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Alan M Moses, Derek Y Chiang, Daniel A Pollard, Venky N Iyer, Michael B Eisen
Genome Biol. 2004; 5(12): R98. Published online 2004 November 30. doi: 10.1186/gb-2004-5-12-r98
PMCID:
PMC545801
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 Is Cited by the Following 56 Articles in this Archive:
Armita Nourmohammad, Michael Lässig
PLoS Comput Biol. 2011 October; 7(10): e1002167. Published online 2011 October 6. doi: 10.1371/journal.pcbi.1002167
PMCID:
PMC3188502
Andrej Fischer, Chris Greenman, Ville Mustonen
Genetics. 2011 June; 188(2): 383–393. doi: 10.1534/genetics.111.127480
PMCID:
PMC3122307
David S. Lawrie, Dmitri A. Petrov, Philipp W. Messer
Genome Biol Evol. 2011; 3: 383–395. Published online 2011 April 17. doi: 10.1093/gbe/evr032
PMCID:
PMC3101017
Georg Fuellen, Stephan Struckmann
Biol Direct. 2010; 5: 67. Published online 2010 December 29. doi: 10.1186/1745-6150-5-67
PMCID:
PMC3024949
Melissa J. Hubisz, Katherine S. Pollard, Adam Siepel
Brief Bioinform. 2011 January; 12(1): 41–51. Published online 2010 December 21. doi: 10.1093/bib/bbq072
PMCID:
PMC3030812
Jing Su, Sarah A. Teichmann, Thomas A. Down
PLoS Comput Biol. 2010 December; 6(12): e1001020. Published online 2010 December 2. doi: 10.1371/journal.pcbi.1001020
PMCID:
PMC2996316
Hervé Rouault, Khalil Mazouni, Lydie Couturier, Vincent Hakim, François Schweisguth
Proc Natl Acad Sci U S A. 2010 August 17; 107(33): 14615–14620. Published online 2010 July 29. doi: 10.1073/pnas.1002876107
PMCID:
PMC2930411
Michael M. Hoffman, Ewan Birney
Genome Res. 2010 May; 20(5): 685–692. doi: 10.1101/gr.096719.109
PMCID:
PMC2860170
Michael J. Palumbo, Lee A. Newberg
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W268–W274. Published online 2010 April 30. doi: 10.1093/nar/gkq330
PMCID:
PMC2896078
Xiang Zhou, Pavel Sumazin, Presha Rajbhandari, Andrea Califano
PLoS One. 2010; 5(3): e9878. Published online 2010 March 26. doi: 10.1371/journal.pone.0009878
PMCID:
PMC2845628
Fabian A. Buske, Mikael Bodén, Denis C. Bauer, Timothy L. Bailey
Bioinformatics. 2010 April 1; 26(7): 860–866. Published online 2010 February 10. doi: 10.1093/bioinformatics/btq049
PMCID:
PMC2844991
Katherine S. Pollard, Melissa J. Hubisz, Kate R. Rosenbloom, Adam Siepel
Genome Res. 2010 January; 20(1): 110–121. doi: 10.1101/gr.097857.109
PMCID:
PMC2798823
Margaret C. W. Ho, Holly Johnsen, Sara E. Goetz, Benjamin J. Schiller, Esther Bae, Diana A. Tran, Andrey S. Shur, John M. Allen, Christoph Rau, Welcome Bender, William W. Fisher, Susan E. Celniker, Robert A. Drewell
PLoS Genet. 2009 November; 5(11): e1000709. Published online 2009 November 6. doi: 10.1371/journal.pgen.1000709
PMCID:
PMC2763271
Krishna B. S. Swamy, Chung-Yi Cho, Sufeng Chiang, Zing Tsung-Yeh Tsai, Huai-Kuang Tsai
Nucleic Acids Res. 2009 November; 37(21): 6991–7001. Published online 2009 November. doi: 10.1093/nar/gkp743
PMCID:
PMC2790881
John Hawkins, Charles Grant, William Stafford Noble, Timothy L. Bailey
