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Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum
Jinling Huang, Nandita Mullapudi, Cheryl A Lancto, Marla Scott, Mitchell S Abrahamsen, Jessica C Kissinger
Genome Biol. 2004; 5(11): R88. Published online 2004 October 19. doi: 10.1186/gb-2004-5-11-r88
PMCID:
PMC545779
Abstract Full Text PDF–1.4M Supplementary Material
 Is Cited by the Following 23 Articles in this Archive:
Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic and Apicomplexa-Related Chromera velia
Christian Woehle, Tal Dagan, William F. Martin, Sven B. Gould
Genome Biol Evol. 2011; 3: 1220–1230. Published online 2011 September 28. doi: 10.1093/gbe/evr100
PMCID:
PMC3205606
Abstract Full Text PDF–822K
Jumbled Genomes: Missing Apicomplexan Synteny
Jeremy D. DeBarry, Jessica C. Kissinger
Mol Biol Evol. 2011 October; 28(10): 2855–2871. Published online 2011 April 19. doi: 10.1093/molbev/msr103
PMCID:
PMC3176833
Abstract Full Text PDF–1.8M Supplementary Material
Lipoic Acid Metabolism in Microbial Pathogens
Maroya D. Spalding, Sean T. Prigge
Microbiol Mol Biol Rev. 2010 June; 74(2): 200–228. doi: 10.1128/MMBR.00008-10
PMCID:
PMC2884412
Abstract Full Text PDF–1.8M
Horizontal gene transfer in evolution: facts and challenges
Luis Boto
Proc Biol Sci. 2010 March 22; 277(1683): 819–827. Published online 2009 November 28. doi: 10.1098/rspb.2009.1679
PMCID:
PMC2842723
Abstract Full Text PDF–240K
A Genome-Sequence Survey for Ascogregarina taiwanensis Supports Evolutionary Affiliation but Metabolic Diversity between a Gregarine and Cryptosporidium
Thomas J. Templeton, Shinichiro Enomoto, Wei-June Chen, Chin-Gi Huang, Cheryl A. Lancto, Mitchell S. Abrahamsen, Guan Zhu
Mol Biol Evol. 2010 February; 27(2): 235–248. Published online 2009 September 24. doi: 10.1093/molbev/msp226
PMCID:
PMC2877549
Abstract Full Text PDF–1.0M Supplementary Material
Cyanobacterial contribution to the genomes of the plastid-lacking protists
Shinichiro Maruyama, Motomichi Matsuzaki, Kazuharu Misawa, Hisayoshi Nozaki
BMC Evol Biol. 2009; 9: 197. Published online 2009 August 11. doi: 10.1186/1471-2148-9-197
PMCID:
PMC3087521
Abstract Full Text PDF–417K Supplementary Material
Insertion of Horizontally Transferred Genes within Conserved Syntenic Regions of Yeast Genomes
Thomas Rolland, Cécile Neuvéglise, Christine Sacerdot, Bernard Dujon
PLoS One. 2009; 4(8): e6515. Published online 2009 August 5. doi: 10.1371/journal.pone.0006515
PMCID:
PMC2715888
Abstract Full Text PDF–831K Supplementary Material
The origins of apicomplexan sequence innovation
James Wasmuth, Jennifer Daub, José Manuel Peregrín-Alvarez, Constance A.M. Finney, John Parkinson
Genome Res. 2009 July; 19(7): 1202–1213. doi: 10.1101/gr.083386.108
PMCID:
PMC2704437
Abstract Full Text PDF–1.1M
An Unusual ERAD-Like Complex Is Targeted to the Apicoplast of Plasmodium falciparum
Simone Spork, Jan A. Hiss, Katharina Mandel, Maik Sommer, Taco W. A. Kooij, Trang Chu, Gisbert Schneider, Uwe G. Maier, Jude M. Przyborski
Eukaryot Cell. 2009 August; 8(8): 1134–1145. Published online 2009 June 5. doi: 10.1128/EC.00083-09
PMCID:
PMC2725561
Abstract Full Text PDF–1.7M Supplementary Material
The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes
John W Whitaker, Glenn A McConkey, David R Westhead
Genome Biol. 2009; 10(4): R36. Published online 2009 April 15. doi: 10.1186/gb-2009-10-4-r36
PMCID:
PMC2688927
Abstract Full Text PDF–454K Supplementary Material
metaTIGER: a metabolic evolution resource
John W. Whitaker, Ivica Letunic, Glenn A. McConkey, David R. Westhead
Nucleic Acids Res. 2009 January; 37(Database issue): D531–D538. Published online 2009 January. doi: 10.1093/nar/gkn826
PMCID:
PMC2686446
Abstract Full Text PDF–3.0M
Cryptosporidium: Genomic and Biochemical Features
Stanley Dean Rider, Jr., Guan Zhu
Exp Parasitol. Author manuscript; available in PMC 2011 January 1.
