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A first-draft human protein-interaction map
Ben Lehner, Andrew G Fraser
Genome Biol. 2004; 5(9): R63. Published online 2004 August 13. doi: 10.1186/gb-2004-5-9-r63
PMCID:
PMC522870
Abstract Full Text PDF–227K Supplementary Material
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 Is Cited by the Following 63 Articles in this Archive:
Prediction of Body Fluids where Proteins are Secreted into Based on Protein Interaction Network
Le-Le Hu, Tao Huang, Yu-Dong Cai, Kuo-Chen Chou
PLoS One. 2011; 6(7): e22989. Published online 2011 July 29. doi: 10.1371/journal.pone.0022989
PMCID:
PMC3146524
Abstract Full Text PDF–160K Supplementary Material
Bio::Homology::InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping
Giuseppe Gallone, T Ian Simpson, J Douglas Armstrong, Andrew P Jarman
BMC Bioinformatics. 2011; 12: 289. Published online 2011 July 18. doi: 10.1186/1471-2105-12-289
PMCID:
PMC3161927
Abstract Full Text PDF–1.0M Supplementary Material
Predicting Protein Phenotypes Based on Protein-Protein Interaction Network
Lele Hu, Tao Huang, Xiao-Jun Liu, Yu-Dong Cai
PLoS One. 2011; 6(3): e17668. Published online 2011 March 10. doi: 10.1371/journal.pone.0017668
PMCID:
PMC3053377
Abstract Full Text PDF–201K Supplementary Material
Global protein interactome exploration through mining genome-scale data in Arabidopsis thaliana
Feng Xu, Guang Li, Chen Zhao, Yuhua Li, Peng Li, Jian Cui, Youping Deng, Tieliu Shi
BMC Genomics. 2010; 11(Suppl 2): S2. Published online 2010 November 2. doi: 10.1186/1471-2164-11-S2-S2
PMCID:
PMC2975419
Abstract Full Text PDF–637K Supplementary Material
FragViz: visualization of fragmented networks
Miha Štajdohar, Minca Mramor, Blaž Zupan, Janez Demšar
BMC Bioinformatics. 2010; 11: 475. Published online 2010 September 22. doi: 10.1186/1471-2105-11-475
PMCID:
PMC2955700
Abstract Full Text PDF–1.7M
Viral Organization of Human Proteins
Stefan Wuchty, Geoffrey Siwo, Michael T. Ferdig
PLoS One. 2010; 5(8): e11796. Published online 2010 August 25. doi: 10.1371/journal.pone.0011796
PMCID:
PMC2932736
Abstract Full Text PDF–579K Supplementary Material
Protein-protein interaction map is a key gateway into liver regeneration
Chao Xie, Jin Gao, Run-Zhi Zhu, Yun-Sheng Yuan, Hong-Lin He, Qiu-Shi Huang, Wei Han, Yan Yu
World J Gastroenterol. 2010 July 28; 16(28): 3491–3498. Published online 2010 July 28. doi: 10.3748/wjg.v16.i28.3491
PMCID:
PMC2909548
Abstract Full Text PDF–1023K
Inferring modules from human protein interactome classes
Elisabetta Marras, Antonella Travaglione, Gautam Chaurasia, Matthias Futschik, Enrico Capobianco
BMC Syst Biol. 2010; 4: 102. Published online 2010 July 23. doi: 10.1186/1752-0509-4-102
PMCID:
PMC2923113
Abstract Full Text PDF–16M Supplementary Material
Response of the mosquito protein interaction network to dengue infection
Xiang Guo, Yao Xu, Guowu Bian, Andrew D Pike, Yan Xie, Zhiyong Xi
BMC Genomics. 2010; 11: 380. Published online 2010 June 16. doi: 10.1186/1471-2164-11-380
PMCID:
PMC3091628
Abstract Full Text PDF–1.9M Supplementary Material
Evaluation of the collaborative network of highly correlating skin proteins and its change following treatment with glucocorticoids
Uwe Klinge, Nicolette Farman, Anette Fiebeler
Theor Biol Med Model. 2010; 7: 16. Published online 2010 May 28. doi: 10.1186/1742-4682-7-16
PMCID:
PMC2901312
Abstract Full Text PDF–1.1M Supplementary Material
Reconstruction of Gene Regulatory Modules in Cancer Cell Cycle by Multi-Source Data Integration
Yuji Zhang, Jianhua Xuan, Benildo G. de los Reyes, Robert Clarke, Habtom W. Ressom
PLoS One. 2010; 5(4): e10268. Published online 2010 April 21. doi: 10.1371/journal.pone.0010268
PMCID:
PMC2858157
Abstract Full Text PDF–1.1M Supplementary Material
Building and analyzing protein interactome networks by cross-species comparisons
Amy M Wiles, Mark Doderer, Jianhua Ruan, Ting-Ting Gu, Dashnamoorthy Ravi, Barron Blackman, Alexander JR Bishop
BMC Syst Biol. 2010; 4: 36. Published online 2010 March 30. doi: 10.1186/1752-0509-4-36
PMCID:
PMC2859380
Abstract Full Text PDF–2.1M Supplementary Material
Cardiovascular Networks: Systems-Based Approaches to Cardiovascular Disease
Aldons J. Lusis, James N. Weiss
Circulation. Author manuscript; available in PMC 2010 March 10.
