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The process of genome shrinkage in the obligate symbiont Buchnera aphidicola
Nancy A Moran, Alex Mira
Genome Biol. 2001; 2(12): research0054.1–research0054.12. Published online 2001 November 14.
PMCID:
PMC64839
Abstract Full Text PDF–209K

Is Cited by the Following 36 Articles in this Archive:

Repeated, Selection-Driven Genome Reduction of Accessory Genes in Experimental Populations
Ming-Chun Lee, Christopher J. Marx
PLoS Genet. 2012 May; 8(5): e1002651. Published online 2012 May 10. doi: 10.1371/journal.pgen.1002651
PMCID:
PMC3349727
Abstract Full Text PDF–1.5M Supplementary Material
Metabolic Networks of Sodalis glossinidius: A Systems Biology Approach to Reductive Evolution
Eugeni Belda, Francisco J. Silva, Juli Peretó, Andrés Moya
PLoS One. 2012; 7(1): e30652. Published online 2012 January 24. doi: 10.1371/journal.pone.0030652
PMCID:
PMC3265509
Abstract Full Text PDF–828K Supplementary Material
Sequence Conservation and Functional Constraint on Intergenic Spacers in Reduced Genomes of the Obligate Symbiont Buchnera
Patrick H. Degnan, Howard Ochman, Nancy A. Moran
PLoS Genet. 2011 September; 7(9): e1002252. Published online 2011 September 1. doi: 10.1371/journal.pgen.1002252
PMCID:
PMC3164680
Abstract Full Text PDF–551K Supplementary Material
Gene Loss and Parallel Evolution Contribute to Species Difference in Flower Color
Stacey D. Smith, Mark D. Rausher
Mol Biol Evol. 2011 October; 28(10): 2799–2810. Published online 2011 May 6. doi: 10.1093/molbev/msr109
PMCID:
PMC3203625
Free in PMC on 2012/10/01
Genome Reduction by Deletion of Paralogs in the Marine Cyanobacterium Prochlorococcus
Haiwei Luo, Robert Friedman, Jijun Tang, Austin L. Hughes
Mol Biol Evol. 2011 October; 28(10): 2751–2760. Published online 2011 April 29. doi: 10.1093/molbev/msr081
PMCID:
PMC3203624
Free in PMC on 2012/10/01
Metabolic modeling of endosymbiont genome reduction on a temporal scale
Keren Yizhak, Tamir Tuller, Balázs Papp, Eytan Ruppin
Mol Syst Biol. 2011; 7: 479. Published online 2011 March 29. doi: 10.1038/msb.2011.11
PMCID:
PMC3094061
Abstract Full Text PDF–903K Supplementary Material
Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpreting Novel, Deep Branches in Marker Gene Phylogenetic Trees
Dongying Wu, Martin Wu, Aaron Halpern, Douglas B. Rusch, Shibu Yooseph, Marvin Frazier, J. Craig Venter, Jonathan A. Eisen
PLoS One. 2011; 6(3): e18011. Published online 2011 March 18. doi: 10.1371/journal.pone.0018011
PMCID:
PMC3060911
Abstract Full Text PDF–775K
Loss of Genetic Redundancy in Reductive Genome Evolution
André G. Mendonça, Renato J. Alves, José B. Pereira-Leal
PLoS Comput Biol. 2011 February; 7(2): e1001082. Published online 2011 February 17. doi: 10.1371/journal.pcbi.1001082
PMCID:
PMC3040653
Abstract Full Text PDF–798K Supplementary Material
Defining Pathogenic Bacterial Species in the Genomic Era
Kalliopi Georgiades, Didier Raoult
Front Microbiol. 2010; 1: 151. Published online 2011 January 17. doi: 10.3389/fmicb.2010.00151
PMCID:
PMC3109419
Abstract Full Text PDF–2.3M
Genome-Wide Influence of Indel Substitutions on Evolution of Bacteria of the PVC Superphylum, Revealed Using a Novel Computational Method
