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Logo of jcinvestThe Journal of Clinical InvestigationCurrent IssueArchiveSubscriptionAbout the Journal
J Clin Invest. Feb 1, 2005; 115(2): 369–378.
Published online Jan 13, 2005. doi:  10.1172/JCI200522094
PMCID: PMC544036

Chronic lymphocytic leukemia B cells contain anomalous Lyn tyrosine kinase, a putative contribution to defective apoptosis


B cell chronic lymphocytic leukemia (B-CLL) is a neoplastic disorder characterized by accumulation of B lymphocytes due to uncontrolled growth and resistance to apoptosis. Analysis of B cells freshly isolated from 40 patients with chronic lymphocytic leukemia demonstrated that the Src kinase Lyn, the switch molecule that couples the B cell receptor to downstream signaling, displays anomalous properties. Lyn is remarkably overexpressed at the protein level in leukemic cells as compared with normal B lymphocytes, with a substantial aliquot of the kinase anomalously present in the cytosol. Whereas in normal B lymphocytes Lyn activation is dependent on B cell–receptor stimulation, in resting malignant cells, the constitutive activity of the kinase accounts for high basal protein tyrosine phosphorylation and low responsiveness to IgM ligation. Addition of the Lyn inhibitors PP2 and SU6656 to leukemic cell cultures restores cell apoptosis, and treatment of malignant cells with drugs that induce cell apoptosis decreases both activity and amount of the tyrosine kinase. These findings suggest a direct correlation between high basal Lyn activity and defects in the induction of apoptosis in leukemic cells. They also support a critical role for Lyn in B-CLL pathogenesis and identify this tyrosine kinase as a potential therapeutic target.


B cell chronic lymphocytic leukemia (B-CLL) is the most common leukemia in adults and is characterized by the accumulation of mature B lymphocytes in the G0/G1 phase of the cell cycle, expressing B cell–related (i.e., CD19, surface Igs) and –unrelated (CD5 and CD23) molecules (1, 2). At an early stage of the disease, B lymphocyte accumulation is likely to be consequent to an undefined defect in the apoptotic machinery rather than to an increase in proliferation of leukemic cells (3, 4). Several approaches have been developed to identify selective targets for new therapeutic strategies in this disorder. Particular attention has been devoted to the clinical utility of molecules recognizing surface membrane antigens (i.e., CD20 and CD52) (58). By contrast, the signal transduction pathways underlying the abnormalities of these leukemic cells are poorly understood. No data are available on deregulated cell signaling in B-CLL. In this regard, it is known that malignant CLL B cells express low levels of surface Igs, as well as Igα and Igβ (CD79a and CD79b), which compose the B cell receptor (BCR) (3, 4, 913). This pattern is associated with the functional deficiency of leukemic cells to capture and respond to antigens. This BCR deficiency has been associated with several abnormalities of the heterodimer, especially the CD79b. This finding has been thought to be consequent to reduced expression of CD79b mRNA, mutations, and overexpression of a product derived from an alternative splicing of CD79b (912, 14, 15). Although a dysregulation of BCR has been reported in this disease, little is known about the cell signaling delivered by BCR ligation in leukemic cells obtained from B-CLL patients (16). A better understanding of the molecular etiology of B-CLL, that is, the identification and functional characterization of the signaling protein(s) that are responsible for this disease, will undoubtedly provide important clues to the clinical behavior of B-CLL and might suggest new potential targets for effective therapy.

Normal B cells are instructed continuously by BCR signals to make crucial cell-fate decisions at several checkpoints during their development. Recent evidence has clarified how BCR signals regulate cell fate (1719). Current concepts support a model in which BCR engagement leads to the phosphorylation of the immunoreceptor tyrosine-based activation motifs (ITAMs) located in the cytoplasmic tails of CD79a/CD79b by the Src-related tyrosine kinase Lyn. ITAM phosphorylation creates the docking sites for the recruitment and activation of the Syk tyrosine kinase (18, 20). This triggers downstream signals leading to cellular proliferation, survival, or apoptosis, depending on cosignals received by the cell and the stage of cellular differentiation (17).

Because Lyn activation plays a pivotal role in the signaling cascade triggered by BCR engagement, we investigated whether this kinase may be involved in the pathogenesis of chronic lymphocytic leukemia (CLL). In the present study, we demonstrate that in B-CLL, as compared with normal B cells, the Lyn protein is upregulated and shows a different subcellular localization. Moreover, tyrosine kinase displays a remarkable constitutive activity, which leads to an increased basal tyrosine protein phosphorylation and a low responsiveness to BCR ligation. While amount and activity of Lyn are decreased by drugs that induce apoptosis in cultured CLL B cells, Lyn inhibitors remarkably reduce the survival of the leukemic cells.


Protein tyrosine phosphorylation is abnormal in B-CLL.

