Cited by ..

Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application

Cheng Li, Wing Hung Wong

Genome Biol. 2001; 2(8): research0032.1–research0032.11. Published online 2001 August 3.

PMCID:: PMC55329

Abstract Full Text PDF–1.1M

Is Cited by the Following 143 Articles in this Archive:

Preservation of Ranking Order in the Expression of Human Housekeeping Genes

Grace T. W. Shaw, Edward S. C. Shih, Chun-Houh Chen, Ming-Jing Hwang

PLoS One. 2011; 6(12): e29314. Published online 2011 December 22. doi: 10.1371/journal.pone.0029314

PMCID:: PMC3245260

Abstract Full Text PDF–680K Supplementary Material

p16^INK4A Positively Regulates Cyclin D1 and E2F1 through Negative Control of AUF1

Huda H. Al-Khalaf, Dilek Colak, Maher Al-Saif, Albandary Al-Bakheet, Siti-Faujiah Hendrayani, Nujoud Al-Yousef, Namik Kaya, Khalid S. Khabar, Abdelilah Aboussekhra

PLoS One. 2011; 6(7): e21111. Published online 2011 July 20. doi: 10.1371/journal.pone.0021111

PMCID:: PMC3140473

Abstract Full Text PDF–1.3M

Idiopathic and heritable PAH perturb common molecular pathways, correlated with increased MSX1 expression

Eric D. Austin, Swapna Menon, Anna R. Hemnes, Linda R. Robinson, Megha Talati, Kelly L. Fox, Joy D. Cogan, Rizwan Hamid, Lora K. Hedges, Ivan Robbins, Kirk Lane, John H. Newman, James E. Loyd, James West

Pulm Circ. 2011 Jul-Sep; 1(3): 389–398. doi: 10.4103/2045-8932.87308

PMCID:: PMC3224431

Abstract Full Text

GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers

Craig H Mermel, Steven E Schumacher, Barbara Hill, Matthew L Meyerson, Rameen Beroukhim, Gad Getz

Genome Biol. 2011; 12(4): R41. Published online 2011 April 28. doi: 10.1186/gb-2011-12-4-r41

PMCID:: PMC3218867

Abstract Full Text PDF–740K Supplementary Material

Accurate and exact CNV identification from targeted high-throughput sequence data

Alex S Nord, Ming Lee, Mary-Claire King, Tom Walsh

BMC Genomics. 2011; 12: 184. Published online 2011 April 12. doi: 10.1186/1471-2164-12-184

PMCID:: PMC3088570

Abstract Full Text PDF–1.8M Supplementary Material

Microarray Analysis Uncovers a Role for Tip60 in Nervous System Function and General Metabolism

Meridith Lorbeck, Keerthy Pirooznia, Jessica Sarthi, Xianmin Zhu, Felice Elefant

PLoS One. 2011; 6(4): e18412. Published online 2011 April 11. doi: 10.1371/journal.pone.0018412

PMCID:: PMC3073973

Abstract Full Text PDF–1.5M Supplementary Material

Lifespan extension and paraquat resistance in a ubiquinone-deficient Escherichia coli mutant depend on transcription factors ArcA and TdcA

Stavros Gonidakis, Steven E. Finkel, Valter D. Longo

Aging (Albany NY) 2011 March; 3(3): 291–303. Published online 2011 March 21.

PMCID:: PMC3091522

Abstract Full Text PDF–1.7M Supplementary Material

Dynamic Changes in the MicroRNA Expression Profile Reveal Multiple Regulatory Mechanisms in the Spinal Nerve Ligation Model of Neuropathic Pain

David von Schack, Michael J. Agostino, B. Stuart Murray, Yizheng Li, Padmalatha S. Reddy, Jin Chen, Sung E. Choe, Brian W. Strassle, Christine Li, Brian Bates, Lynn Zhang, Huijuan Hu, Smita Kotnis, Brendan Bingham, Wei Liu, Garth T. Whiteside, Tarek A. Samad, Jeffrey D. Kennedy, Seena K. Ajit

PLoS One. 2011; 6(3): e17670. Published online 2011 March 14. doi: 10.1371/journal.pone.0017670

PMCID:: PMC3056716

Abstract Full Text PDF–523K Supplementary Material

Microarray Analysis of Differential Gene Expression Profile in Peripheral Blood Cells of Patients with Human Essential Hypertension

Melvin T. Korkor, Fan Bo Meng, Shen Yang Xing, Mu Chun Zhang, Jin Rui Guo, Xiao Xue Zhu, Ping Yang

Int J Med Sci. 2011; 8(2): 168–179. Published online 2011 February 27.