Olga K. Kamneva, David A. Liberles, Naomi L. Ward
Genome Biol Evol. 2010; 2: 870–886. Published online 2010 November 3. doi: 10.1093/gbe/evq071
PMCID:
PMC3000692
Abstract Full Text PDF–1.0M
Mobile genetic element proliferation and gene inactivation impact over the genome structure and metabolic capabilities of Sodalis glossinidius, the secondary endosymbiont of tsetse flies
Eugeni Belda, Andrés Moya, Stephen Bentley, Francisco J Silva
BMC Genomics. 2010; 11: 449. Published online 2010 July 22. doi: 10.1186/1471-2164-11-449
PMCID:
PMC3091646
Abstract Full Text PDF–1.1M Supplementary Material
The Early Stage of Bacterial Genome-Reductive Evolution in the Host
Han Song, Junghyun Hwang, Hyojeong Yi, Ricky L. Ulrich, Yan Yu, William C. Nierman, Heenam Stanley Kim
PLoS Pathog. 2010 May; 6(5): e1000922. Published online 2010 May 27. doi: 10.1371/journal.ppat.1000922
PMCID:
PMC2877748
Abstract Full Text PDF–1.1M Supplementary Material
Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics
Luis David Alcaraz, Gabriel Moreno-Hagelsieb, Luis E Eguiarte, Valeria Souza, Luis Herrera-Estrella, Gabriela Olmedo
BMC Genomics. 2010; 11: 332. Published online 2010 May 26. doi: 10.1186/1471-2164-11-332
PMCID:
PMC2890564
Abstract Full Text PDF–1.7M Supplementary Material
Deletional Bias across the Three Domains of Life
Chih-Horng Kuo, Howard Ochman
Genome Biol Evol. 2009; 1: 145–152. Published online 2009 June 27. doi: 10.1093/gbe/evp016
PMCID:
PMC2817411
Abstract Full Text PDF–144K Supplementary Material
Massive comparative genomic analysis reveals convergent evolution of specialized bacteria
Vicky Merhej, Manuela Royer-Carenzi, Pierre Pontarotti, Didier Raoult
Biol Direct. 2009; 4: 13. Published online 2009 April 10. doi: 10.1186/1745-6150-4-13
PMCID:
PMC2688493
Abstract Full Text PDF–4.3M Supplementary Material
Topological Signatures of Species Interactions in Metabolic Networks
Elhanan Borenstein, Marcus W. Feldman
J Comput Biol. 2009 February; 16(2): 191–200. doi: 10.1089/cmb.2008.06TT
PMCID:
PMC3035845
Abstract Full Text PDF–388K
Complex chloroplast RNA metabolism: just debugging the genetic programme?
Uwe G Maier, Andrew Bozarth, Helena T Funk, Stefan Zauner, Stefan A Rensing, Christian Schmitz-Linneweber, Thomas Börner, Michael Tillich
BMC Biol. 2008; 6: 36. Published online 2008 August 28. doi: 10.1186/1741-7007-6-36
PMCID:
PMC2553071
Abstract Full Text PDF–371K
The cyanobacterial endosymbiont of the unicellular algae Rhopalodia gibba shows reductive genome evolution
Christoph Kneip, Christine Voβ, Peter J Lockhart, Uwe G Maier
BMC Evol Biol. 2008; 8: 30. Published online 2008 January 28. doi: 10.1186/1471-2148-8-30
PMCID:
PMC2246100
Abstract Full Text PDF–1.6M Supplementary Material
Analysis of gene order data supports vertical inheritance of the leukotoxin operon and genome rearrangements in the 5' flanking region in genus Mannheimia
Jesper Larsen, Peter Kuhnert, Joachim Frey, Henrik Christensen, Magne Bisgaard, John E Olsen
BMC Evol Biol. 2007; 7: 184. Published online 2007 October 3. doi: 10.1186/1471-2148-7-184
PMCID:
PMC2228313
Abstract Full Text PDF–353K
Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of Buchnera aphidicola