The cellular protein tyrosine phosphorylation of B cells is reported in Figure Figure1.1. Normal B lymphocytes, used as controls, showed a very low tyrosine phosphorylation, whereas freshly isolated leukemic cells from the 40 patients analyzed displayed abnormally high immunostaining for phosphorylated tyrosine. CLL samples shown in Figure Figure11 were selected in order to include patients defined by different clinical stages (Table (Table1)1) and representative of the different protein tyrosine phosphorylation patterns obtained. In particular, the Western blots shown for samples 6, 24, and 39 were the most representative in our series of patients.

Figure 1
Analysis of protein tyrosine phosphorylation in normal and CLL B cells. Immunoblot analysis of cellular tyrosine-phosphorylated proteins in normal B cells, from both tonsil (T) and peripheral blood (P), and in leukemic B-CLL cells. Cells were lysed, and ...
Table 1
Biological and clinical characteristics of the patients

To gain information about the tyrosine kinase(s) responsible for the high basal B-CLL tyrosine phosphorylation, we cultured the leukemic cells obtained from CLL patients in the presence of the following inhibitors selective for different tyrosine kinases: PP2 and SU6656 (Src family) (21); piceatannol (Syk) (22); LFM-A13 (Btk) (23); tyrphostin AG490 (JAK2, JAK3) (24); tyrphostin AG1296 (platelet-derived growth factor α- and β-receptor kinases, c-kit) (25); and tyrphostin AG1478 (epidermal growth factor receptor kinase) (26). Figure Figure2A2A shows representative experiments obtained with 2 CLL samples. Only the addition of PP2 and SU6656 almost abolished cellular immunostaining for phosphorylated tyrosine, demonstrating that the abnormal B-CLL tyrosine phosphorylation was catalyzed by tyrosine kinase(s) sensitive to these inhibitors. PP2 and SU6656 are the most potent and selective inhibitors for tyrosine kinases of the Src family. As their structures are unrelated, few nonspecific effects of PP2 differed from those of SU6656. Accordingly, the combined use of these two inhibitors has been suggested for identifying the specific physiological roles of Src kinases (21). Genistein, a nonselective inhibitor of BCR-induced tyrosine phosphorylation (27), partially reduced the cellular tyrosine phosphorylation only at high concentrations, which also affected Src kinases (28) (Figure (Figure22A).

Figure 2
Effect of several inhibitors on CLL cellular tyrosine phosphorylation and tyrosine kinase activities. Freshly isolated B cells obtained from CLL patients no. 19 and no. 40 were cultured for 15 minutes without or with the indicated tyrosine kinase inhibitors. ...

To support the specificity of the Src-kinase involvement in B-CLL basal tyrosine phosphorylation, leukemic cells cultured without and with tyrosine kinase inhibitors were lysed and the tyrosine kinase activity of the cellular lysates was tested in vitro on either an Src-specific or a nonspecific substrate. The selective inhibition by PP2 and SU6656 of the kinase activity tested on the Src-specific peptide cdc2(6–20) (29) demonstrated that constitutive Src activity was indeed present in B-CLL lysates and was downmodulated by the highly selective inhibitors under these conditions (Figure (Figure2B).2B). In parallel, the finding that, among the inhibitors used, only PP2 and SU6656 abrogated the kinase activity tested on the nonspecific substrate polyGlu4Tyr (Figure (Figure2C)2C) confirmed that the total cellular tyrosine kinase activity was catalyzed by enzyme(s) belonging to the Src family.

Lyn protein level is overexpressed in CLL B cells.

Because Lyn is a member of the Src family, which is predominantly expressed in B lymphocytes and is one of the first molecules involved in transducing signals from BCR (17, 18, 3032), we evaluated the amount of Lyn protein present in leukemic B cells recovered from CLL patients with respect to normal B cells. As compared with control B lymphocytes, all 40 B-CLL samples analyzed expressed higher amounts of both p53 and p56 Lyn isoforms (Figure (Figure3A).3A). Densitometric analysis of Lyn protein content showed a B-CLL overexpression ranging between 2.5- and 5-fold greater than the amount observed in normal B cells. In contrast, Western blot analysis of Src, Fyn, c-Fgr, and Lck demonstrated that the cellular protein amounts of these Src kinases were similar in normal and leukemic cells (Figure (Figure33A).

Figure 3
Expression of Src kinase proteins and Lyn mRNA in normal and CLL B cells. (A) Immunoblot analysis of the cellular protein level of different Src kinases. The lysates obtained from normal B lymphocytes and leukemic B cells from CLL patients were analyzed ...

Lyn distribution analyzed in normal B cells by confocal microscopy (Figure (Figure3B)3B) appeared punctate and random across the plasma membrane. In contrast, a more intense and coalescent fluorescence revealed that an abnormal amount of Lyn was present in the plasma membrane of leukemic cells (Figure (Figure33B).

