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Variation in alternative splicing across human tissues
Gene Yeo, Dirk Holste, Gabriel Kreiman, Christopher B Burge
Genome Biol. 2004; 5(10): R74. Published online 2004 September 13. doi: 10.1186/gb-2004-5-10-r74
PMCID:
PMC545594
Abstract Full Text PDF–587K Supplementary Material

Is Cited by the Following 80 Articles in this Archive:

mRNA Transcript Diversity Creates New Opportunities for Pharmacological Intervention
Elizabeth S. Barrie, Ryan M. Smith, Jonathan C. Sanford, Wolfgang Sadee
Mol Pharmacol. 2012 May; 81(5): 620–630. doi: 10.1124/mol.111.076604
PMCID:
PMC3336806
Free in PMC on 2013/05/01
The relationship between proteome size, structural disorder and organism complexity
Eva Schad, Peter Tompa, Hedi Hegyi
Genome Biol. 2011; 12(12): R120. Published online 2011 December 19. doi: 10.1186/gb-2011-12-12-r120
PMCID:
PMC3334615
Abstract Full Text PDF–449K Supplementary Material
SpliceDisease database: linking RNA splicing and disease
Juan Wang, Jie Zhang, Kaibo Li, Wei Zhao, Qinghua Cui
Nucleic Acids Res. 2012 January; 40(D1): D1055–D1059. Published online 2011 December 1. doi: 10.1093/nar/gkr1171
PMCID:
PMC3245055
Abstract Full Text PDF–2.0M
Detection of KIAA1549-BRAF Fusion Transcripts in Formalin-Fixed Paraffin-Embedded Pediatric Low-Grade Gliomas
Yongji Tian, Benjamin E. Rich, Natalie Vena, Justin M. Craig, Laura E. MacConaill, Veena Rajaram, Stewart Goldman, Hala Taha, Madeha Mahmoud, Memet Ozek, Aydin Sav, Janina A. Longtine, Neal I. Lindeman, Levi A. Garraway, Azra H. Ligon, Charles D. Stiles, Sandro Santagata, Jennifer A. Chan, Mark W. Kieran, Keith L. Ligon
J Mol Diagn. 2011 November; 13(6): 669–677. doi: 10.1016/j.jmoldx.2011.07.002
PMCID:
PMC3194058
Free in PMC on 2012/11/01
The RNA recognition motif protein RBM11 is a novel tissue-specific splicing regulator
Simona Pedrotti, Roberta Busà, Claudia Compagnucci, Claudio Sette
Nucleic Acids Res. 2012 February; 40(3): 1021–1032. Published online 2011 October 7. doi: 10.1093/nar/gkr819
PMCID:
PMC3273811
Abstract Full Text PDF–8.7M Supplementary Material
Loss of exon identity is a common mechanism of human inherited disease
Timothy Sterne-Weiler, Jonathan Howard, Matthew Mort, David N. Cooper, Jeremy R. Sanford
Genome Res. 2011 October; 21(10): 1563–1571. doi: 10.1101/gr.118638.110
PMCID:
PMC3202274
Abstract Full Text PDF–725K
Molecular design of a splicing switch responsive to the RNA binding protein Tra2β
Sushma Nagaraja Grellscheid, Caroline Dalgliesh, Agata Rozanska, David Grellscheid, Cyril F. Bourgeois, James Stévenin, David J. Elliott
Nucleic Acids Res. 2011 October; 39(18): 8092–8104. Published online 2011 June 30. doi: 10.1093/nar/gkr495
PMCID:
PMC3185414
Abstract Full Text PDF–6.6M
Dynamic usage of alternative splicing exons during mouse retina development
Jun Wan, Tomohiro Masuda, Laszlo Hackler, Jr, Kieron M. Torres, Shannath L. Merbs, Donald J. Zack, Jiang Qian
Nucleic Acids Res. 2011 October; 39(18): 7920–7930. Published online 2011 June 30. doi: 10.1093/nar/gkr545
PMCID:
PMC3185435
Abstract Full Text PDF–5.5M Supplementary Material
Identification and functional characterization in vivo of a novel splice variant of LDLR in rhesus macaques
Sadik H. Kassim, Luk H. Vandenberghe, Ruben Hovhannisyan, James M. Wilson, Daniel J. Rader
Physiol Genomics. 2011 August; 43(15): 911–916. Published online 2011 May 31. doi: 10.1152/physiolgenomics.00006.2011
PMCID:
PMC3180732
Free in PMC on 2012/08/01
Dysfunctional Gene Splicing as a Potential Contributor to Neuropsychiatric Disorders
Stephen J. Glatt, Ori S. Cohen, Stephen V. Faraone, Ming T. Tsuang
Am J Med Genet B Neuropsychiatr Genet. Author manuscript; available in PMC 2012 June 1.