Bioinformatics. 2009 June 15; 25(12): i339–i347. Published online 2009 May 27. doi: 10.1093/bioinformatics/btp201
PMCID:
PMC2687955
Inna Dubchak, Alexander Poliakov, Andrey Kislyuk, Michael Brudno
Genome Res. 2009 April; 19(4): 682–689. doi: 10.1101/gr.081778.108
PMCID:
PMC2665786
Xin He, Xu Ling, Saurabh Sinha
PLoS Comput Biol. 2009 March; 5(3): e1000299. Published online 2009 March 13. doi: 10.1371/journal.pcbi.1000299
PMCID:
PMC2657044
Jaebum Kim, Xin He, Saurabh Sinha
PLoS Genet. 2009 January; 5(1): e1000330. Published online 2009 January 9. doi: 10.1371/journal.pgen.1000330
PMCID:
PMC2607023
Tom Whitington, Andrew C. Perkins, Timothy L. Bailey
Nucleic Acids Res. 2009 January; 37(1): 14–25. Published online 2009 January. doi: 10.1093/nar/gkn866
PMCID:
PMC2662491
Lee A. Newberg, Charles E. Lawrence
J Comput Biol. 2009 January; 16(1): 1–18. doi: 10.1089/cmb.2008.0137
PMCID:
PMC2858568
Xiaohui Xie, Paul Rigor, Pierre Baldi
Bioinformatics. 2009 January 15; 25(2): 167–174. Published online 2008 November 18. doi: 10.1093/bioinformatics/btn605
PMCID:
PMC2732295
Avinash Varadarajan, Robert K Bradley, Ian H Holmes
Genome Biol. 2008; 9(10): R147. Published online 2008 October 8. doi: 10.1186/gb-2008-9-10-r147
PMCID:
PMC2760874
Scott W. Doniger, Hyun Seok Kim, Devjanee Swain, Daniella Corcuera, Morgan Williams, Shiaw-Pyng Yang, Justin C. Fay
PLoS Genet. 2008 August; 4(8): e1000183. Published online 2008 August 29. doi: 10.1371/journal.pgen.1000183
PMCID:
PMC2515631
Lars Barquist, Ian Holmes
Nucleic Acids Res. 2008 July 1; 36(Web Server issue): W65–W69. Published online 2008 July 1. doi: 10.1093/nar/gkn283
PMCID:
PMC2447789
Lucas D. Ward, Harmen J. Bussemaker
Bioinformatics. 2008 July 1; 24(13): i165–i171. doi: 10.1093/bioinformatics/btn154
PMCID:
PMC2718632
Pradipta Ray, Suyash Shringarpure, Mladen Kolar, Eric P. Xing
PLoS Comput Biol. 2008 June; 4(6): e1000090. Published online 2008 June 6. doi: 10.1371/journal.pcbi.1000090
PMCID:
PMC2396503
Christof Francke, Robert Kerkhoven, Michiel Wels, Roland J Siezen
BMC Genomics. 2008; 9: 145. Published online 2008 March 27. doi: 10.1186/1471-2164-9-145
PMCID:
PMC2329647
Jason B. Warner, Anthony A. Philippakis, Savina A. Jaeger, Fangxue Sherry He, Jolinta Lin, Martha L. Bulyk
Nat Methods. Author manuscript; available in PMC 2009 July 10.
Published in final edited form as: Nat Methods. 2008 April; 5(4): 347–353. Published online 2008 March 2. doi: 10.1038/nmeth.1188
PMCID:
PMC2708972
Xiao-yong Li, Stewart MacArthur, Richard Bourgon, David Nix, Daniel A Pollard, Venky N Iyer, Aaron Hechmer, Lisa Simirenko, Mark Stapleton, Cris L. Luengo Hendriks, Hou Cheng Chu, Nobuo Ogawa, William Inwood, Victor Sementchenko, Amy Beaton, Richard Weiszmann, Susan E Celniker, David W Knowles, Tom Gingeras, Terence P Speed, Michael B Eisen, Mark D Biggin
PLoS Biol. 2008 February; 6(2): e27. Published online 2008 February 12. doi: 10.1371/journal.pbio.0060027
PMCID:
PMC2235902
Nacho Molina, Erik van Nimwegen
Genome Res. 2008 January; 18(1): 148–160. doi: 10.1101/gr.6759507
PMCID:
PMC2134783
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