To determine whether the abnormally high Lyn protein expression in leukemic B cells resulted from deregulated transcription, we examined the expression of the mRNA encoding the tyrosine kinase. Similar amounts were found in leukemic and normal B lymphocytes as judged by both Northern blot analysis of 16 B-CLL samples (Figure (Figure3C)3C) and RT-PCR analysis of 40 B-CLL samples (data not shown).

Lyn is constitutively active and poorly responsive to BCR engagement in B-CLL.

Because Lyn is downregulated in unstimulated normal B cells and becomes active after BCR engagement (3032), we next investigated enzyme activity in freshly isolated and BCR-engaged B lymphocytes. Lyn activity was almost undetectable in controls, including tonsil B cells, total peripheral B lymphocytes, naive peripheral B lymphocytes, and memory peripheral B lymphocytes (Figure (Figure4A).4A). In contrast to normal B cells, the tyrosine kinase was constitutively active in leukemic cells isolated from CLL patients, as demonstrated by the remarkable kinase activity displayed in vitro by the anti-Lyn immunocomplexes (Figure (Figure4A).4A). These findings did not correlate with the expression of ZAP-70 or with the presence or absence of somatic mutations. The finding that tyrosine kinase activity was undetectable in immunoprecipitates obtained in parallel experiments with anti-Src, anti-Fyn, anti-c-Fgr, and anti-Lck antibodies (data not shown) supports the hypothesis that Lyn is the Src kinase responsible for the anomalous B-CLL cellular tyrosine phosphorylation.

Figure 4
Kinase activity of Lyn in normal and CLL B cells before and after IgM ligation. (A) Analysis of Lyn activity in unstimulated B cells. Normal cells refer to tonsil (T), total peripheral blood B cells (PT), naive peripheral blood B lymphocytes (PN), and ...

To validate the presence of the activated conformation of Lyn in freshly prepared CLL B cells, we analyzed the enzyme responsiveness to BCR engagement upon IgM ligation in 15 patients. Figure Figure4B4B shows the Lyn activity detected after BCR ligation of B lymphocytes obtained from 1 normal subject and 2 CLL patients, 1 typical patient (CLL no. 18) expressing low levels of IgM and 1 unusual case (CLL no. 29) expressing high IgM levels. Whereas IgM ligation triggered, as expected, a marked activation of Lyn (9.2-fold) in normal B cells, a poor increase in the tyrosine kinase activity was observed in leukemic cells from both patients with respect to the baseline value. Because IgM was highly expressed in normal B lymphocytes as well as in leukemic cells from patient CLL no. 29, the low Lyn activity responsiveness to IgM ligation supports the view that most of Lyn is constitutively active in resting leukemic cells and is poorly dependent on BCR engagement.

Anomalous subcellular localization of Lyn in CLL B cells.

Because Lyn protein was highly overexpressed in CLL B cells, we analyzed the subcellular localization of the tyrosine kinase in normal and leukemic B lymphocytes by means of differential ultracentrifugation. To this purpose, cells were sonicated in isotonic buffer, and cytosol and microsomes (II particulate) were separated from the other subcellular fractions (I particulate). Lyn, which is anchored to the membranes, was only particulated and mostly detected in the microsomal fraction of normal B cells, but a substantial aliquot of both enzyme isoforms (approximately 30% of the total protein) was also found in the cytosol of all of the 14 leukemic samples examined (Figure (Figure5A,5A, upper panels). Moreover, whereas the enzyme was downregulated in normal cells, both microsomal and cytosolic Lyn isolated from freshly prepared CLL B cells were constitutively active (Figure (Figure5A,5A, lower panels).

Figure 5
Subcellular localization of Lyn in normal and CLL B cells. (A) Analysis by differential ultracentrifugation. B cells were sonicated in isotonic buffer and cytosol, and microsomes (II particulate fraction, II-P) were separated from the cell debris and ...

Because Lyn is concentrated in membrane subdomains called lipid rafts in resting B lymphocytes (32, 33), we investigated the microscopic distribution of Lyn on the plasma membrane of malignant cells. Figure Figure5B5B shows that the majority of Lyn was indeed resident in lipid rafts in normal B cells as judged by its colocalization with GM1 ganglioside. In contrast, Lyn was uniformly distributed all over the cell surface in leukemic lymphocytes.

To assess whether mutation(s) of the Lyn protein could be responsible for the anomalous properties of the tyrosine kinase in CLL B cells, we sequenced the Lyn cDNA of four CLL patients. No mutation in the Lyn sequence was observed in the leukemic cells as compared with the normal cDNA sequence (data not shown).

Lyn is involved in the defective apoptosis of leukemic cells.

