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A Drosophila protein-interaction map centered on cell-cycle regulators
Clement A Stanyon, Guozhen Liu, Bernardo A Mangiola, Nishi Patel, Loic Giot, Bing Kuang, Huamei Zhang, Jinhui Zhong, Russell L Finley, Jr
Genome Biol. 2004; 5(12): R96. Published online 2004 November 26. doi: 10.1186/gb-2004-5-12-r96
PMCID:
PMC545799
Abstract Full Text PDF–1.2M Supplementary Material

Is Cited by the Following 48 Articles in this Archive:

Evolution of biological interaction networks: from models to real data
Mark GF Sun, Philip M Kim
Genome Biol. 2011; 12(12): 235. Published online 2011 December 28. doi: 10.1186/gb-2011-12-12-235
PMCID:
PMC3334609
Free in PMC on 2012/12/28
Modularity and hormone sensitivity of the Drosophila melanogaster insulin receptor/target of rapamycin interaction proteome
Timo Glatter, Ralf B Schittenhelm, Oliver Rinner, Katarzyna Roguska, Alexander Wepf, Martin A Jünger, Katja Köhler, Irena Jevtov, Hyungwon Choi, Alexander Schmidt, Alexey I Nesvizhskii, Hugo Stocker, Ernst Hafen, Ruedi Aebersold, Matthias Gstaiger
Mol Syst Biol. 2011; 7: 547. Published online 2011 November 8. doi: 10.1038/msb.2011.79
PMCID:
PMC3261712
Abstract Full Text PDF–1.8M Supplementary Material
A Protein Complex Network of Drosophila melanogaster
K. G. Guruharsha, J. -F. Rual, B. Zhai, J. Mintseris, P. Vaidya, N. Vaidya, C. Beekman, C. Wong, D. Y. Rhee, O. Cenaj, E. McKillip, S. Shah, M. Stapleton, K. H. Wan, C. Yu, B. Parsa, J. W. Carlson, X. Chen, B. Kapadia, K. VijayRaghavan, S. P. Gygi, S. E. Celniker, R. A. Obar, S. Artavanis-Tsakonas
Cell. Author manuscript; available in PMC 2012 October 28.
Published in final edited form as: Cell. 2011 October 28; 147(3): 690–703. doi: 10.1016/j.cell.2011.08.047
PMCID:
PMC3319048
Free in PMC on 2012/10/28
A densely overlapping gene fragmentation approach improves yeast two-hybrid screens for Plasmodium falciparum proteins
Hakeenah F. Brown, Ling Wang, Sudip Khadka, Stanley Fields, Douglas J. LaCount
Mol Biochem Parasitol. Author manuscript; available in PMC 2012 July 1.
Published in final edited form as: Mol Biochem Parasitol. 2011 Jul-Aug; 178(1-2): 56–59. Published online 2011 April 20. doi: 10.1016/j.molbiopara.2011.04.005
PMCID:
PMC3120127
Free in PMC on 2012/07/01
Assembling a Protein-Protein Interaction Map of the SSU Processome from Existing Datasets
Young H. Lim, J. Michael Charette, Susan J. Baserga
PLoS One. 2011; 6(3): e17701. Published online 2011 March 10. doi: 10.1371/journal.pone.0017701
PMCID:
PMC3053386
Abstract Full Text PDF–674K Supplementary Material
DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila
Thilakam Murali, Svetlana Pacifico, Jingkai Yu, Stephen Guest, George G. Roberts, III, Russell L. Finley, Jr
Nucleic Acids Res. 2011 January; 39(Database issue): D736–D743. Published online 2010 October 29. doi: 10.1093/nar/gkq1092
PMCID:
PMC3013689
Abstract Full Text PDF–5.7M
Protein-protein interaction map is a key gateway into liver regeneration
Chao Xie, Jin Gao, Run-Zhi Zhu, Yun-Sheng Yuan, Hong-Lin He, Qiu-Shi Huang, Wei Han, Yan Yu
World J Gastroenterol. 2010 July 28; 16(28): 3491–3498. Published online 2010 July 28. doi: 10.3748/wjg.v16.i28.3491
PMCID:
PMC2909548
Abstract Full Text PDF–1023K
Cyclin Y Is a Novel Conserved Cyclin Essential for Development in Drosophila
Dongmei Liu, Russell L. Finley, Jr.
