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How biologically relevant are interaction-based modules in protein networks?
Juan F Poyatos, Laurence D Hurst
Genome Biol. 2004; 5(11): R93. Published online 2004 November 1. doi: 10.1186/gb-2004-5-11-r93
PMCID:
PMC545784
Abstract Full Text PDF–538K Supplementary Material
 Is Cited by the Following 10 Articles in this Archive:
How and when should interactome-derived clusters be used to predict functional modules and protein function?
Jimin Song, Mona Singh
Bioinformatics. 2009 December 1; 25(23): 3143–3150. Published online 2009 September 21. doi: 10.1093/bioinformatics/btp551
PMCID:
PMC3167697
Abstract Full Text PDF–389K Supplementary Material
Triangle network motifs predict complexes by complementing high-error interactomes with structural information
Bill Andreopoulos, Christof Winter, Dirk Labudde, Michael Schroeder
BMC Bioinformatics. 2009; 10: 196. Published online 2009 June 27. doi: 10.1186/1471-2105-10-196
PMCID:
PMC2714575
Abstract Full Text PDF–3.0M Supplementary Material
Defining a Modular Signalling Network from the Fly Interactome
Anaïs Baudot, Jean-Baptiste Angelelli, Alain Guénoche, Bernard Jacq, Christine Brun
BMC Syst Biol. 2008; 2: 45. Published online 2008 May 19. doi: 10.1186/1752-0509-2-45
PMCID:
PMC2405789
Abstract Full Text PDF–1.1M Supplementary Material
Making the most of high-throughput protein-interaction data
Robert Gentleman, Wolfgang Huber
Genome Biol. 2007; 8(10): 112. Published online 2007 November 2. doi: 10.1186/gb-2007-8-10-112
PMCID:
PMC2246275
Abstract Full Text PDF–223K
Protein subnetwork markers improve prediction of cancer outcome
Charles Auffray
Mol Syst Biol. 2007; 3: 141. Published online 2007 October 16. doi: 10.1038/msb4100183
PMCID:
PMC2063583
Full Text PDF–520K
Coverage and error models of protein-protein interaction data by directed graph analysis
Tony Chiang, Denise Scholtens, Deepayan Sarkar, Robert Gentleman, Wolfgang Huber
Genome Biol. 2007; 8(9): R186. Published online 2007 September 10. doi: 10.1186/gb-2007-8-9-r186
PMCID:
PMC2375024
Abstract Full Text PDF–770K Supplementary Material
In Search of the Biological Significance of Modular Structures in Protein Networks
Zhi Wang, Jianzhi Zhang
PLoS Comput Biol. 2007 June; 3(6): e107. Prepublished online 2007 April 30. Published online 2007 June 1. doi: 10.1371/journal.pcbi.0030107
Correction in:
PLoS Comput Biol. 2007 July; 3(7): e146.
PMCID:
PMC1885274
Abstract Full Text PDF–657K Supplementary Material Correction
Evaluation of clustering algorithms for protein-protein interaction networks
Sylvain Brohée, Jacques van Helden
BMC Bioinformatics. 2006; 7: 488. Published online 2006 November 6. doi: 10.1186/1471-2105-7-488
PMCID:
PMC1637120
Abstract Full Text PDF–1.2M Supplementary Material
Protein complexity, gene duplicability and gene dispensability in the yeast genome
Yeong-Shin Lin, Jenn-Kang Hwang, Wen-Hsiung Li
Gene. Author manuscript; available in PMC 2009 July 8.
Published in final edited form as: Gene. 2007 January 31; 387(1-2): 109–117. Published online 2006 September 14. doi: 10.1016/j.gene.2006.08.022
PMCID:
PMC2707112
Abstract Full Text PDF–574K
Differential evolutionary conservation of motif modes in the yeast protein interaction network
Wei-Po Lee, Bing-Chiang Jeng, Tun-Wen Pai, Chin-Pei Tsai, Chang-Yung Yu, Wen-Shyong Tzou
BMC Genomics. 2006; 7: 89. Published online 2006 April 25. doi: 10.1186/1471-2164-7-89
PMCID:
PMC1501022
Abstract Full Text PDF–567K Supplementary Material
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