Next we addressed the question of whether the upregulation of Lyn expression and activity plays a role in the defective apoptosis of leukemic cells. To this purpose, we investigated the relationship between Lyn and the cell survival of malignant lymphocytes in different experimental conditions. We analyzed leukemic cells cultured either with dexamethazone (Dex) and cyclosporin A (CsA), which are known to induce apoptosis of human lymphocytes (34, 35), or with PP2 and SU6656, which are selective inhibitors of Lyn (21). In preliminary experiments, the dose response of the B-CLL cell cultures to the different compounds was analyzed and the concentration required to induce death in 50% of leukemic cells (IC50) was determined. The IC50 values for PP2, SU6656, EGCG, CsA, and Dex were 10 μM, 7.5 μM, 10 μM, 7 μM, and 10 μM, respectively. The results obtained with 1 representative CLL sample are reported in Figure Figure6.6. When leukemic cells were cultured in the presence of CsA or Dex, a marked increase in apoptosis was observed as compared with cells cultured in medium alone, as demonstrated by annexin V staining (Figure (Figure6)6) and caspase activation (Figure (Figure7A)7A) analyses. Interestingly, leukemic cell apoptosis correlated with a great decrease in both basal activity and amount of Lyn (Figure (Figure7B).7B). Exposure of leukemic cells to PP2 and SU6656 caused both the expected inhibition of the overexpressed Lyn activity (Figure (Figure7B)7B) and marked cell apoptosis (Figures (Figures66 and and7A).7A). To confirm the specific involvement of Lyn in cell apoptosis, we performed control experiments using PP3, an inactive analog of PP2. Its addition in cell cultures did not induce Lyn inhibition or cell apoptosis (data not shown). The green tea constituent epigallocatechin-3-gallate (EGCG) acts as a cancer-preventive agent because of its remarkable ability to induce apoptosis in cancer cells by caspase activation (36). Because we have recently shown that EGCG inhibits Lyn both in vitro and in cells (37), we analyzed the effect of this catechin on B-CLL cell cultures. The induced cell apoptosis (Figures (Figures66 and and7A)7A) and the tyrosine kinase inhibition (Figure (Figure7B)7B) caused by the presence of EGCG confirm the relationship between high Lyn activity and abnormal survival and accumulation of these leukemic cells.

Figure 6
Effect of different compounds on the apoptosis of CLL B cells. Leukemic cells were cultured for 24 hours alone or in the presence of CsA (8 μM), Dex (10 μM), PP2 (10 μM), SU6656 (10 μM), or EGCG (10 μM), and cell ...
Figure 7
Effect of different compounds on caspase and Lyn activities of CLL B cells. Leukemic lymphocytes were cultured without or with drugs as described in Figure Figure6.6. (A) Caspase activity was analyzed by Western blotting with an antibody against ...


This study was designed to investigate the molecular determinants that are responsible for the prolonged survival and accumulation of leukemic cells in patients with B-CLL. To address this question, we analyzed the Src kinase Lyn, a protein that plays a crucial role in transducing survival or apoptosis signals following BCR triggering. The analysis of malignant B lymphocytes obtained from the peripheral blood of 40 CLL patients demonstrated that the tyrosine kinase Lyn displays anomalous properties that contribute to the pathology of these leukemic cells.

In particular, we found that Lyn expression detected in freshly isolated leukemic cells obtained from all CLL patients were 2.5- to 5-fold higher than in normal B lymphocytes, suggesting that the overexpression of this protein represents a peculiar property of these malignant cells. The evidence that Lyn mRNA level was comparable in normal and neoplastic B cells demonstrates that the anomalous protein expression was not related to differences in gene transcription and/or mRNA stability. A possible hypothesis to explain the different Lyn protein expression between leukemic and normal B cells might be represented by a deregulation in protein turnover. In this context, the defective apoptosis of B-CLL lymphocytes has been related to a deregulation of the ubiquitin-proteasome system pathway (38), which has been claimed to account for Lyn degradation (39).

By means of confocal microscopy and differential ultracentrifugation analyses, we observed that Lyn protein was abnormally distributed in malignant cells as compared with normal B cells, in 2 main respects. First, the immunolocalization at the plasma membrane of leukemic cells appeared more intense and coalescent, consistent with a different distribution of Lyn across the membrane subdomains; whereas Lyn was concentrated in membrane lipid rafts in normal B cells, the enzyme was present all over the cell surface membrane in leukemic cells. Second, the tyrosine kinase was also detected in the cytosol of the malignant B cells. The release of Lyn into the cytosol following caspase-dependent cleavage of the tyrosine kinase at its N terminus has been described as a general mechanism in hematopoietic cells during BCR-induced apoptosis (40). In contrast, the cytosolic localization of Lyn in unstimulated cells is a property unique to freshly isolated B-CLL malignant lymphocytes. Our analyses demonstrated that both Lyn isoforms were resident in the soluble fraction of the leukemic cells. Moreover, the finding that the Lyn c-DNA of 4 CLL patients did not contain any mutation(s) compared to the sequence of the normal enzyme (data not shown) ruled out the hypothesis that genetic alteration might be responsible for the anomalous properties of Lyn. Whether the defective N-terminal myristylation/palmitoylation of the kinase or merely the exceedingly high kinase concentration is responsible for the generation of soluble Lyn remains an open question. It is noteworthy that the cleaved form of Lyn generated by caspases and relocated to the cytosol during BCR-induced cell death acts as a negative regulator of apoptosis in the B lymphoma cell line (41). The findings that CLL B cells contained a cytosolic Lyn fraction and were defective in programmed cell death suggest that the tyrosine phosphorylation of specific cytosolic targets might account, at least in part, for cell resistance to apoptosis.