Published in final edited form as: Am J Med Genet B Neuropsychiatr Genet. 2011 June; 156B(4): 382–392. Published online 2011 March 22. doi: 10.1002/ajmg.b.31181
PMCID:
PMC3082621
Free in PMC on 2012/06/01
Stepwise assembly of the Nova-regulated alternative splicing network in the vertebrate brain
Manuel Irimia, Amanda Denuc, Demián Burguera, Ildiko Somorjai, Jose M. Martín-Durán, Grigory Genikhovich, Senda Jimenez-Delgado, Ulrich Technau, Scott W. Roy, Gemma Marfany, Jordi Garcia-Fernàndez
Proc Natl Acad Sci U S A. 2011 March 29; 108(13): 5319–5324. Published online 2011 March 9. doi: 10.1073/pnas.1012333108
PMCID:
PMC3069165
Abstract Full Text PDF–822K Supplementary Material
Deficiency of Splicing Factor 1 suppresses occurrence of testicular germ cell tumors
Rui Zhu, Jason Heaney, Joseph H. Nadeau, Sara Ali, Angabin Matin
Cancer Res. Author manuscript; available in PMC 2011 September 15.
Published in final edited form as: Cancer Res. 2010 September 15; 70(18): 7264–7272. Published online 2010 August 24. doi: 10.1158/0008-5472.CAN-10-0820
PMCID:
PMC2940986
Abstract Full Text PDF–646K Supplementary Material
Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNA-Seq
Augix Guohua Xu, Liu He, Zhongshan Li, Ying Xu, Mingfeng Li, Xing Fu, Zheng Yan, Yuan Yuan, Corinna Menzel, Na Li, Mehmet Somel, Hao Hu, Wei Chen, Svante Pääbo, Philipp Khaitovich
PLoS Comput Biol. 2010 July; 6(7): e1000843. Published online 2010 July 1. doi: 10.1371/journal.pcbi.1000843
PMCID:
PMC2895644
Abstract Full Text PDF–905K Supplementary Material
Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq
Qiang Gan, Iouri Chepelev, Gang Wei, Lama Tarayrah, Kairong Cui, Keji Zhao, Xin Chen
Cell Res. Author manuscript; available in PMC 2011 January 1.
Published in final edited form as: Cell Res. 2010 July; 20(7): 763–783. Published online 2010 May 4. doi: 10.1038/cr.2010.64
PMCID:
PMC2919574
Abstract Full Text PDF–3.1M Supplementary Material
Splicing factor and exon profiling across human tissues
Pierre de la Grange, Lise Gratadou, Marc Delord, Martin Dutertre, Didier Auboeuf
Nucleic Acids Res. 2010 May; 38(9): 2825–2838. Published online 2010 January 27. doi: 10.1093/nar/gkq008
PMCID:
PMC2875023
Abstract Full Text PDF–18M Supplementary Material
Detection, Validation, and Downstream Analysis of Allelic Variation in Gene Expression
Daniel C. Ciobanu, Lu Lu, Khyobeni Mozhui, Xusheng Wang, Manjunatha Jagalur, John A. Morris, William L. Taylor, Klaus Dietz, Perikles Simon, Robert W. Williams
Genetics. 2010 January; 184(1): 119–128. doi: 10.1534/genetics.109.107474
PMCID:
PMC2802080
Abstract Full Text PDF–1.0M
Discovery of novel human transcript variants by analysis of intronic single-block EST with polyadenylation site
Pingzhang Wang, Peng Yu, Peng Gao, Taiping Shi, Dalong Ma
BMC Genomics. 2009; 10: 518. Published online 2009 November 12. doi: 10.1186/1471-2164-10-518
PMCID:
PMC2784480
Abstract Full Text PDF–904K Supplementary Material
The Germ Cell Nuclear Proteins hnRNP G-T and RBMY Activate a Testis-Specific Exon
Yilei Liu, Cyril F. Bourgeois, Shaochen Pang, Marek Kudla, Natacha Dreumont, Liliane Kister, Yong-Hua Sun, James Stevenin, David J. Elliott
PLoS Genet. 2009 November; 5(11): e1000707. Published online 2009 November 6. doi: 10.1371/journal.pgen.1000707
PMCID:
PMC2762042
Abstract Full Text PDF–1.1M Supplementary Material
Identification of Neuronal Nuclei (NeuN) as Fox-3, a New Member of the Fox-1 Gene Family of Splicing Factors
Kee K. Kim, Robert S. Adelstein, Sachiyo Kawamoto
J Biol Chem. 2009 November 6; 284(45): 31052–31061. Published online 2009 August 27. doi: 10.1074/jbc.M109.052969
PMCID:
PMC2781505
Abstract Full Text Supplementary Material
Stochastic noise in splicing machinery
Eugene Melamud, John Moult
Nucleic Acids Res. 2009 August; 37(14): 4873–4886. Published online 2009 August. doi: 10.1093/nar/gkp471
PMCID:
PMC2724286
Abstract Full Text PDF–1.6M Supplementary Material
Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing
Xin Wang, Kejun Wang, Milan Radovich, Yue Wang, Guohua Wang, Weixing Feng, Jeremy R Sanford, Yunlong Liu
BMC Genomics. 2009; 10(Suppl 1): S4. Published online 2009 July 7. doi: 10.1186/1471-2164-10-S1-S4
PMCID:
PMC2709265
Abstract Full Text PDF–1.5M
CUGBP2 directly interacts with U2 17S snRNP components and promotes U2 snRNA binding to cardiac troponin T pre-mRNA
Young-Hwa Goo, Thomas A. Cooper
Nucleic Acids Res. 2009 July; 37(13): 4275–4286. Published online 2009 July. doi: 10.1093/nar/gkp346
PMCID:
PMC2715230
Abstract Full Text PDF–3.2M Supplementary Material
Functional and Evolutionary Insights Into Human Brain Development Through Global Transcriptome Analysis
Matthew B. Johnson, Yuka Imamura Kawasawa, Christopher E. Mason, Željka Krsnik, Giovanni Coppola, Darko Bogdanović, Daniel H. Geschwind, Shrikant M. Mane, Matthew W. State, Nenad Šestan
Neuron. Author manuscript; available in PMC 2010 May 28.
