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Chromatin architecture and gene expression in Escherichia coli
Hanni Willenbrock, David W Ussery
Genome Biol. 2004; 5(12): 252. Published online 2004 December 1. doi: 10.1186/gb-2004-5-12-252
PMCID:
PMC545790
Abstract Full Text PDF–658K
 Is Cited by the Following 10 Articles in this Archive:
A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation
Miriam Fritsche, Songling Li, Dieter W. Heermann, Paul A. Wiggins
Nucleic Acids Res. 2012 February; 40(3): 972–980. Published online 2011 October 5. doi: 10.1093/nar/gkr779
PMCID:
PMC3273793
Abstract Full Text PDF–2.3M Supplementary Material
Modeling Three-Dimensional Chromosome Structures Using Gene Expression Data
Guanghua Xiao, Xinlei Wang, Arkady B. Khodursky
J Am Stat Assoc. Author manuscript; available in PMC 2011 July 12.
Published in final edited form as: J Am Stat Assoc. 2011 March; 106(493): 61–72. doi: 10.1198/jasa.2010.ap0950
PMCID:
PMC3134274
Abstract Full Text PDF–6.1M
Chromosomal periodicity and positional networks of genes in Escherichia coli
Anthony Mathelier, Alessandra Carbone
Mol Syst Biol. 2010; 6: 366. Published online 2010 May 11. doi: 10.1038/msb.2010.21
PMCID:
PMC2890325
Abstract Full Text PDF–944K Supplementary Material
Cyanobacterial psbA gene family: optimization of oxygenic photosynthesis
Paula Mulo, Cosmin Sicora, Eva-Mari Aro
Cell Mol Life Sci. 2009 December; 66(23): 3697–3710. Published online 2009 July 31. doi: 10.1007/s00018-009-0103-6
PMCID:
PMC2776144
Abstract Full Text PDF–385K
Regulation by transcription factors in bacteria: beyond description
Enrique Balleza, Lucia N López-Bojorquez, Agustino Martínez-Antonio, Osbaldo Resendis-Antonio, Irma Lozada-Chávez, Yalbi I Balderas-Martínez, Sergio Encarnación, Julio Collado-Vides
FEMS Microbiol Rev. 2009 January; 33(1): 133–151. Published online 2008 December. doi: 10.1111/j.1574-6976.2008.00145.x
PMCID:
PMC2704942
Abstract Full Text PDF–615K
Prediction of highly expressed genes in microbes based on chromatin accessibility
Hanni Willenbrock, David W Ussery
BMC Mol Biol. 2007; 8: 11. Published online 2007 February 13. doi: 10.1186/1471-2199-8-11
PMCID:
PMC1805505
Abstract Full Text PDF–549K Supplementary Material
B-DNA Under Stress: Over- and Untwisting of DNA during Molecular Dynamics Simulations
Srinivasaraghavan Kannan, Kai Kohlhoff, Martin Zacharias
Biophys J. 2006 October 15; 91(8): 2956–2965. Published online 2006 July 21. doi: 10.1529/biophysj.106.087163
PMCID:
PMC1578486
Abstract Full Text PDF–298K
Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome
Nicolas Blot, Ramesh Mavathur, Marcel Geertz, Andrew Travers, Georgi Muskhelishvili
EMBO Rep. 2006 July; 7(7): 710–715. Published online 2006 June 16. doi: 10.1038/sj.embor.7400729
PMCID:
PMC1500834
Abstract Full Text PDF–148K Supplementary Material
Organization of supercoil domains and their reorganization by transcription
Shuang Deng, Richard A. Stein, N. Patrick Higgins
Mol Microbiol. Author manuscript; available in PMC 2006 February 24.
Published in final edited form as: Mol Microbiol. 2005 September; 57(6): 1511–1521. doi: 10.1111/j.1365-2958.2005.04796.x
PMCID:
PMC1382059
Abstract Full Text PDF–291K
Decoding the nucleoid organisation of Bacillus subtilis and Escherichia coli through gene expression data
Anne-Sophie Carpentier, Bruno Torrésani, Alex Grossmann, Alain Hénaut
BMC Genomics. 2005; 6: 84. Published online 2005 June 6. doi: 10.1186/1471-2164-6-84
PMCID:
PMC1177944
Abstract Full Text PDF–417K
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