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Alternative splicing of mouse transcription factors affects their DNA-binding domain architecture and is tissue specific
Bahar Taneri, Ben Snyder, Alexey Novoradovsky, Terry Gaasterland
Genome Biol. 2004; 5(10): R75. Published online 2004 September 30. doi: 10.1186/gb-2004-5-10-r75
PMCID:
PMC545595
Abstract Full Text PDF–266K

Is Cited by the Following 21 Articles in this Archive:

Predicting the Impact of Alternative Splicing on Plant MADS Domain Protein Function
Edouard I. Severing, Aalt D. J. van Dijk, Giuseppa Morabito, Jacqueline Busscher-Lange, Richard G. H. Immink, Roeland C. H. J. van Ham
PLoS One. 2012; 7(1): e30524. Published online 2012 January 25. doi: 10.1371/journal.pone.0030524
PMCID:
PMC3266260
Abstract Full Text PDF–427K Supplementary Material
GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR
Carine Gubelmann, Alexandre Gattiker, Andreas Massouras, Korneel Hens, Fabrice David, Frederik Decouttere, Jacques Rougemont, Bart Deplancke
Database (Oxford) 2011; 2011: bar040. Published online 2011 September 14. doi: 10.1093/database/bar040
PMCID:
PMC3173022
Abstract Full Text PDF–1.3M
Networking in a global world: Establishing functional connections between neural splicing regulators and their target transcripts
John A. Calarco, Mei Zhen, Benjamin J. Blencowe
RNA. 2011 May; 17(5): 775–791. doi: 10.1261/rna.2603911
PMCID:
PMC3078728
Abstract Full Text PDF–439K
Functional variation of alternative splice forms in their protein interaction networks: a literature mining approach
Şenay Kafkas, Ekrem Varoğlu, Dietrich Rebholz-Schuhmann, Bahar Taneri
BMC Bioinformatics. 2010; 11(Suppl 5): P1. Published online 2010 October 6. doi: 10.1186/1471-2105-11-S5-P1
PMCID:
PMC2956394
Full Text PDF–153K
Genomic repertoires of DNA-binding transcription factors across the tree of life
Varodom Charoensawan, Derek Wilson, Sarah A. Teichmann
Nucleic Acids Res. 2010 November; 38(21): 7364–7377. Published online 2010 July 30. doi: 10.1093/nar/gkq617
PMCID:
PMC2995046
Abstract Full Text PDF–2.4M Supplementary Material
Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes
Eduardo R Macagno, Terry Gaasterland, Lee Edsall, Vineet Bafna, Marcelo B Soares, Todd Scheetz, Thomas Casavant, Corinne Da Silva, Patrick Wincker, Aurélie Tasiemski, Michel Salzet
BMC Genomics. 2010; 11: 407. Published online 2010 June 25. doi: 10.1186/1471-2164-11-407
PMCID:
PMC2996935
Abstract Full Text PDF–985K Supplementary Material
Splicing factor and exon profiling across human tissues
Pierre de la Grange, Lise Gratadou, Marc Delord, Martin Dutertre, Didier Auboeuf
Nucleic Acids Res. 2010 May; 38(9): 2825–2838. Published online 2010 January 27. doi: 10.1093/nar/gkq008
PMCID:
PMC2875023
Abstract Full Text PDF–18M Supplementary Material
Alternative Splicing in the Differentiation of Human Embryonic Stem Cells into Cardiac Precursors
Nathan Salomonis, Brandon Nelson, Karen Vranizan, Alexander R. Pico, Kristina Hanspers, Allan Kuchinsky, Linda Ta, Mark Mercola, Bruce R. Conklin
PLoS Comput Biol. 2009 November; 5(11): e1000553. Published online 2009 November 6. doi: 10.1371/journal.pcbi.1000553
PMCID:
PMC2764345
Abstract Full Text PDF–1.6M Supplementary Material
Neurospora crassa mat A-2 and mat A-3 proteins weakly interact in the yeast two-hybrid system and affect yeast growth
Carla C. da Silva, Rosana C. Cruz, Mônica Bucciarelli-Rodriguez, Adlane Vilas-Boas
Genet Mol Biol. 2009 Apr-Jun; 32(2): 354–361. Published online 2009 June 1. doi: 10.1590/S1415-47572009000200023
PMCID:
PMC3036917
Abstract Full Text PDF–187K
Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome
Edouard I Severing, Aalt DJ van Dijk, Willem J Stiekema, Roeland CHJ van Ham
BMC Genomics. 2009; 10: 154. Published online 2009 April 9. doi: 10.1186/1471-2164-10-154
PMCID:
PMC2674458
Abstract Full Text PDF–371K Supplementary Material
Splice-mediated Variants of Proteins (SpliVaP) – data and characterization of changes in signatures among protein isoforms due to alternative splicing
Matteo Floris, Massimiliano Orsini, Thangavel Alphonse Thanaraj
BMC Genomics. 2008; 9: 453. Published online 2008 October 2. doi: 10.1186/1471-2164-9-453
PMCID:
PMC2573899
Abstract Full Text PDF–576K Supplementary Material
Transcription factor functionality and transcription regulatory networks
Christian A. Grove, Albertha J. M. Walhout
Mol Biosyst. Author manuscript; available in PMC 2009 April 27.