José Viñuelas, Federica Calevro, Didier Remond, Jacques Bernillon, Yvan Rahbé, Gérard Febvay, Jean-Michel Fayard, Hubert Charles
BMC Genomics. 2007; 8: 143. Published online 2007 June 4. doi: 10.1186/1471-2164-8-143
PMCID:
PMC1899503
Abstract Full Text PDF–887K Supplementary Material
Stripped-down DNA repair in a highly reduced parasite
Erin E Gill, Naomi M Fast
BMC Mol Biol. 2007; 8: 24. Published online 2007 March 20. doi: 10.1186/1471-2199-8-24
PMCID:
PMC1851970
Abstract Full Text PDF–371K
A global gene evolution analysis on Vibrionaceae family using phylogenetic profile
Nicola Vitulo, Alessandro Vezzi, Chiara Romualdi, Stefano Campanaro, Giorgio Valle
BMC Bioinformatics. 2007; 8(Suppl 1): S23. Published online 2007 March 8. doi: 10.1186/1471-2105-8-S1-S23
PMCID:
PMC1885853
Abstract Full Text PDF–3.7M
Reductive Genome Evolution from the Mother of Rickettsia
Guillaume Blanc, Hiroyuki Ogata, Catherine Robert, Stéphane Audic, Karsten Suhre, Guy Vestris, Jean-Michel Claverie, Didier Raoult
PLoS Genet. 2007 January; 3(1): e14. Published online 2007 January 19. doi: 10.1371/journal.pgen.0030014
PMCID:
PMC1779305
Abstract Full Text PDF–590K Supplementary Material
Data mining for proteins characteristic of clades
Marshall Bern, David Goldberg, Eugenia Lyashenko
Nucleic Acids Res. 2006 September; 34(16): 4342–4353. Published online 2006 August 26. doi: 10.1093/nar/gkl440
PMCID:
PMC1636346
Abstract Full Text PDF–258K
Tempo and mode of early gene loss in endosymbiotic bacteria from insects
F Delmotte, C Rispe, J Schaber, FJ Silva, A Moya
BMC Evol Biol. 2006; 6: 56. Published online 2006 July 18. doi: 10.1186/1471-2148-6-56
PMCID:
PMC1544356
Abstract Full Text PDF–373K
Phylogenomic analysis of the GIY-YIG nuclease superfamily
Stanislaw Dunin-Horkawicz, Marcin Feder, Janusz M Bujnicki
BMC Genomics. 2006; 7: 98. Published online 2006 April 28. doi: 10.1186/1471-2164-7-98
PMCID:
PMC1564403
Abstract Full Text PDF–3.5M Supplementary Material
Compositional discordance between prokaryotic plasmids and host chromosomes
Mark WJ van Passel, Aldert Bart, Angela CM Luyf, Antoine HC van Kampen, Arie van der Ende
BMC Genomics. 2006; 7: 26. Published online 2006 February 15. doi: 10.1186/1471-2164-7-26
PMCID:
PMC1382213
Abstract Full Text PDF–449K Supplementary Material
Exploration of phylogenetic data using a global sequence analysis method
Charles Chapus, Christine Dufraigne, Scott Edwards, Alain Giron, Bernard Fertil, Patrick Deschavanne
BMC Evol Biol. 2005; 5: 63. Published online 2005 November 9. doi: 10.1186/1471-2148-5-63
PMCID:
PMC1310607
Abstract Full Text PDF–2.7M
Bacterial genome size reduction by experimental evolution
A. I. Nilsson, S. Koskiniemi, S. Eriksson, E. Kugelberg, J. C. D. Hinton, D. I. Andersson
Proc Natl Acad Sci U S A. 2005 August 23; 102(34): 12112–12116. Published online 2005 August 12. doi: 10.1073/pnas.0503654102
PMCID:
PMC1189319
Abstract Full Text PDF–361K
Regulation of Transcription in a Reduced Bacterial Genome: Nutrient-Provisioning Genes of the Obligate Symbiont Buchnera aphidicola
Nancy A. Moran, Helen E. Dunbar, Jennifer L. Wilcox
J Bacteriol. 2005 June; 187(12): 4229–4237. doi: 10.1128/JB.187.12.4229-4237.2005
PMCID:
PMC1151715
Abstract Full Text PDF–830K
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