Published in final edited form as: Exp Parasitol. 2010 January; 124(1): 2. Published online 2008 December 31. doi: 10.1016/j.exppara.2008.12.014
PMCID:
PMC2819285
Abstract Full Text PDF–68K
The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees
Chih-Horng Kuo, John P. Wares, Jessica C. Kissinger
Mol Biol Evol. 2008 December; 25(12): 2689–2698. Published online 2008 September 26. doi: 10.1093/molbev/msn213
PMCID:
PMC2582981
Abstract Full Text PDF–131K Supplementary Material
Concerted gene recruitment in early plant evolution
Jinling Huang, J Peter Gogarten
Genome Biol. 2008; 9(7): R109. Published online 2008 July 8. doi: 10.1186/gb-2008-9-7-r109
PMCID:
PMC2530860
Abstract Full Text PDF–402K Supplementary Material
Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic
Adrian Reyes-Prieto, Ahmed Moustafa, Debashish Bhattacharya
Curr Biol. Author manuscript; available in PMC 2009 July 8.
Published in final edited form as: Curr Biol. 2008 July 8; 18(13): 956–962. doi: 10.1016/j.cub.2008.05.042
PMCID:
PMC2577054
Abstract Full Text PDF–1.1M Supplementary Material
Identification of multiple independent horizontal gene transfers into poxviruses using a comparative genomics approach
Kirsten A Bratke, Aoife McLysaght
BMC Evol Biol. 2008; 8: 67. Published online 2008 February 27. doi: 10.1186/1471-2148-8-67
PMCID:
PMC2268676
Abstract Full Text PDF–592K Supplementary Material
Horizontal gene transfer in chromalveolates
Tetyana Nosenko, Debashish Bhattacharya
BMC Evol Biol. 2007; 7: 173. Published online 2007 September 25. doi: 10.1186/1471-2148-7-173
PMCID:
PMC2064935
Abstract Full Text PDF–509K Supplementary Material
Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids?
Jinling Huang, Johann Peter Gogarten
Genome Biol. 2007; 8(6): R99. Published online 2007 June 4. doi: 10.1186/gb-2007-8-6-r99
PMCID:
PMC2394758
Abstract Full Text PDF–398K Supplementary Material
Complex distribution of EFL and EF-1α proteins in the green algal lineage
Geoffrey P Noble, Matthew B Rogers, Patrick J Keeling
BMC Evol Biol. 2007; 7: 82. Published online 2007 May 23. doi: 10.1186/1471-2148-7-82
PMCID:
PMC1891102
Abstract Full Text PDF–367K Supplementary Material
A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution
Jan O Andersson, Åsa M Sjögren, David S Horner, Colleen A Murphy, Patricia L Dyal, Staffan G Svärd, John M Logsdon, Jr, Mark A Ragan, Robert P Hirt, Andrew J Roger
BMC Genomics. 2007; 8: 51. Published online 2007 February 14. doi: 10.1186/1471-2164-8-51
PMCID:
PMC1805757
Abstract Full Text PDF–853K Supplementary Material
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote
Jonathan A Eisen, Robert S Coyne, Martin Wu, Dongying Wu, Mathangi Thiagarajan, Jennifer R Wortman, Jonathan H Badger, Qinghu Ren, Paolo Amedeo, Kristie M Jones, Luke J Tallon, Arthur L Delcher, Steven L Salzberg, Joana C Silva, Brian J Haas, William H Majoros, Maryam Farzad, Jane M Carlton, Roger K Smith, Jr., Jyoti Garg, Ronald E Pearlman, Kathleen M Karrer, Lei Sun, Gerard Manning, Nels C Elde, Aaron P Turkewitz, David J Asai, David E Wilkes, Yufeng Wang, Hong Cai, Kathleen Collins, B. Andrew Stewart, Suzanne R Lee, Katarzyna Wilamowska, Zasha Weinberg, Walter L Ruzzo, Dorota Wloga, Jacek Gaertig, Joseph Frankel, Che-Chia Tsao, Martin A Gorovsky, Patrick J Keeling, Ross F Waller, Nicola J Patron, J. Michael Cherry, Nicholas A Stover, Cynthia J Krieger, Christina del Toro, Hilary F Ryder, Sondra C Williamson, Rebecca A Barbeau, Eileen P Hamilton, Eduardo Orias
PLoS Biol. 2006 September; 4(9): e286. Published online 2006 August 29. doi: 10.1371/journal.pbio.0040286
PMCID:
PMC1557398
Abstract Full Text PDF–953K Supplementary Material
Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes
Jan O Andersson, Robert P Hirt, Peter G Foster, Andrew J Roger
BMC Evol Biol. 2006; 6: 27. Published online 2006 March 21. doi: 10.1186/1471-2148-6-27
PMCID:
PMC1484493
Abstract Full Text PDF–487K Supplementary Material
A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities
Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eric Maréchal
BMC Bioinformatics. 2005; 6: 49. Published online 2005 March 10. doi: 10.1186/1471-2105-6-49
PMCID:
PMC555736
Abstract Full Text PDF–533K
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