PMCID:: PMC3047082

Abstract Full Text PDF–1.0M

Geminin cooperates with Polycomb to restrain multi-lineage commitment in the early embryo

Jong-Won Lim, Pamela Hummert, Jason C. Mills, Kristen L. Kroll

Development. 2011 January 1; 138(1): 33–44. doi: 10.1242/dev.059824

PMCID:: PMC2998164

Abstract Full Text Supplementary Material

G1 arrest and differentiation can occur independently of Rb family function

Stacey E. Wirt, Adam S. Adler, Véronique Gebala, James M. Weimann, Bethany E. Schaffer, Louis A. Saddic, Patrick Viatour, Hannes Vogel, Howard Y. Chang, Alex Meissner, Julien Sage

J Cell Biol. 2010 November 15; 191(4): 809–825. doi: 10.1083/jcb.201003048

PMCID:: PMC2983066

Abstract Full Text PDF–4.5M Supplementary Material

Requirement of the Epithelium-specific Ets Transcription Factor Spdef for Mucous Gland Cell Function in the Gastric Antrum

David Horst, Xuesong Gu, Manoj Bhasin, Quanli Yang, Michael Verzi, Dongxu Lin, Marie Joseph, Xiaobo Zhang, Wei Chen, Yi-Ping Li, Ramesh A. Shivdasani, Towia A. Libermann

J Biol Chem. 2010 November 5; 285(45): 35047–35055. Published online 2010 August 26. doi: 10.1074/jbc.M110.164541

PMCID:: PMC2966119

Abstract Full Text Supplementary Material

A maternal low protein diet has pronounced effects on mitochondrial gene expression in offspring liver and skeletal muscle; protective effect of taurine

Ole Hartvig Mortensen, Hanne Lodberg Olsen, Lis Frandsen, Peter Eigil Nielsen, Finn Cilius Nielsen, Niels Grunnet, Bjørn Quistorff

J Biomed Sci. 2010; 17(Suppl 1): S38. Published online 2010 August 24. doi: 10.1186/1423-0127-17-S1-S38

PMCID:: PMC2994375

Abstract Full Text PDF–478K Supplementary Material

Genetic sphingosine kinase 1 deficiency significantly decreases synovial inflammation and joint erosions in murine TNFα-induced arthritis

DeAnna A. Baker, Jeremy Barth, Raymond Chang, Lina M. Obeid, Gary S. Gilkeson

J Immunol. Author manuscript; available in PMC 2010 September 20.

Published in final edited form as: J Immunol. 2010 August 15; 185(4): 2570–2579. Published online 2010 July 19. doi: 10.4049/jimmunol.1000644

PMCID:: PMC2942019

Abstract Full Text PDF–1.3M

GliomaPredict: a clinically useful tool for assigning glioma patients to specific molecular subtypes

Aiguo Li, Serdar Bozdag, Yuri Kotliarov, Howard A Fine

BMC Med Inform Decis Mak. 2010; 10: 38. Published online 2010 July 15. doi: 10.1186/1472-6947-10-38

PMCID:: PMC2912783

Abstract Full Text PDF–457K Supplementary Material

Gene Expression Profiles of Beta-Cell Enriched Tissue Obtained by Laser Capture Microdissection from Subjects with Type 2 Diabetes

Lorella Marselli, Jeffrey Thorne, Sonika Dahiya, Dennis C. Sgroi, Arun Sharma, Susan Bonner-Weir, Piero Marchetti, Gordon C. Weir

PLoS One. 2010; 5(7): e11499. Published online 2010 July 13. doi: 10.1371/journal.pone.0011499

PMCID:: PMC2903480

Abstract Full Text PDF–667K Supplementary Material

Cooperation between myogenic regulatory factors and SIX family transcription factors is important for myoblast differentiation

Yubing Liu, Alphonse Chu, Imane Chakroun, Uzma Islam, Alexandre Blais

Nucleic Acids Res. 2010 November; 38(20): 6857–6871. Published online 2010 July 2. doi: 10.1093/nar/gkq585

PMCID:: PMC2978361

Abstract Full Text PDF–846K Supplementary Material

Absence of functional TolC protein causes increased stress response gene expression in Sinorhizobium meliloti

Mário R Santos, Ana M Cosme, Jörg D Becker, João MC Medeiros, Márcia F Mata, Leonilde M Moreira

BMC Microbiol. 2010; 10: 180. Published online 2010 June 23. doi: 10.1186/1471-2180-10-180

PMCID:: PMC2912261

Abstract Full Text PDF–1.1M Supplementary Material

Pathway Analysis Software: Annotation Errors and Solutions

Nicole K. Henderson-MacLennan, Jeanette C. Papp, C. Conover Talbot, Jr., Edward R.B. McCabe, Angela P. Presson

Mol Genet Metab. Author manuscript; available in PMC 2011 October 1.

