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Microarray-based resequencing of multiple Bacillus anthracis isolates
Michael E Zwick, Farrell Mcafee, David J Cutler, Timothy D Read, Jacques Ravel, Gregory R Bowman, Darrell R Galloway, Alfred Mateczun
Genome Biol. 2005; 6(1): R10. Published online 2004 December 17. doi: 10.1186/gb-2004-6-1-r10
PMCID:
PMC549062
Abstract Full Text PDF–355K Supplementary Material

Is Cited by the Following 22 Articles in this Archive:

Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event
Tanya Golubchik, Angela B. Brueggemann, Teresa Street, Robert E. Gertz, Jr., Chris C. A. Spencer, Thien Ho, Eleni Giannoulatou, Ruth Link-Gelles, Rosalind M. Harding, Bernard Beall, Tim E. A. Peto, Matthew R. Moore, Peter Donnelly, Derrick W. Crook, Rory Bowden
Nat Genet. Author manuscript; available in PMC 2012 July 29.
Published in final edited form as: Nat Genet. 2012 January 29; 44(3): 352–355. doi: 10.1038/ng.1072
PMCID:
PMC3303117
Free in PMC on 2012/07/29
Genetic variation and linkage disequilibrium in Bacillus anthracis
Michael E. Zwick, Maureen Kiley Thomason, Peter E. Chen, Henry R. Johnson, Shanmuga Sozhamannan, Alfred Mateczun, Timothy D. Read
Sci Rep. 2011; 1: 169. Published online 2011 November 24. doi: 10.1038/srep00169
PMCID:
PMC3240990
Abstract Full Text PDF–463K Supplementary Material
Recombination and Population Structure in Salmonella enterica
Xavier Didelot, Rory Bowden, Teresa Street, Tanya Golubchik, Chris Spencer, Gil McVean, Vartul Sangal, Muna F. Anjum, Mark Achtman, Daniel Falush, Peter Donnelly
PLoS Genet. 2011 July; 7(7): e1002191. Published online 2011 July 28. doi: 10.1371/journal.pgen.1002191
PMCID:
PMC3145606
Abstract Full Text PDF–695K Supplementary Material
Evaluation of Second-Generation Sequencing of 19 Dilated Cardiomyopathy Genes for Clinical Applications
Sivakumar Gowrisankar, Jordan P. Lerner-Ellis, Stephanie Cox, Emily T. White, Megan Manion, Kevin LeVan, Jonathan Liu, Lisa M. Farwell, Oleg Iartchouk, Heidi L. Rehm, Birgit H. Funke
J Mol Diagn. 2010 November; 12(6): 818–827. doi: 10.2353/jmoldx.2010.100014
PMCID:
PMC2963910
Abstract Full Text PDF–588K Supplementary Material
A novel custom resequencing array for dilated cardiomyopathy
Rebekah S. Zimmerman, Stephanie Cox, Neal K. Lakdawala, Allison Cirino, Debora Mancini-DiNardo, Eugene Clark, Annette Leon, Elizabeth Duffy, Emily White, Samantha Baxter, Manal Alaamery, Lisa Farwell, Scott Weiss, Christine E. Seidman, Jonathan G. Seidman, Carolyn Y. Ho, Heidi L. Rehm, Birgit H. Funke
Genet Med. Author manuscript; available in PMC 2011 January 11.
Published in final edited form as: Genet Med. 2010 May; 12(5): 268–278.
PMCID:
PMC3018746
Abstract Full Text PDF–100K Supplementary Material
Empirical Evaluation of Oligonucleotide Probe Selection for DNA Microarrays
Jennifer G. Mulle, Viren C. Patel, Stephen T. Warren, Madhuri R. Hegde, David J. Cutler, Michael E. Zwick
PLoS One. 2010; 5(3): e9921. Published online 2010 March 29. doi: 10.1371/journal.pone.0009921
PMCID:
PMC2847945
Abstract Full Text PDF–243K Supplementary Material
Genomic characterization of the Yersinia genus
Peter E Chen, Christopher Cook, Andrew C Stewart, Niranjan Nagarajan, Dan D Sommer, Mihai Pop, Brendan Thomason, Maureen P Kiley Thomason, Shannon Lentz, Nichole Nolan, Shanmuga Sozhamannan, Alexander Sulakvelidze, Alfred Mateczun, Lei Du, Michael E Zwick, Timothy D Read
Genome Biol. 2010; 11(1): R1. Published online 2010 January 4. doi: 10.1186/gb-2010-11-1-r1
PMCID:
PMC2847712
Abstract Full Text PDF–1.5M Supplementary Material
Genotyping of Bacillus cereus Strains by Microarray-Based Resequencing
Michael E. Zwick, Maureen P. Kiley, Andrew C. Stewart, Alfred Mateczun, Timothy D. Read
PLoS ONE. 2008; 3(7): e2513. Published online 2008 July 2. doi: 10.1371/journal.pone.0002513
PMCID:
PMC2438477
Abstract Full Text PDF–295K Supplementary Material
Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: Focus on point miscalls and artefactual expansions
Mark J Mandel, Eric V Stabb, Edward G Ruby
BMC Genomics. 2008; 9: 138. Published online 2008 March 25. doi: 10.1186/1471-2164-9-138
PMCID:
PMC2330054
Abstract Full Text PDF–467K Supplementary Material
A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip® whole-genome resequencing platform
Gagan A. Pandya, Michael H. Holmes, Sirisha Sunkara, Andrew Sparks, Yun Bai, Kathleen Verratti, Kelly Saeed, Pratap Venepally, Behnam Jarrahi, Robert D. Fleischmann, Scott N. Peterson
