Nikolas Papanikolaou, Kalliopi Trachana, Theodosios Theodosiou, Vasilis J Promponas, Ioannis Iliopoulos
BMC Genomics. 2009; 10: 597. Published online 2009 December 11. doi: 10.1186/1471-2164-10-597
PMCID:
PMC2801525
Abstract Full Text PDF–544K Supplementary Material
Expansion of tandem repeats in sea anemone Nematostella vectensis proteome: A source for gene novelty?
Guy Naamati, Menachem Fromer, Michal Linial
BMC Genomics. 2009; 10: 593. Published online 2009 December 10. doi: 10.1186/1471-2164-10-593
PMCID:
PMC2805694
Abstract Full Text PDF–764K Supplementary Material
Genome-Wide Transcriptome Analyses of Silicon Metabolism in Phaeodactylum tricornutum Reveal the Multilevel Regulation of Silicic Acid Transporters
Guillaume Sapriel, Michelle Quinet, Marc Heijde, Laurent Jourdren, Véronique Tanty, Guangzuo Luo, Stéphane Le Crom, Pascal Jean Lopez
PLoS One. 2009; 4(10): e7458. Published online 2009 October 14. doi: 10.1371/journal.pone.0007458
PMCID:
PMC2758714
Abstract Full Text PDF–1.5M Supplementary Material
Does negative auto-regulation increase gene duplicability?
Tobias Warnecke, Guang-Zhong Wang, Martin J Lercher, Laurence D Hurst
BMC Evol Biol. 2009; 9: 193. Published online 2009 August 7. doi: 10.1186/1471-2148-9-193
PMCID:
PMC2739200
Abstract Full Text PDF–302K Supplementary Material
Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate
Yu Xia, Eric A. Franzosa, Mark B. Gerstein
PLoS Comput Biol. 2009 June; 5(6): e1000413. Published online 2009 June 12. doi: 10.1371/journal.pcbi.1000413
PMCID:
PMC2688033
Abstract Full Text PDF–523K Supplementary Material
Evolution and Functional Diversification of the GLI Family of Transcription Factors in Vertebrates
Amir Ali Abbasi, Debbie K. Goode, Saneela Amir, Karl-Heinz Grzeschik
Evol Bioinform Online. 2009; 5: 5–13. Published online 2009 May 18.
PMCID:
PMC2747127
Abstract Full Text PDF–511K
Phylogeny and evolution of Rab7 and Rab9 proteins
Paweł Mackiewicz, Elżbieta Wyroba
BMC Evol Biol. 2009; 9: 101. Published online 2009 May 14. doi: 10.1186/1471-2148-9-101
PMCID:
PMC2693434
Abstract Full Text PDF–1.9M Supplementary Material
Adaptive evolution of young gene duplicates in mammals
Mira V. Han, Jeffery P. Demuth, Casey L. McGrath, Claudio Casola, Matthew W. Hahn
Genome Res. 2009 May; 19(5): 859–867. doi: 10.1101/gr.085951.108
PMCID:
PMC2675974
Abstract Full Text PDF–223K
The apoptotic machinery as a biological complex system: analysis of its omics and evolution, identification of candidate genes for fourteen major types of cancer, and experimental validation in CML and neuroblastoma
Cinzia Di Pietro, Marco Ragusa, Davide Barbagallo, Laura R Duro, Maria R Guglielmino, Alessandra Majorana, Rosario Angelica, Marina Scalia, Luisa Statello, Loredana Salito, Luisa Tomasello, Salvo Pernagallo, Salvo Valenti, Vito D'Agostino, Patrizio Triberio, Igor Tandurella, Giuseppe A Palumbo, Piera La Cava, Viviana Cafiso, Taschia Bertuccio, Maria Santagati, Giovanni Li Destri, Salvatore Lanzafame, Francesco Di Raimondo, Stefania Stefani, Bud Mishra, Michele Purrello
BMC Med Genomics. 2009; 2: 20. Published online 2009 April 30. doi: 10.1186/1755-8794-2-20
PMCID:
PMC2683874
Abstract Full Text PDF–8.2M Supplementary Material
Identification and Gene Expression Analysis of a Taxonomically Restricted Cysteine-Rich Protein Family in Reef-Building Corals
Shinichi Sunagawa, Michael K. DeSalvo, Christian R. Voolstra, Alejandro Reyes-Bermudez, Mónica Medina
PLoS ONE. 2009; 4(3): e4865. Published online 2009 March 13. doi: 10.1371/journal.pone.0004865
PMCID:
PMC2652719
Abstract Full Text PDF–298K Supplementary Material
Emergence, development and diversification of the TGF-β signalling pathway within the animal kingdom
Lukasz Huminiecki, Leon Goldovsky, Shiri Freilich, Aristidis Moustakas, Christos Ouzounis, Carl-Henrik Heldin
BMC Evol Biol. 2009; 9: 28. Published online 2009 February 3. doi: 10.1186/1471-2148-9-28
PMCID:
PMC2657120
Abstract Full Text PDF–1011K Supplementary Material
Duplication and Gene Conversion in the Drosophila melanogaster Genome
Naoki Osada, Hideki Innan
PLoS Genet. 2008 December; 4(12): e1000305. Published online 2008 December 12. doi: 10.1371/journal.pgen.1000305
PMCID:
PMC2588116
Abstract Full Text PDF–409K Supplementary Material
Syntenator: Multiple gene order alignments with a gene-specific scoring function
Christian Rödelsperger, Christoph Dieterich
Algorithms Mol Biol. 2008; 3: 14. Published online 2008 November 6. doi: 10.1186/1748-7188-3-14
PMCID:
PMC2590594
Abstract Full Text PDF–404K Supplementary Material
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