Published in final edited form as: Mol Genet Metab. 2010 Oct–Nov; 101(2-3): 134–140. Published online 2010 June 22. doi: 10.1016/j.ymgme.2010.06.005

PMCID:: PMC2950253

Abstract Full Text PDF–826K

Integrative and comparative genomics analysis of early hepatocellular carcinoma differentiated from liver regeneration in young and old

Dilek Colak, Muhammad A Chishti, Al-Bandary Al-Bakheet, Ahmed Al-Qahtani, Mohamed M Shoukri, Malcolm H Goyns, Pinar T Ozand, John Quackenbush, Ben H Park, Namik Kaya

Mol Cancer. 2010; 9: 146. Published online 2010 June 12. doi: 10.1186/1476-4598-9-146

PMCID:: PMC2898705

Abstract Full Text PDF–2.1M Supplementary Material

Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset

Qianqian Zhu, Jeffrey C Miecznikowski, Marc S Halfon

BMC Bioinformatics. 2010; 11: 285. Published online 2010 May 27. doi: 10.1186/1471-2105-11-285

PMCID:: PMC2897828

Abstract Full Text PDF–5.1M Supplementary Material

High-resolution profiling of the LEDGF/p75 chromatin interaction in the ENCODE region

Jan De Rijck, Koen Bartholomeeusen, Hugo Ceulemans, Zeger Debyser, Rik Gijsbers

Nucleic Acids Res. 2010 October; 38(18): 6135–6147. Published online 2010 May 19. doi: 10.1093/nar/gkq410

PMCID:: PMC2952859

Abstract Full Text PDF–4.3M Supplementary Material

Peripheral CD103⁺ dendritic cells form a unified subset developmentally related to CD8α⁺ conventional dendritic cells

Brian T. Edelson, Wumesh KC, Richard Juang, Masako Kohyama, Loralyn A. Benoit, Paul A. Klekotka, Clara Moon, Jörn C. Albring, Wataru Ise, Drew G. Michael, Deepta Bhattacharya, Thaddeus S. Stappenbeck, Michael J. Holtzman, Sun-Sang J. Sung, Theresa L. Murphy, Kai Hildner, Kenneth M. Murphy

J Exp Med. 2010 April 12; 207(4): 823–836. doi: 10.1084/jem.20091627

PMCID:: PMC2856032

Abstract Full Text PDF–2.9M Supplementary Material

Novel Proteins Regulated by mTOR in Subependymal Giant Cell Astrocytomas of Patients with Tuberous Sclerosis Complex and New Therapeutic Implications

Magdalena Ewa Tyburczy, Katarzyna Kotulska, Piotr Pokarowski, Jakub Mieczkowski, Joanna Kucharska, Wieslawa Grajkowska, Maciej Roszkowski, Sergiusz Jozwiak, Bozena Kaminska

Am J Pathol. 2010 April; 176(4): 1878–1890. doi: 10.2353/ajpath.2010.090950

PMCID:: PMC2843477

Abstract Full Text PDF–1.1M

Network Modeling Identifies Molecular Functions Targeted by miR-204 to Suppress Head and Neck Tumor Metastasis

Younghee Lee, Xinan Yang, Yong Huang, Hanli Fan, Qingbei Zhang, Youngfei Wu, Jianrong Li, Rifat Hasina, Chao Cheng, Mark W. Lingen, Mark B. Gerstein, Ralph R. Weichselbaum, H. Rosie Xing, Yves A. Lussier

PLoS Comput Biol. 2010 April; 6(4): e1000730. Published online 2010 April 1. doi: 10.1371/journal.pcbi.1000730

PMCID:: PMC2848541

Abstract Full Text PDF–2.2M Supplementary Material

Proliferation and Pluripotency of Human Embryonic Stem Cells Maintained on Type I Collagen

Meredith B. Jones, Chia H. Chu, James C. Pendleton, Michael J. Betenbaugh, Joseph Shiloach, Bolormaa Baljinnyam, Jeffrey S. Rubin, Michael J. Shamblott

Stem Cells Dev. 2010 December; 19(12): 1923–1935. Published online 2010 April 1. doi: 10.1089/scd.2009.0326