The activity of Lyn is critically regulated through its C-terminal Tyr507, which is phosphorylated by the tyrosine kinase Csk and dephosphorylated by the receptor tyrosine phosphatase CD45. In resting B lymphocytes, Lyn is present in its inactive conformation, a result of Csk phosphorylation of Tyr507, which gives rise to an intramolecular association of the phosphorylated residue with Lyn’s own SH2 domain (4244). Analysis of the Lyn activation state in freshly isolated leukemic cells from CLL patients showed that most membrane and soluble enzyme displayed a constitutive activity that was independent of BCR engagement. This finding accounts for the abnormally high basal tyrosine phosphorylation observed in these cells, which was completely abrogated by the highly selective Src inhibitors PP2 and SU6656 and unaffected by inhibitors selective for other receptor and nonreceptor tyrosine kinases. Because Csk, unlike Lyn, was similarly expressed in normal and CLL B cells (data not shown), the constitutive activity of Lyn could be due to the fact that the amount of Csk is insufficient to phosphorylate and downregulate the overexpressed Lyn substrate. However, it is likely that other factors are responsible for the presence of the active form of Lyn in freshly prepared CLL B cells, first among which might be the dephosphorylation of Lyn phosphorylated at Tyr507 by the tyrosine phosphatase CD45, an abundant membrane protein that, in normal B cells, has access to Lyn only after its migration to lipid rafts induced by BCR engagement (32). Furthermore, the high concentration of the Lyn protein in CLL B cells could promote the kinase intermolecular autophosphorylation at Tyr396, which in turn induces Lyn activation (29, 43).

In normal B lymphocytes, BCR engagement triggers a great increase in Lyn activity compared with the low baseline levels. By contrast, in leukemic cells from B-CLL patients, the basal Lyn activity was already high, and IgM ligation induced only a slight increase in the kinase activity. The finding that Lyn was constitutively active in these cells independently of BCR engagement might suggest that upregulated Lyn is partially unrelated to BCR signaling. Because Ig expression is anomalous in CLL cells, an alternative explanation rests on a constitutive BCR activation ongoing in the leukemic cells due to Ig autoreactivity. In any event, the constitutive Lyn activation in B-CLL correlates with extended cell survival and defective apoptosis even in the absence of specific stimuli. In fact, the inhibition of Lyn activity obtained by treating the leukemic cells with specific inhibitors of the tyrosine kinase is sufficient to restore cell apoptosis, providing a correlation between high basal Lyn activity and defects in the induction of the programmed cell death in CLL B cells. This finding is validated by treatment of CLL B cells with Dex, CsA, and EGCG, which strongly decreased the basal activity of Lyn and increased leukemic cell apoptosis, suggesting that the apoptotic effect of these drugs is mediated by Lyn downregulation. Our hypothesis is also consistent with other reports showing that either Lyn activation in hematopoietic cell lineages (4547) or active Lyn overexpression in epithelial cells plays a crucial role in preventing cell apoptosis (48). Accordingly, a 3-fold increase in apoptotic pre-B cells was observed in mice deficient in the expression of the Src kinases Lyn, Fyn, and Blk as compared with wild-type mice (49). These data might have clinical relevance because they identify the Src kinase Lyn as a potential target for drugs capable of inducing apoptosis in B-CLL leukemic cells.


Patients, cell separation, and culture conditions.

After obtaining their informed consent, we obtained peripheral blood from 40 untreated patients diagnosed with B-CLL as confirmed by clinical, pathologic, and flow cytometry criteria (1). Patient characteristics are reported in Table Table1.1. PBMCs of the patients were isolated by density-gradient centrifugation over Ficoll-Hypaque, as previously reported (50). B cells were purified from PBMCs by removing T cells by rosetting method with sheep erythrocytes and monocytes by adherence to plastic surfaces, as previously reported (51). As assessed by flow cytometry, the content of CD19+ B cells was greater than 95% in all samples.

