My NCBISign In
Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application
Cheng Li, Wing Hung Wong
Genome Biol. 2001; 2(8): research0032.1–research0032.11. Published online 2001 August 3.
PMCID:
PMC55329
Abstract Full Text PDF–1.1M

Is Cited by the Following 152 Articles in this Archive:

Plasticity of Adult Human Pancreatic Duct Cells by Neurogenin3-Mediated Reprogramming
Nathalie Swales, Geert A. Martens, Stefan Bonné, Yves Heremans, Rehannah Borup, Mark Van de Casteele, Zhidong Ling, Daniel Pipeleers, Philippe Ravassard, Finn Nielsen, Jorge Ferrer, Harry Heimberg
PLoS One. 2012; 7(5): e37055. Published online 2012 May 14. doi: 10.1371/journal.pone.0037055
PMCID:
PMC3351393
Abstract Full Text PDF–652K Supplementary Material
Spatiotemporal expression profiling of proteins in rat sciatic nerve regeneration using reverse phase protein arrays
David J Bryan, C Robert Litchfield, Jeffrey V Manchio, Tanya Logvinenko, Antonia H Holway, John Austin, Ian C Summerhayes, Kimberly M Rieger-Christ
Proteome Sci. 2012; 10: 9. Published online 2012 February 10. doi: 10.1186/1477-5956-10-9
PMCID:
PMC3295716
Abstract Full Text PDF–650K Supplementary Material
Preservation of Ranking Order in the Expression of Human Housekeeping Genes
Grace T. W. Shaw, Edward S. C. Shih, Chun-Houh Chen, Ming-Jing Hwang
PLoS One. 2011; 6(12): e29314. Published online 2011 December 22. doi: 10.1371/journal.pone.0029314
PMCID:
PMC3245260
Abstract Full Text PDF–680K Supplementary Material
Loss of the retinoblastoma binding protein 2 (RBP2) histone demethylase suppresses tumorigenesis in mice lacking Rb1 or Men1
Wenchu Lin, Jian Cao, Jiayun Liu, Michael L. Beshiri, Yuko Fujiwara, Joshua Francis, Andrew D. Cherniack, Christoph Geisen, Lauren P. Blair, Mike R. Zou, Xiaohua Shen, Dan Kawamori, Zongzhi Liu, Chiara Grisanzio, Hideo Watanabe, Yoji Andrew Minamishima, Qing Zhang, Rohit N. Kulkarni, Sabina Signoretti, Scott J. Rodig, Roderick T. Bronson, Stuart H. Orkin, David P. Tuck, Elizaveta V. Benevolenskaya, Matthew Meyerson, William G. Kaelin, Jr, Qin Yan
Proc Natl Acad Sci U S A. 2011 August 16; 108(33): 13379–13386. Published online 2011 July 25. doi: 10.1073/pnas.1110104108
PMCID:
PMC3158206
Abstract Full Text PDF–1.8M Supplementary Material
p16INK4A Positively Regulates Cyclin D1 and E2F1 through Negative Control of AUF1
Huda H. Al-Khalaf, Dilek Colak, Maher Al-Saif, Albandary Al-Bakheet, Siti-Faujiah Hendrayani, Nujoud Al-Yousef, Namik Kaya, Khalid S. Khabar, Abdelilah Aboussekhra
PLoS One. 2011; 6(7): e21111. Published online 2011 July 20. doi: 10.1371/journal.pone.0021111
PMCID:
PMC3140473
Abstract Full Text PDF–1.3M
Idiopathic and heritable PAH perturb common molecular pathways, correlated with increased MSX1 expression
Eric D. Austin, Swapna Menon, Anna R. Hemnes, Linda R. Robinson, Megha Talati, Kelly L. Fox, Joy D. Cogan, Rizwan Hamid, Lora K. Hedges, Ivan Robbins, Kirk Lane, John H. Newman, James E. Loyd, James West
Pulm Circ. 2011 Jul-Sep; 1(3): 389–398. doi: 10.4103/2045-8932.87308
PMCID:
PMC3224431
Abstract Full Text
Snail and the miR-200 Family Act in Opposition to Regulate EMT and Germ Layer Fate Restriction in Differentiating ES Cells
Jennifer G. Gill, Ellen M. Langer, R. Coleman Lindsley, Mi Cai, Theresa L. Murphy, Michael Kyba, Kenneth M. Murphy
Stem Cells. Author manuscript; available in PMC 2012 April 30.