Published in final edited form as: Mol Biosyst. 2008 April; 4(4): 309–314. Published online 2008 February 21. doi: 10.1039/b715909a
PMCID:
PMC2673723
Abstract Full Text PDF–621K
The animal in the genome: comparative genomics and evolution
Richard R Copley
Philos Trans R Soc Lond B Biol Sci. 2008 April 27; 363(1496): 1453–1461. Published online 2008 January 11. doi: 10.1098/rstb.2007.2235
PMCID:
PMC2614226
Abstract Full Text PDF–734K
Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing
Manuel Irimia, Jakob Lewin Rukov, David Penny, Scott William Roy
BMC Evol Biol. 2007; 7: 188. Published online 2007 October 4. doi: 10.1186/1471-2148-7-188
PMCID:
PMC2082043
Abstract Full Text PDF–456K Supplementary Material
Variety is the Splice of Life
Mukesh K. Jain, Anne Hamik
J Mol Cell Cardiol. Author manuscript; available in PMC 2009 May 4.
Published in final edited form as: J Mol Cell Cardiol. 2008 January; 44(1): 44–46. Published online 2007 September 29. doi: 10.1016/j.yjmcc.2007.09.011
PMCID:
PMC2676773
Full Text PDF–286K
Alternative splicing of c-fos pre-mRNA: contribution of the rates of synthesis and degradation to the copy number of each transcript isoform and detection of a truncated c-Fos immunoreactive species
Juan Jurado, Carlos A Fuentes-Almagro, María J Prieto-Álamo, Carmen Pueyo
BMC Mol Biol. 2007; 8: 83. Published online 2007 September 21. doi: 10.1186/1471-2199-8-83
PMCID:
PMC2098773
Abstract Full Text PDF–836K Supplementary Material
BIPASS: BioInformatics Pipeline Alternative Splicing Services
Zoé Lacroix, Christophe Legendre, Louiqa Raschid, Ben Snyder
Nucleic Acids Res. 2007 July; 35(Web Server issue): W292–W296. Published online 2007 July. doi: 10.1093/nar/gkm344
PMCID:
PMC1933140
Abstract Full Text PDF–555K Supplementary Material
A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors
Camila Caldana, Wolf-Rüdiger Scheible, Bernd Mueller-Roeber, Slobodan Ruzicic
Plant Methods. 2007; 3: 7. Published online 2007 June 8. doi: 10.1186/1746-4811-3-7
PMCID:
PMC1914063
Abstract Full Text PDF–622K Supplementary Material
Structure function analysis of SH2D2A isoforms expressed in T cells reveals a crucial role for the proline rich region encoded by SH2D2A exon 7
Stine Granum, Vibeke Sundvold-Gjerstad, Ke-Zheng Dai, Kristin Melkevik Kolltveit, Kjersti Hildebrand, Henrik S Huitfeldt, Tor Lea, Anne Spurkland
BMC Immunol. 2006; 7: 15. Published online 2006 July 13. doi: 10.1186/1471-2172-7-15
PMCID:
PMC1553471
Abstract Full Text PDF–977K
A compendium of Caenhorabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks
John S Reece-Hoyes, Bart Deplancke, Jane Shingles, Christian A Grove, Ian A Hope, Albertha JM Walhout
Genome Biol. 2005; 6(13): R110. Published online 2005 December 30. doi: 10.1186/gb-2005-6-13-r110
PMCID:
PMC1414109
Abstract Full Text PDF–550K Supplementary Material
Hollywood: a comparative relational database of alternative splicing
Dirk Holste, George Huo, Vivian Tung, Christopher B. Burge
Nucleic Acids Res. 2006 January 1; 34(Database issue): D56–D62. Published online 2005 December 28. doi: 10.1093/nar/gkj048
PMCID:
PMC1347411
Abstract Full Text PDF–428K
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