Untouched peripheral blood B cells were isolated from PBMCs of 5 normal donors by negative selection using a B cell isolation kit and MACS separation columns (Milteny Biotec). Purified tonsillar B cells were obtained from 3 tonsils as previously described (52). The purity of the obtained peripheral blood and tonsillar B cells was at least 95% (CD19+), as assessed by flow cytometry. For selected experiments, peripheral blood B cells were enriched for naive and memory B cells according to their reactivity to CD27. Briefly, purified peripheral blood B lymphocytes were incubated with CD27 MicroBeads (Milteny Biotec) and were fractionated into CD19+/CD27+ (memory B cells) and CD19+/CD27 (naive B cells), with a purity greater than 98%.

Purified B cells (2 × 106 cells/ml) were cultured in RPMI-1640 medium (Sigma-Aldrich) supplemented with 10% heated inactivated fetal calf serum (ICN Flow), 2 mM L-glutamine, 100 U/ml penicillin, and 100 μg/ml streptomycin in 24-well plates (Costar), at 37°C in a humidified atmo-sphere containing 5% CO2. In a different experiment, cells were incubated several times without or with goat anti-human IgM F(ab′)2 (10 μg/ml) (Caltag Laboratories).

Analysis of cellular tyrosine phosphorylation and tyrosine kinase activity.

Cells (5 × 105 for each assay) were preincubated for 15 minutes in the absence or presence of PP2 (7.5 μM), SU6656 (7.5 μM), piceatannol (15 μM), LFM-A13 (20 μM), AG490 (20 μM), AG1296 (20 μM), AG1478 (20 μM), or genistein (20 μM) (Calbiochem). Cells were resuspended and rapidly lysed in buffer A (62 mM Tris/HCl buffer, pH 6.8, containing 5% glycerol, 0.5% SDS, and 0.5% β-mercaptoethanol). Samples were then subjected to SDS/PAGE (10% gels), transferred to nitrocellulose membranes, and immunostained with anti-phosphotyrosine (PY-20) monoclonal antibody (ICN Biotechnology) using an enhanced chemiluminescent detection system (ECL; Amersham Pharmacia Biotech).

To analyze cellular tyrosine kinase activity, cells (4 × 105 for each assay), preincubated with or without tyrosine kinase inhibitors as described above, were lysed by adding 0.5% Triton X-100 and phosphatase and protease inhibitor cocktails in a 25-μl volume for 15 minutes. The tyrosine kinase activity was then tested in 50 μl of phosphorylation medium containing 50 mM Tris/HCl, pH 7.5, 10 mM MnCl2, 30 μM [γ32P]ATP (Amersham Pharmacia Biotech) (specific activity 1,000 cpm/pmol), 200 μM sodium orthovanadate, and either 1 mg/ml random polymer polyGlu4Tyr (Sigma-Aldrich) or 200 μM cdc2(6–20) peptide (29) (kindly provided by O. Marin, University of Padova, Padova, Italy) used as exogenous substrates. After 10 minutes of incubation at 30°C, the reactions were stopped and the samples were loaded on SDS/PAGE. Substrate 32P-phosphorylation was quantified on a Packard InstantImager.

Analysis of cellular Src kinase expression.

Cells were lysed and immunostained with anti-Lyn, anti-Src, anti-Fyn, anti-c-Fgr, and anti-Lck antibodies (Santa Cruz Biotechnology) as described above. The blots were then stripped and reprobed with β-actin antibody (Santa Cruz Biotechnology). The protein expression of the Src kinases was quantified by densitometric analysis using an ImagerMaster VDS instruments (Amersham Pharmacia Biotech).

IP and in vitro kinase activity of different Src kinases.

In order to analyze total cellular activity of the different Src kinases, cells (2 × 106 for each assay) were resuspended and lysed for 1 hour at 4°C in 450 μl of buffer B containing 20 mM Tris/HCl, pH 7.5, 10% glycerol, 1% Triton X-100, 1 mM EDTA, 50 mM NaCl, 1 mM sodium orthovanadate, and protease inhibitor cocktail. After centrifugation, the supernatants were incubated for 2 hours at 4°C with the appropriate Src kinase antibody bound to protein A–Sepharose. The immunocomplexes were washed 3 times by centrifugation and resuspended in buffer C (50 mM Tris/HCl, pH 7.5, containing phosphatases and protease inhibitor cocktails). The pellets were solubilized in 30 μl of buffer C for kinase activity, and, as a control, 5 μl were supplemented with 20 μl of buffer A lacking β-mercaptoethanol, loaded on SDS/PAGE, and immunostained with the appropriate Src kinase antibody.

To test the kinase activity of IP, 20 μl of immunocomplexes were incubated in 30 μl of the phosphorylation medium described above using 200 μM cdc2(6–20) peptide as a substrate. After 10 minutes of incubation at 30°C, the samples were loaded on SDS/PAGE and analyzed for both peptide 32P-phosphorylation (see above) and immunostaining with the appropriate Src kinase antibody.