Published in final edited form as: Stem Cells. 2011 May; 29(5): 764–776. doi: 10.1002/stem.628
PMCID:
PMC3339404
Abstract Full Text PDF–2.3M Supplementary Material
GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers
Craig H Mermel, Steven E Schumacher, Barbara Hill, Matthew L Meyerson, Rameen Beroukhim, Gad Getz
Genome Biol. 2011; 12(4): R41. Published online 2011 April 28. doi: 10.1186/gb-2011-12-4-r41
PMCID:
PMC3218867
Abstract Full Text PDF–740K Supplementary Material
Accurate and exact CNV identification from targeted high-throughput sequence data
Alex S Nord, Ming Lee, Mary-Claire King, Tom Walsh
BMC Genomics. 2011; 12: 184. Published online 2011 April 12. doi: 10.1186/1471-2164-12-184
PMCID:
PMC3088570
Abstract Full Text PDF–1.8M Supplementary Material
Microarray Analysis Uncovers a Role for Tip60 in Nervous System Function and General Metabolism
Meridith Lorbeck, Keerthy Pirooznia, Jessica Sarthi, Xianmin Zhu, Felice Elefant
PLoS One. 2011; 6(4): e18412. Published online 2011 April 11. doi: 10.1371/journal.pone.0018412
PMCID:
PMC3073973
Abstract Full Text PDF–1.5M Supplementary Material
Activation of Interferon Signaling Pathways in Spinal Cord Astrocytes from an ALS Mouse Model
RENGANG WANG, BO YANG, DONGXIAN ZHANG
Glia. Author manuscript; available in PMC 2012 June 1.
Published in final edited form as: Glia. 2011 June; 59(6): 946–958. Published online 2011 March 28. doi: 10.1002/glia.21167
PMCID:
PMC3077460
Free in PMC on 2012/06/01
Lifespan extension and paraquat resistance in a ubiquinone-deficient Escherichia coli mutant depend on transcription factors ArcA and TdcA
Stavros Gonidakis, Steven E. Finkel, Valter D. Longo
Aging (Albany NY) 2011 March; 3(3): 291–303. Published online 2011 March 21.
PMCID:
PMC3091522
Abstract Full Text PDF–1.7M Supplementary Material
The unfolded protein response transducer IRE1α prevents ER stress-induced hepatic steatosis
Kezhong Zhang, Shiyu Wang, Jyoti Malhotra, Justin R Hassler, Sung Hoon Back, Guohui Wang, Lin Chang, Wenbo Xu, Hongzhi Miao, Roberta Leonardi, Y Eugene Chen, Suzanne Jackowski, Randal J Kaufman
EMBO J. 2011 April 6; 30(7): 1357–1375. Published online 2011 March 15. doi: 10.1038/emboj.2011.52
PMCID:
PMC3094110
Abstract Full Text PDF–2.2M Supplementary Material
Dynamic Changes in the MicroRNA Expression Profile Reveal Multiple Regulatory Mechanisms in the Spinal Nerve Ligation Model of Neuropathic Pain
David von Schack, Michael J. Agostino, B. Stuart Murray, Yizheng Li, Padmalatha S. Reddy, Jin Chen, Sung E. Choe, Brian W. Strassle, Christine Li, Brian Bates, Lynn Zhang, Huijuan Hu, Smita Kotnis, Brendan Bingham, Wei Liu, Garth T. Whiteside, Tarek A. Samad, Jeffrey D. Kennedy, Seena K. Ajit
PLoS One. 2011; 6(3): e17670. Published online 2011 March 14. doi: 10.1371/journal.pone.0017670
PMCID:
PMC3056716
Abstract Full Text PDF–523K Supplementary Material
Microarray Analysis of Differential Gene Expression Profile in Peripheral Blood Cells of Patients with Human Essential Hypertension
Melvin T. Korkor, Fan Bo Meng, Shen Yang Xing, Mu Chun Zhang, Jin Rui Guo, Xiao Xue Zhu, Ping Yang
Int J Med Sci. 2011; 8(2): 168–179. Published online 2011 February 27.