Genetics. 2010 April; 184(4): 1025–1035. doi: 10.1534/genetics.110.114017
PMCID:
PMC2865905
Abstract Full Text PDF–2.3M
A genome-scale protein interaction profile of Drosophila p53 uncovers additional nodes of the human p53 network
Andrea Lunardi, Giulio Di Minin, Paolo Provero, Marco Dal Ferro, Marcello Carotti, Giannino Del Sal, Licio Collavin
Proc Natl Acad Sci U S A. 2010 April 6; 107(14): 6322–6327. Published online 2010 March 22. doi: 10.1073/pnas.1002447107
PMCID:
PMC2851947
Abstract Full Text PDF–1.0M Supplementary Material
Plant Protein-Protein Interaction Network and Interactome
Yixiang Zhang, Peng Gao, Joshua S Yuan
Curr Genomics. 2010 March; 11(1): 40–46. doi: 10.2174/138920210790218016
PMCID:
PMC2851115
Abstract Full Text PDF–286K
Reduced cul-5 Activity Causes Aberrant Follicular Morphogenesis and Germ Cell Loss in Drosophila Oogenesis
Jan-Michael Kugler, Christopher Lem, Paul Lasko
PLoS One. 2010; 5(2): e9048. Published online 2010 February 4. doi: 10.1371/journal.pone.0009048
PMCID:
PMC2816211
Abstract Full Text PDF–3.4M
Regulation of Drosophila Vasa In Vivo through Paralogous Cullin-RING E3 Ligase Specificity Receptors
Jan-Michael Kugler, Jae-Sung Woo, Byung-Ha Oh, Paul Lasko
Mol Cell Biol. 2010 April; 30(7): 1769–1782. Published online 2010 February 1. doi: 10.1128/MCB.01100-09
PMCID:
PMC2838069
Abstract Full Text PDF–3.1M Supplementary Material
Drosophila Translational Elongation Factor-1γ Is Modified in Response to DOA Kinase Activity and Is Essential for Cellular Viability
Yujie Fan, Michael Schlierf, Ana Cuervo Gaspar, Catherine Dreux, Arlette Kpebe, Linda Chaney, Aurelie Mathieu, Christophe Hitte, Olivier Grémy, Emeline Sarot, Mark Horn, Yunlong Zhao, Terri Goss Kinzy, Leonard Rabinow
Genetics. 2010 January; 184(1): 141–154. doi: 10.1534/genetics.109.109553
PMCID:
PMC2815912
Abstract Full Text PDF–2.1M
Cyclin-dependent kinases: a family portrait
Marcos Malumbres, Edward Harlow, Tim Hunt, Tony Hunter, Jill M. Lahti, Gerard Manning, David O. Morgan, Li-Huei Tsai, Debra J. Wolgemuth
Nat Cell Biol. Author manuscript; available in PMC 2010 August 2.
Published in final edited form as: Nat Cell Biol. 2009 November; 11(11): 1275–1276. doi: 10.1038/ncb1109-1275
PMCID:
PMC2914104
Full Text PDF–146K Supplementary Material
Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function
James C Costello, Mehmet M Dalkilic, Scott M Beason, Jeff R Gehlhausen, Rupali Patwardhan, Sumit Middha, Brian D Eads, Justen R Andrews
Genome Biol. 2009; 10(9): R97. Published online 2009 September 16. doi: 10.1186/gb-2009-10-9-r97
PMCID:
PMC2768986
Abstract Full Text PDF–2.6M Supplementary Material
Ontogeny and phylogeny: molecular signatures of selection, constraint, and temporal pleiotropy in the development of Drosophila
Carlo G Artieri, Wilfried Haerty, Rama S Singh
BMC Biol. 2009; 7: 42. Published online 2009 July 21. doi: 10.1186/1741-7007-7-42
PMCID:
PMC2722573
Abstract Full Text PDF–453K Supplementary Material
A complex-centric view of protein network evolution
Nir Yosef, Martin Kupiec, Eytan Ruppin, Roded Sharan
Nucleic Acids Res. 2009 July; 37(12): e88. Published online 2009 July. doi: 10.1093/nar/gkp414
PMCID:
PMC2709590
Abstract Full Text PDF–644K Supplementary Material
A Rice Kinase-Protein Interaction Map
Xiaodong Ding, Todd Richter, Mei Chen, Hiroaki Fujii, Young Su Seo, Mingtang Xie, Xianwu Zheng, Siddhartha Kanrar, Rebecca A. Stevenson, Christopher Dardick, Ying Li, Hao Jiang, Yan Zhang, Fahong Yu, Laura E. Bartley, Mawsheng Chern, Rebecca Bart, Xiuhua Chen, Lihuang Zhu, William G. Farmerie, Michael Gribskov, Jian-Kang Zhu, Michael E. Fromm, Pamela C. Ronald, Wen-Yuan Song
Plant Physiol. 2009 March; 149(3): 1478–1492. doi: 10.1104/pp.108.128298
PMCID:
PMC2649385
Abstract Full Text PDF–717K Supplementary Material
The development of an affinity evaluation and prediction system by using protein–protein docking simulations and parameter tuning
Koki Tsukamoto, Tatsuya Yoshikawa, Kiyonobu Yokota, Yuichiro Hourai, Kazuhiko Fukui
Adv Appl Bioinforma Chem. 2009; 2: 1–15. Published online 2009 January 12.