Lyn subcellular localization.

Approximately 4 × 106 cells were sonicated in 400 μl of isotonic buffer containing 50 mM Tris/HCl (pH 7.5), 0.25 M saccharose, 1 mM orthovanadate, and protease inhibitor cocktail (Boehringer) and centrifuged at 10,000 g for 10 minutes in order to separate the particulate fraction containing cell debris, nuclei, and other cellular particles (pellet I). The supernatant was further centrifuged at 100,000 g for 1 hour to separate the cytosol from the microsomes (pellet II). The pellets were resuspended in 400 μl of buffer B, and 20 μl of the different fractions were loaded on SDS/PAGE, blotted, and immunostained with either anti-Lyn antibody or the antibodies specific for the following distribution control markers: Complex II (Molecular Probes), SERCA2 (Sarco(endo)plasmic Reticulum Ca2+-ATPase) (Affinity Bioreagents), and CD79b (Santa Cruz Biotechnology). The residual amount of the different fractions was used to perform Lyn immunoprecipitation and in vitro kinase assay as described in the previous paragraph.

Flow cytometry analysis.

The following monoclonal antibodies were used for direct immunofluorescence staining: CD3–FITC, CD19–FITC (BD), anti-IgM–FITC, anti-IgD–FITC (DAKO), CD5–PE, CD16–PE, CD23–PE, CD38–PE, and CD79b–PE (BD Biosciences — Pharmingen). Cells were scored using a FACScalibur analyzer (BD Biosciences — Immunocytometry Systems) and data processed using the CellQuest software (BD).

Apoptosis assays.

B cells, incubated with or without CsA (8 μM), Dex (10 μM) (Sigma-Aldrich), PP2 (10 μM), SU6656 (10 μM), or EGCG (10 μM) (Calbiochem) for 24 hours, were collected by centrifugation and washed once with PBS. Exposure of phosphatidylserine residues was quantified by surface annexin V staining using the protocol outlined in the Bender Kit (Bender Medsystems). A total of 1 × 106 cells were resuspended in 200 μl of binding buffer (10 mM HEPES, pH 7.4, 140 mM NaCl, and 5 mM CaCl2) and then incubated with 0.5 μg/ml of annexin V–FITC for 15 minutes in the dark. Cells were washed again and resuspended in binding buffer. Then 5 μl (20 μg/ml) of propidium iodide (PI) was added to each sample prior to flow cytometric analysis (FACScalibur analyzer; BD Biosciences — Immunocytometry Systems). Ten thousand cells per sample were acquired with the use of CellQuest software (BD), and data were analyzed by plotting on an annexin V–PI logarithmic scattergram.

Cleavage of the broad caspase substrate PARP was determined by Western blot analysis. A total of 0.5 × 106 cells were resuspended and rapidly lysed in buffer A (62 mM Tris/HCl, pH 6.8, 5% glycerol, 0.5% SDS, and 0.5% β-mercaptoethanol). Samples were then subjected to SDS/PAGE (10% gels), transferred to nitrocellulose membranes, and immunostained with PARP polyclonal antibody (Cell Signaling).

Confocal microscopy analysis.

Membrane lipid raft aggregation or patching was performed. B lymphocytes were incubated with unlabeled cholera toxin β subunit (Sigma-Aldrich), which binds to the GM1 ganglioside, a component of lipid raft membrane microdomains (53). Following 30 minutes of incubation at room temperature, the cells were washed twice with PBS and were then incubated with rabbit anti-cholera toxin B for 30 minutes. For patching, a third-step incubation with anti-rabbit Texas Red–conjugated for 30 minutes on ice was performed. Then B lymphocytes, at a concentration of 0.4 × 106/ml, were mounted, in a volume of 50 μl/well, on poly-L-lysine–coated slides (Poliscience Inc.). An equal volume of 4% paraformaldehyde was added for 10 minutes at room temperature to fix the cells. The fixed cells were then washed twice with PBS and permeabilized with 0.1% Triton X-100 for 4 minutes. Before staining, nonspecific protein binding was blocked by incubating slides for 30 minutes in 1% BSA. Cells were then stained with 1/50 diluted mouse monoclonal IgG2a anti-Lyn (Santa Cruz Biotechnology) for 15 minutes in the dark, washed, and stained with FITC-conjugated secondary Ig (Dako). The specificity of staining was controlled by using isotype-control antibodies, followed by the appropriate fluorescent secondary antibodies. Background staining with control antibodies was routinely compared with positively stained cells and was not visible using identical acquisition settings. Slides were mounted with coverslips and fluorescence was detected using a Biorad confocal microscope equipped with a fluorescence filter set for excitation at 488 nm.