PMCID:
PMC3047082
Abstract Full Text PDF–1.0M
Attenuation of human neutrophil migration and function by uropathogenic bacteria
Jennifer A. Loughman, David A. Hunstad
Microbes Infect. Author manuscript; available in PMC 2012 June 1.
Published in final edited form as: Microbes Infect. 2011 June; 13(6): 555–565. Published online 2011 February 19. doi: 10.1016/j.micinf.2011.01.017
PMCID:
PMC3092803
Free in PMC on 2012/06/01
Whole Genome Analysis of Gene Expression Reveals Coordinated Activation of Signaling and Metabolic Pathways during Pollen-Pistil Interactions in Arabidopsis
Leonor C. Boavida, Filipe Borges, Jörg D. Becker, José A. Feijó
Plant Physiol. 2011 April; 155(4): 2066–2080. Published online 2011 February 11. doi: 10.1104/pp.110.169813
PMCID:
PMC3091125
Abstract Full Text PDF–1.1M
Geminin cooperates with Polycomb to restrain multi-lineage commitment in the early embryo
Jong-Won Lim, Pamela Hummert, Jason C. Mills, Kristen L. Kroll
Development. 2011 January 1; 138(1): 33–44. doi: 10.1242/dev.059824
PMCID:
PMC2998164
Abstract Full Text Supplementary Material
High IGF-IR activity in triple-negative breast cancer cell lines and tumorgrafts correlates with sensitivity to anti-IGF-IR therapy
Beate C. Litzenburger, Chad J. Creighton, Anna Tsimelzon, Bonita T. Chan, Susan G. Hilsenbeck, Tao Wang, Joan M. Carboni, Marco M. Gottardis, Fei Huang, Jenny C. Chang, Michael T. Lewis, Mothaffar F. Rimawi, Adrian V. Lee
Clin Cancer Res. Author manuscript; available in PMC 2012 April 15.
Published in final edited form as: Clin Cancer Res. 2011 April 15; 17(8): 2314–2327. Published online 2010 December 22. doi: 10.1158/1078-0432.CCR-10-1903
PMCID:
PMC3073089
Abstract Full Text PDF–4.4M Supplementary Material
G1 arrest and differentiation can occur independently of Rb family function
Stacey E. Wirt, Adam S. Adler, Véronique Gebala, James M. Weimann, Bethany E. Schaffer, Louis A. Saddic, Patrick Viatour, Hannes Vogel, Howard Y. Chang, Alex Meissner, Julien Sage
J Cell Biol. 2010 November 15; 191(4): 809–825. doi: 10.1083/jcb.201003048
PMCID:
PMC2983066
Abstract Full Text PDF–4.5M Supplementary Material
Requirement of the Epithelium-specific Ets Transcription Factor Spdef for Mucous Gland Cell Function in the Gastric Antrum
David Horst, Xuesong Gu, Manoj Bhasin, Quanli Yang, Michael Verzi, Dongxu Lin, Marie Joseph, Xiaobo Zhang, Wei Chen, Yi-Ping Li, Ramesh A. Shivdasani, Towia A. Libermann
J Biol Chem. 2010 November 5; 285(45): 35047–35055. Published online 2010 August 26. doi: 10.1074/jbc.M110.164541
PMCID:
PMC2966119
Abstract Full Text Supplementary Material
A maternal low protein diet has pronounced effects on mitochondrial gene expression in offspring liver and skeletal muscle; protective effect of taurine
Ole Hartvig Mortensen, Hanne Lodberg Olsen, Lis Frandsen, Peter Eigil Nielsen, Finn Cilius Nielsen, Niels Grunnet, Bjørn Quistorff
J Biomed Sci. 2010; 17(Suppl 1): S38. Published online 2010 August 24. doi: 10.1186/1423-0127-17-S1-S38
PMCID:
PMC2994375
Abstract Full Text PDF–478K Supplementary Material
Genetic sphingosine kinase 1 deficiency significantly decreases synovial inflammation and joint erosions in murine TNFα-induced arthritis
DeAnna A. Baker, Jeremy Barth, Raymond Chang, Lina M. Obeid, Gary S. Gilkeson
J Immunol. Author manuscript; available in PMC 2010 September 20.