PMCID:
PMC3169950
Abstract Full Text PDF–1.2M
Cost effective strategies for completing the Interactome
Ariel S. Schwartz, Jingkai Yu, Kyle R. Gardenour, Russell L. Finley, Jr., Trey Ideker
Nat Methods. Author manuscript; available in PMC 2009 July 1.
Published in final edited form as: Nat Methods. 2009 January; 6(1): 55–61. Published online 2008 December 14. doi: 10.1038/nmeth.1283
PMCID:
PMC2613168
Abstract Full Text PDF–2.5M Supplementary Material
Combining multiple positive training sets to generate confidence scores for protein–protein interactions
Jingkai Yu, Russell L. Finley, Jr
Bioinformatics. 2009 January 1; 25(1): 105–111. Published online 2008 November 14. doi: 10.1093/bioinformatics/btn597
PMCID:
PMC2638943
Abstract Full Text PDF–256K Supplementary Material
Kinase-Inactivated ULK Proteins Inhibit Autophagy via Their Conserved C-Terminal Domains Using an Atg13-Independent Mechanism
Edmond Y. W. Chan, Andrea Longatti, Nicole C. McKnight, Sharon A. Tooze
Mol Cell Biol. 2009 January; 29(1): 157–171. Published online 2008 October 20. doi: 10.1128/MCB.01082-08
PMCID:
PMC2612494
Abstract Full Text PDF–2.7M
DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions
Jingkai Yu, Svetlana Pacifico, Guozhen Liu, Russell L Finley, Jr
BMC Genomics. 2008; 9: 461. Published online 2008 October 7. doi: 10.1186/1471-2164-9-461
PMCID:
PMC2572628
Abstract Full Text PDF–860K
Modification of Drosophila p53 by SUMO Modulates Its Transactivation and Pro-apoptotic Functions
Federico Mauri, Laura M. McNamee, Andrea Lunardi, Fulvio Chiacchiera, Giannino Del Sal, Michael H. Brodsky, Licio Collavin
J Biol Chem. 2008 July 25; 283(30): 20848–20856. doi: 10.1074/jbc.M710186200
PMCID:
PMC3258953
Abstract Full Text Supplementary Material
Unraveling Protein Networks with Power Graph Analysis
Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
PLoS Comput Biol. 2008 July; 4(7): e1000108. Published online 2008 July 11. doi: 10.1371/journal.pcbi.1000108
PMCID:
PMC2424176
Abstract Full Text PDF–2.4M
Natural Selection against Protein Aggregation on Self-Interacting and Essential Proteins in Yeast, Fly, and Worm
Yiwen Chen, Nikolay V. Dokholyan
Mol Biol Evol. 2008 August; 25(8): 1530–1533. Published online 2008 May 23. doi: 10.1093/molbev/msn122
PMCID:
PMC2727382
Abstract Full Text PDF–84K Supplementary Material
Defining a Modular Signalling Network from the Fly Interactome
Anaïs Baudot, Jean-Baptiste Angelelli, Alain Guénoche, Bernard Jacq, Christine Brun
BMC Syst Biol. 2008; 2: 45. Published online 2008 May 19. doi: 10.1186/1752-0509-2-45
PMCID:
PMC2405789
Abstract Full Text PDF–1.1M Supplementary Material
Estimating the size of the human interactome
Michael P. H. Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong Jun An, Michael Lappe, Carsten Wiuf
Proc Natl Acad Sci U S A. 2008 May 13; 105(19): 6959–6964. Published online 2008 May 12. doi: 10.1073/pnas.0708078105
PMCID:
PMC2383957
Abstract Full Text PDF–295K Supplementary Material
A Microtubule Interactome: Complexes with Roles in Cell Cycle and Mitosis
Julian R Hughes, Ana M Meireles, Katherine H Fisher, Angel Garcia, Philip R Antrobus, Alan Wainman, Nicole Zitzmann, Charlotte Deane, Hiroyuki Ohkura, James G Wakefield
PLoS Biol. 2008 April; 6(4): e98. Published online 2008 April 22. doi: 10.1371/journal.pbio.0060098
PMCID:
PMC2323305
Abstract Full Text PDF–620K Supplementary Material
Resolving the network of cell signaling pathways using the evolving yeast two-hybrid system
Vladimir Ratushny, Erica A. Golemis
Biotechniques. Author manuscript; available in PMC 2008 October 1.
Published in final edited form as: Biotechniques. 2008 April; 44(5): 655–662. doi: 10.2144/000112797
PMCID:
PMC2526548
Abstract Full Text PDF–303K
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