RT-PCR analysis of Lyn transcripts.

Total RNA was extracted from 4–10 × 106 purified B cells using the RNeasy Mini Kit (Qiagen), in accordance with the manufacturer’s instructions. First-strand cDNA was synthesized from 1 μg of total RNA in a total volume of 20 μl using oligo(dT) primers and the Promega Reverse Transcription System (Promega Corp.), in accordance with the manufacturer’s instructions. For human Lyn, 2 μl of cDNA were amplified in a total volume of 50 μl in the presence of 20 pM of the following primers: 5′-GGAGGAGCCCATTTACATCATCA-3′ and 5′-AGTTCTCCACACGGGGCATCC-3′. This amplified a band of 470 bp. The reaction mixture consisted of 1.5 mM MgCl2, 500 mM KCl, 200 μM dNTPs, and 2.5 U Taq polymerase (Applied Biosystems). Reaction conditions were 1 minute of denaturation at 94°C, 1 minute of annealing at 66°C, and 3 minutes of extension at 72°C for 25 cycles followed by final extension of 7 minutes at 72°C. For β-actin, 2 μl of cDNA were amplified in a total volume of 50 μl in the presence of 20 pM of the following primers: 5′-GTGGGGCGCCCCAGGCACCA and 5′-GAAATCGTGCGTGACATTAAGGAG-3′. This amplified a product of 540 bp. The reaction mixture was similar to that used for human Lyn. Reaction conditions were 30 seconds of denaturation at 94°C, 30 seconds of annealing at 57°C, and 40 seconds of extension of 72°C for 25 cycles followed by a final extension of 7 minutes at 72°C. Aliquots of PCR products were separated by electrophoresis on 2% agarose gel and visualized by ethidium bromide staining.

Northern blot analysis of Lyn transcripts.

B cell total RNA (15 μg) was separated on a 1% formaldehyde-agarose gel, stained with ethidium bromide, and transferred to a nylon membrane (Hybond-N+, Amersham Pharmacia Biotech) using standard protocols. The membrane was hybridized with 32P-labeled lyn probe derived from RT-PCR amplification product corresponding to nucleotides 1,110–1,859 in accordance with the standard hybridization protocol. To ensure the quality and quantity of RNA analyzed, the blot was washed and reprobed for β-actin expression. The density of the bands was analyzed on a Packard InstantImager.

Sequencing analysis of Lyn cDNA.

Total RNA was prepared from purified B cells of 4 patients with B-CLL with the RNeasy Mini kit (Qiagen). One microgram of total RNA was reverse-transcribed to cDNA using the Promega Reverse Transcription System (Promega Corp.). Then, to amplify the entire coding region of the Lyn gene, cDNA was amplified by PCR using the following primer pairs: 5′-GAACTCAAGTCACCGTGGAGC-3′ and 5′-TCCGGGTGGATGCCATCATAG-3′; 5′-AGATCCAGAGGAACAAGGAGAC-3′ and 5′-CTAATAAGGAAAGCTCCAGCGC-3′; 5′-CGCAGAAAGGCAGCTTTTGGC-3′ and 5′-GAGCCTCACGAGCTTGTCATG-3′; and 5′-AGGTGGCTGTGAAAACCCTG-3′ and 5′-AAATGGACGGGTCTCCCTGT-3′. Each of the amplified fragments was purified from 2% agarose gel with QIAquick Gel Extraction Kit (Qiagen), and direct sequencing was carried out using the ABI Prism Big Dye Terminator Cycle Sequencing Kit (Applied Biosystems) and an ABI PRISM 310 DNA Sequencer (Applied Biosystems) with the same primers as used for PCR. All sequencing reactions were performed in both forward and reverse directions. Sequences were compared to the published human Lyn mRNA sequence (GenBank accession number M16038).

Statistical analysis.

Statistical analysis was performed using Wilcoxon matched pairs test. Data are reported as median, lower and upper quartile, and minimum and maximum. P values less than 0.05 were considered statistically significant.


The authors wish to thank Martin Donach for his help in the preparation of the manuscript. This work was supported by the Italian Association for Cancer Research, Milan, Italy; Ministero dell’Istruzione, dell’Università e della Ricerca (FIRB-2001 and PRIN-2002), Rome, Italy; and the Ministero della Salute, Rome, Italy.


Antonella Contri and Anna Maria Brunati contributed equally to this work.

Nonstandard abbreviations used: B-CLL, B cell chronic lymphocytic leukemia; BCR, B cell receptor; CLL, chronic lymphocytic leukemia; CsA, cyclosporin A; Dex, dexamethazone; EGCG, epigallocatechin-3-gallate; ITAM, immunoreceptor tyrosine-based activation motif; PI, propidium iodide.

Conflict of interest: The authors have declared that no conflict of interest exists.


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