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Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants
Peter M Palenchar, Andrei Kouranov, Laurence V Lejay, Gloria M Coruzzi
Genome Biol. 2004; 5(11): R91. Published online 2004 October 29. doi: 10.1186/gb-2004-5-11-r91
PMCID:
PMC545782
Abstract Full Text PDF–273K Supplementary Material

Is Cited by the Following 23 Articles in this Archive:

Genome-Wide Patterns of Arabidopsis Gene Expression in Nature
Christina L. Richards, Ulises Rosas, Joshua Banta, Naeha Bhambhra, Michael D. Purugganan
PLoS Genet. 2012 April; 8(4): e1002662. Published online 2012 April 19. doi: 10.1371/journal.pgen.1002662
PMCID:
PMC3330097
Abstract Full Text PDF–935K Supplementary Material
Genome-Wide Identification of MicroRNAs in Response to Low Nitrate Availability in Maize Leaves and Roots
Zhenhua Xu, Sihui Zhong, Xinhai Li, Wenxue Li, Steven J. Rothstein, Shihuang Zhang, Yongmei Bi, Chuanxiao Xie
PLoS One. 2011; 6(11): e28009. Published online 2011 November 23. doi: 10.1371/journal.pone.0028009
PMCID:
PMC3223196
Abstract Full Text PDF–747K Supplementary Material
Nitrogen stress response of a hybrid species: a gene expression study
Larry C. Brouillette, Lisa A. Donovan
Ann Bot. 2011 January; 107(1): 101–108. Published online 2010 October 14. doi: 10.1093/aob/mcq203
PMCID:
PMC3002466
Abstract Full Text PDF–281K
Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis
Mariana Obertello, Gabriel Krouk, Manpreet S Katari, Suzan J Runko, Gloria M Coruzzi
BMC Syst Biol. 2010; 4: 111. Published online 2010 August 12. doi: 10.1186/1752-0509-4-111
PMCID:
PMC2933594
Abstract Full Text PDF–757K Supplementary Material
Identification of Arabidopsis Mutants Impaired in the Systemic Regulation of Root Nitrate Uptake by the Nitrogen Status of the Plant
Thomas Girin, El-Sayed El-Kafafi, Thomas Widiez, Alexander Erban, Hans-Michael Hubberten, Joachim Kopka, Rainer Hoefgen, Alain Gojon, Marc Lepetit
Plant Physiol. 2010 July; 153(3): 1250–1260. Published online 2010 May 6. doi: 10.1104/pp.110.157354
PMCID:
PMC2899898
Abstract Full Text PDF–615K Supplementary Material
Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana
Elena A. Vidal, Viviana Araus, Cheng Lu, Geraint Parry, Pamela J. Green, Gloria M. Coruzzi, Rodrigo A. Gutiérrez
Proc Natl Acad Sci U S A. 2010 March 2; 107(9): 4477–4482. Published online 2010 February 8. doi: 10.1073/pnas.0909571107
PMCID:
PMC2840086
Abstract Full Text PDF–438K Supplementary Material
A Systems-Level Analysis of the Effects of Light Quality on the Metabolism of a Cyanobacterium
Abhay K. Singh, Maitrayee Bhattacharyya-Pakrasi, Thanura Elvitigala, Bijoy Ghosh, Rajeev Aurora, Himadri B. Pakrasi
Plant Physiol. 2009 November; 151(3): 1596–1608. doi: 10.1104/pp.109.144824
PMCID:
PMC2773086
Abstract Full Text PDF–876K Supplementary Material
A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive "biomodule"
Damion Nero, Gabriel Krouk, Daniel Tranchina, Gloria M Coruzzi
BMC Syst Biol. 2009; 3: 59. Published online 2009 June 6. doi: 10.1186/1752-0509-3-59
PMCID:
PMC2702358
Abstract Full Text PDF–1.4M Supplementary Material
A Systems Approach Uncovers Restrictions for Signal Interactions Regulating Genome-wide Responses to Nutritional Cues in Arabidopsis
Gabriel Krouk, Daniel Tranchina, Laurence Lejay, Alexis A. Cruikshank, Dennis Shasha, Gloria M. Coruzzi, Rodrigo A. Gutiérrez
PLoS Comput Biol. 2009 March; 5(3): e1000326. Published online 2009 March 20. doi: 10.1371/journal.pcbi.1000326
PMCID:
PMC2652106
Abstract Full Text PDF–720K Supplementary Material
A pathway-specific microarray analysis highlights the complex and co-ordinated transcriptional networks of the developing grain of field-grown barley
Michael Hansen, Carsten Friis, Steve Bowra, Preben Bach Holm, Eva Vincze
J Exp Bot. 2009 January; 60(1): 153–167. Published online 2008 November 17. doi: 10.1093/jxb/ern270
PMCID:
PMC3298879
Abstract Full Text PDF–574K Supplementary Material
Sugar Sensing and Signaling
Matthew Ramon, Filip Rolland, Jen Sheen
Arabidopsis Book. 2008; 6: e0117. Published online 2008 October 22. doi: 10.1199/tab.0117
PMCID:
PMC3243355
Abstract Full Text PDF–451K
The rules of gene expression in plants: Organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana
Felipe F Aceituno, Nick Moseyko, Seung Y Rhee, Rodrigo A Gutiérrez
BMC Genomics. 2008; 9: 438. Published online 2008 September 23. doi: 10.1186/1471-2164-9-438
PMCID:
PMC2566314
Abstract Full Text PDF–584K Supplementary Material
Convergent energy and stress signaling
Elena Baena-González, Jen Sheen
Trends Plant Sci. Author manuscript; available in PMC 2011 April 13.