Nucleic Acids Res. 2007 December; 35(21): e148. Published online 2007 December. doi: 10.1093/nar/gkm918
PMCID:
PMC2175352
Abstract Full Text PDF–2.7M Supplementary Material
Persistent Infection and Promiscuous Recombination of Multiple Genotypes of an RNA Virus within a Single Host Generate Extensive Diversity
Ziming Weng, Roger Barthelson, Siddarame Gowda, Mark E. Hilf, William O. Dawson, David W. Galbraith, Zhongguo Xiong
PLoS ONE. 2007; 2(9): e917. Published online 2007 September 19. doi: 10.1371/journal.pone.0000917
PMCID:
PMC1975466
Abstract Full Text PDF–370K Supplementary Material
An evaluation of Comparative Genome Sequencing (CGS) by comparing two previously-sequenced bacterial genomes
Christopher D Herring, Bernhard Ø Palsson
BMC Genomics. 2007; 8: 274. Published online 2007 August 14. doi: 10.1186/1471-2164-8-274
PMCID:
PMC2072959
Abstract Full Text PDF–272K Supplementary Material
GeneChip Resequencing of the Smallpox Virus Genome Can Identify Novel Strains: a Biodefense Application
Irshad M. Sulaiman, Kevin Tang, John Osborne, Scott Sammons, Robert M. Wohlhueter
J Clin Microbiol. 2007 February; 45(2): 358–363. Published online 2006 December 20. doi: 10.1128/JCM.01848-06
PMCID:
PMC1829075
Abstract Full Text PDF–63K
Operon Prediction for Sequenced Bacterial Genomes without Experimental Information
Nicholas H. Bergman, Karla D. Passalacqua, Philip C. Hanna, Zhaohui S. Qin
Appl Environ Microbiol. 2007 February; 73(3): 846–854. Published online 2006 November 22. doi: 10.1128/AEM.01686-06
PMCID:
PMC1800777
Abstract Full Text PDF–288K Supplementary Material
Automated identification of multiple micro-organisms from resequencing DNA microarrays
Anthony P. Malanoski, Baochuan Lin, Zheng Wang, Joel M. Schnur, David A. Stenger
Nucleic Acids Res. 2006 October; 34(18): 5300–5311. Published online 2006 September 29. doi: 10.1093/nar/gkl565
PMCID:
PMC1636417
Abstract Full Text PDF–1.1M Supplementary Material
Genome Rearrangements, Deletions, and Amplifications in the Natural Population of Bartonella henselae
Hillevi Lindroos, Olga Vinnere, Alex Mira, Dirk Repsilber, Kristina Näslund, Siv G. E. Andersson
J Bacteriol. 2006 November; 188(21): 7426–7439. Published online 2006 August 25. doi: 10.1128/JB.00472-06
PMCID:
PMC1636255
Abstract Full Text PDF–758K
Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms
Wei Zhang, Weihong Qi, Thomas J. Albert, Alifiya S. Motiwala, David Alland, Eija K. Hyytia-Trees, Efrain M. Ribot, Patricia I. Fields, Thomas S. Whittam, Bala Swaminathan
Genome Res. 2006 June; 16(6): 757–767. doi: 10.1101/gr.4759706
PMCID:
PMC1473186
Abstract Full Text PDF–468K
Identifying Influenza Viruses with Resequencing Microarrays
Zheng Wang, Luke T. Daum, Gary J. Vora, David Metzgar, Elizabeth A. Walter, Linda C. Canas, Anthony P. Malanoski, Baochuan Lin, David A. Stenger
Emerg Infect Dis. 2006 April; 12(4): 638–646. doi: 10.3201/eid1204.051441
PMCID:
PMC3294710
Abstract Full Text PDF–285K
Identification of Frequent Chromosome Copy-Number Polymorphisms by Use of High-Resolution Single-Nucleotide–Polymorphism Arrays
Michael  Wirtenberger, Kari  Hemminki, Barbara  Burwinkel
Am J Hum Genet. 2006 March; 78(3): 520–522.
PMCID:
PMC1380295
Full Text PDF–267K Supplementary Material
Single-Nucleotide Repeat Analysis for Subtyping Bacillus anthracis Isolates
Chad W. Stratilo, Christopher T. Lewis, Louis Bryden, Michael R. Mulvey, Doug Bader
J Clin Microbiol. 2006 March; 44(3): 777–782. doi: 10.1128/JCM.44.3.777-782.2006
PMCID:
PMC1393151
Abstract Full Text PDF–68K
Evaluation of Affymetrix Severe Acute Respiratory Syndrome Resequencing GeneChips in Characterization of the Genomes of Two Strains of Coronavirus Infecting Humans
Irshad M. Sulaiman, Xin Liu, Michael Frace, Nikhat Sulaiman, Melissa Olsen-Rasmussen, Elizabeth Neuhaus, Paul A. Rota, Robert M. Wohlhueter
Appl Environ Microbiol. 2006 January; 72(1): 207–211. doi: 10.1128/AEM.72.1.207-211.2006
PMCID:
PMC1352236
Abstract Full Text PDF–167K
A low-cost open-source SNP genotyping platform for association mapping applications
Stuart J Macdonald, Tomi Pastinen, Anne Genissel, Theodore W Cornforth, Anthony D Long
Genome Biol. 2005; 6(12): R105. Published online 2005 December 2. doi: 10.1186/gb-2005-6-12-r105
PMCID:
PMC1414086
Abstract Full Text PDF–2.2M Supplementary Material
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