Published in final edited form as: J Immunol. 2010 August 15; 185(4): 2570–2579. Published online 2010 July 19. doi: 10.4049/jimmunol.1000644
PMCID:
PMC2942019
Abstract Full Text PDF–1.3M
GliomaPredict: a clinically useful tool for assigning glioma patients to specific molecular subtypes
Aiguo Li, Serdar Bozdag, Yuri Kotliarov, Howard A Fine
BMC Med Inform Decis Mak. 2010; 10: 38. Published online 2010 July 15. doi: 10.1186/1472-6947-10-38
PMCID:
PMC2912783
Abstract Full Text PDF–457K Supplementary Material
Gene Expression Profiles of Beta-Cell Enriched Tissue Obtained by Laser Capture Microdissection from Subjects with Type 2 Diabetes
Lorella Marselli, Jeffrey Thorne, Sonika Dahiya, Dennis C. Sgroi, Arun Sharma, Susan Bonner-Weir, Piero Marchetti, Gordon C. Weir
PLoS One. 2010; 5(7): e11499. Published online 2010 July 13. doi: 10.1371/journal.pone.0011499
PMCID:
PMC2903480
Abstract Full Text PDF–667K Supplementary Material
Cooperation between myogenic regulatory factors and SIX family transcription factors is important for myoblast differentiation
Yubing Liu, Alphonse Chu, Imane Chakroun, Uzma Islam, Alexandre Blais
Nucleic Acids Res. 2010 November; 38(20): 6857–6871. Published online 2010 July 2. doi: 10.1093/nar/gkq585
PMCID:
PMC2978361
Abstract Full Text PDF–846K Supplementary Material
Absence of functional TolC protein causes increased stress response gene expression in Sinorhizobium meliloti
Mário R Santos, Ana M Cosme, Jörg D Becker, João MC Medeiros, Márcia F Mata, Leonilde M Moreira
BMC Microbiol. 2010; 10: 180. Published online 2010 June 23. doi: 10.1186/1471-2180-10-180
PMCID:
PMC2912261
Abstract Full Text PDF–1.1M Supplementary Material
Pathway Analysis Software: Annotation Errors and Solutions
Nicole K. Henderson-MacLennan, Jeanette C. Papp, C. Conover Talbot, Jr., Edward R.B. McCabe, Angela P. Presson
Mol Genet Metab. Author manuscript; available in PMC 2011 October 1.
Published in final edited form as: Mol Genet Metab. 2010 Oct–Nov; 101(2-3): 134–140. Published online 2010 June 22. doi: 10.1016/j.ymgme.2010.06.005
PMCID:
PMC2950253
Abstract Full Text PDF–826K
Integrative and comparative genomics analysis of early hepatocellular carcinoma differentiated from liver regeneration in young and old
Dilek Colak, Muhammad A Chishti, Al-Bandary Al-Bakheet, Ahmed Al-Qahtani, Mohamed M Shoukri, Malcolm H Goyns, Pinar T Ozand, John Quackenbush, Ben H Park, Namik Kaya
Mol Cancer. 2010; 9: 146. Published online 2010 June 12. doi: 10.1186/1476-4598-9-146
PMCID:
PMC2898705
Abstract Full Text PDF–2.1M Supplementary Material
Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
Qianqian Zhu, Jeffrey C Miecznikowski, Marc S Halfon
BMC Bioinformatics. 2010; 11: 285. Published online 2010 May 27. doi: 10.1186/1471-2105-11-285
PMCID:
PMC2897828
Abstract Full Text PDF–5.1M Supplementary Material
You are here: NCBI > Literature > PubMed Central (PMC)
Write to the Help Desk