Published in final edited form as: Trends Plant Sci. 2008 September; 13(9): 474–482. Published online 2008 August 11. doi: 10.1016/j.tplants.2008.06.006
PMCID:
PMC3075853
Abstract Full Text PDF–154K
Mitochondrial respiratory pathways modulate nitrate sensing and nitrogen-dependent regulation of plant architecture in Nicotiana sylvestris
Till K Pellny, Olivier Van Aken, Christelle Dutilleul, Tonja Wolff, Karin Groten, Melike Bor, Rosine De Paepe, Agnès Reyss, Frank Van Breusegem, Graham Noctor, Christine H Foyer
Plant J. 2008 June; 54(6): 976–992. Published online 2008 April 24. doi: 10.1111/j.1365-313X.2008.03472.x
PMCID:
PMC2440565
Abstract Full Text PDF–940K Supplementary Material
An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis
Karen E Thum, Michael J Shin, Rodrigo A Gutiérrez, Indrani Mukherjee, Manpreet S Katari, Damion Nero, Dennis Shasha, Gloria M Coruzzi
BMC Syst Biol. 2008; 2: 31. Published online 2008 April 4. doi: 10.1186/1752-0509-2-31
PMCID:
PMC2335094
Abstract Full Text PDF–1.2M Supplementary Material
The OSU1/QUA2/TSD2-Encoded Putative Methyltransferase Is a Critical Modulator of Carbon and Nitrogen Nutrient Balance Response in Arabidopsis
Peng Gao, Zeyu Xin, Zhi-Liang Zheng
PLoS ONE. 2008; 3(1): e1387. Published online 2008 January 2. doi: 10.1371/journal.pone.0001387
PMCID:
PMC2148111
Abstract Full Text PDF–600K Supplementary Material
Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis
Yong-Mei Bi, Rong-Lin Wang, Tong Zhu, Steven J Rothstein
BMC Genomics. 2007; 8: 281. Published online 2007 August 16. doi: 10.1186/1471-2164-8-281
PMCID:
PMC1994689
Abstract Full Text PDF–444K Supplementary Material
Super-Genotype: Global Monoclonality Defies the Odds of Nature
Johannes J. Le Roux, Ania M. Wieczorek, Mark G. Wright, Carol T. Tran
PLoS ONE. 2007; 2(7): e590. Published online 2007 July 4. doi: 10.1371/journal.pone.0000590
PMCID:
PMC1895887
Abstract Full Text PDF–1.0M
Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis
Rodrigo A Gutiérrez, Laurence V Lejay, Alexis Dean, Francesca Chiaromonte, Dennis E Shasha, Gloria M Coruzzi
Genome Biol. 2007; 8(1): R7. Published online 2007 January 11. doi: 10.1186/gb-2007-8-1-r7
PMCID:
PMC1839130
Abstract Full Text PDF–619K Supplementary Material
Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis
Rodrigo A Gutiérrez, Laurence V Lejay, Alexis Dean, Francesca Chiaromonte, Dennis E Shasha, Gloria M Coruzzi
Genome Biol. 2007; 8(1): R7. Published online 2007 January 11. doi: 10.1186/gb-2007-8-1-r7
PMCID:
PMC1839130
Abstract Full Text PDF–619K Supplementary Material
Natural Variation for Carbohydrate Content in Arabidopsis. Interaction with Complex Traits Dissected by Quantitative Genetics
Fanny Calenge, Véra Saliba-Colombani, Stéphanie Mahieu, Olivier Loudet, Françoise Daniel-Vedele, Anne Krapp
Plant Physiol. 2006 August; 141(4): 1630–1643. doi: 10.1104/pp.106.082396
PMCID:
PMC1533913
Abstract Full Text PDF–315K
The putative high-affinity nitrate transporter NRT2.1 represses lateral root initiation in response to nutritional cues
Daniel Y. Little, Hongyu Rao, Sabrina Oliva, Françoise Daniel-Vedele, Anne Krapp, Jocelyn E. Malamy
Proc Natl Acad Sci U S A. 2005 September 20; 102(38): 13693–13698. Published online 2005 September 12. doi: 10.1073/pnas.0504219102
PMCID:
PMC1224627
Abstract Full Text PDF–402K Supplementary Material
Mitochondria-Driven Changes in Leaf NAD Status Exert a Crucial Influence on the Control of Nitrate Assimilation and the Integration of Carbon and Nitrogen Metabolism
Christelle Dutilleul, Caroline Lelarge, Jean-Louis Prioul, Rosine De Paepe, Christine H. Foyer, Graham Noctor
Plant Physiol. 2005 September; 139(1): 64–78. doi: 10.1104/pp.105.066399
PMCID:
PMC1203358
Abstract Full Text PDF–653K
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