Published in final edited form as: Neuron. 2009 May 28; 62(4): 494–509. doi: 10.1016/j.neuron.2009.03.027
PMCID:
PMC2739738
Abstract Full Text PDF–5.9M Supplementary Material
Differential splicing using whole-transcript microarrays
Mark D Robinson, Terence P Speed
BMC Bioinformatics. 2009; 10: 156. Published online 2009 May 22. doi: 10.1186/1471-2105-10-156
PMCID:
PMC2703633
Abstract Full Text PDF–1.4M Supplementary Material
GarlicESTdb: an online database and mining tool for garlic EST sequences
Dae-Won Kim, Tae-Sung Jung, Seong-Hyeuk Nam, Hyuk-Ryul Kwon, Aeri Kim, Sung-Hwa Chae, Sang-Haeng Choi, Dong-Wook Kim, Ryong Nam Kim, Hong-Seog Park
BMC Plant Biol. 2009; 9: 61. Published online 2009 May 18. doi: 10.1186/1471-2229-9-61
PMCID:
PMC2689220
Abstract Full Text PDF–782K Supplementary Material
Conserved Alternative Splicing and Expression Patterns of Arthropod N-Cadherin
Shu-Ning Hsu, Shinichi Yonekura, Chun-Yuan Ting, Hugh M. Robertson, Youichi Iwai, Tadashi Uemura, Chi-Hon Lee, Akira Chiba
PLoS Genet. 2009 April; 5(4): e1000441. Published online 2009 April 3. doi: 10.1371/journal.pgen.1000441
PMCID:
PMC2655722
Abstract Full Text PDF–2.6M Supplementary Material
A family of splice variants of CstF-64 expressed in vertebrate nervous systems
Ganesh S Shankarling, Penelope W Coates, Brinda Dass, Clinton C MacDonald
BMC Mol Biol. 2009; 10: 22. Published online 2009 March 12. doi: 10.1186/1471-2199-10-22
PMCID:
PMC2660332
Abstract Full Text PDF–926K Supplementary Material
Lymphocytes from P2X7-deficient mice exhibit enhanced P2X7 responses
Simon R. J. Taylor, Mireya Gonzalez-Begne, Dorothy K. Sojka, Jill C. Richardson, Steven A. Sheardown, Stephen M. Harrison, Charles D. Pusey, Frederick W. K. Tam, James I. Elliott
J Leukoc Biol. 2009 June; 85(6): 978–986. Published online 2009 March 10. doi: 10.1189/jlb.0408251
PMCID:
PMC2698584
Abstract Full Text
Genomic Landscape of Developing Male Germ Cells
Tin-Lap Lee, Alan Lap-Yin Pang, Owen M. Rennert, Wai-Yee Chan
Birth Defects Res C Embryo Today. Author manuscript; available in PMC 2010 September 15.
Published in final edited form as: Birth Defects Res C Embryo Today. 2009 March; 87(1): 43–63. doi: 10.1002/bdrc.20147
PMCID:
PMC2939912
Abstract Full Text PDF–1.4M
A Missense Mutation in CASK Causes FG Syndrome in an Italian Family
Giulio Piluso, Francesca D'Amico, Valentina Saccone, Ettore Bismuto, Ida Luisa Rotundo, Marina Di Domenico, Stefania Aurino, Charles E. Schwartz, Giovanni Neri, Vincenzo Nigro
Am J Hum Genet. 2009 February 13; 84(2): 162–177. doi: 10.1016/j.ajhg.2008.12.018
PMCID:
PMC2668001
Abstract Full Text PDF–2.0M Supplementary Material
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