Published in final edited form as: Circulation. 2010 January 5; 121(1): 157–170. doi: 10.1161/CIRCULATIONAHA.108.847699
PMCID:
PMC2836123
Full Text PDF–4.2M
Network-based Identification of Novel Cancer Genes
Gabriel Östlund, Mats Lindskog, Erik L. L. Sonnhammer
Mol Cell Proteomics. 2010 April; 9(4): 648–655. Published online 2009 December 3. doi: 10.1074/mcp.M900227-MCP200
PMCID:
PMC2860235
Abstract Full Text Supplementary Material
High-Throughput Discovery and Characterization of Fetal Protein Trafficking in the Blood of Pregnant Women
Jill L. Maron, Gil Alterovitz, Marco Ramoni, Kirby L. Johnson, Diana W. Bianchi
Proteomics Clin Appl. Author manuscript; available in PMC 2010 December 1.
Published in final edited form as: Proteomics Clin Appl. 2009 December 1; 3(12): 1389–1396. doi: 10.1002/prca.200900109
PMCID:
PMC2825712
Abstract Full Text PDF–2.0M Supplementary Material
Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network
Gabriel Markson, Christina Kiel, Russell Hyde, Stephanie Brown, Panagoula Charalabous, Anja Bremm, Jennifer Semple, Jonathan Woodsmith, Simon Duley, Kourosh Salehi-Ashtiani, Marc Vidal, David Komander, Luis Serrano, Paul Lehner, Christopher M. Sanderson
Genome Res. 2009 October; 19(10): 1905–1911. doi: 10.1101/gr.093963.109
PMCID:
PMC2765280
Abstract Full Text PDF–425K
Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network
Bolan Linghu, Evan S Snitkin, Zhenjun Hu, Yu Xia, Charles DeLisi
Genome Biol. 2009; 10(9): R91. Published online 2009 September 3. doi: 10.1186/gb-2009-10-9-r91
PMCID:
PMC2768980
Abstract Full Text PDF–676K Supplementary Material
Local Network Topology in Human Protein Interaction Data Predicts Functional Association
Hua Li, Shoudan Liang
PLoS One. 2009; 4(7): e6410. Published online 2009 July 29. doi: 10.1371/journal.pone.0006410
PMCID:
PMC2713831
Abstract Full Text PDF–800K Supplementary Material
DASMIweb: online integration, analysis and assessment of distributed protein interaction data
Hagen Blankenburg, Fidel Ramírez, Joachim Büch, Mario Albrecht
Nucleic Acids Res. 2009 July 1; 37(Web Server issue): W122–W128. Published online 2009 July 1. doi: 10.1093/nar/gkp438
PMCID:
PMC2703953
Abstract Full Text PDF–2.6M
Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression
Stefanie De Bodt, Sebastian Proost, Klaas Vandepoele, Pierre Rouzé, Yves Van de Peer
BMC Genomics. 2009; 10: 288. Published online 2009 June 29. doi: 10.1186/1471-2164-10-288
PMCID:
PMC2719670
Abstract Full Text PDF–1.2M Supplementary Material
DASMI: exchanging, annotating and assessing molecular interaction data
Hagen Blankenburg, Robert D. Finn, Andreas Prlić, Andrew M. Jenkinson, Fidel Ramírez, Dorothea Emig, Sven-Eric Schelhorn, Joachim Büch, Thomas Lengauer, Mario Albrecht
Bioinformatics. 2009 May 15; 25(10): 1321–1328. Published online 2009 May 5. doi: 10.1093/bioinformatics/btp142
PMCID:
PMC2677739
Abstract Full Text PDF–496K Supplementary Material
Tissue specificity and the human protein interaction network
Alice Bossi, Ben Lehner
Mol Syst Biol. 2009; 5: 260. Published online 2009 April 7. doi: 10.1038/msb.2009.17
PMCID:
PMC2683721
Abstract Full Text PDF–3.8M Supplementary Material
Protein-protein interaction as a predictor of subcellular location
Chang Jin Shin, Simon Wong, Melissa J Davis, Mark A Ragan
BMC Syst Biol. 2009; 3: 28. Published online 2009 February 25. doi: 10.1186/1752-0509-3-28
PMCID:
PMC2663780
Abstract Full Text PDF–1.1M Supplementary Material
CO-EXPRESSION AMONG CONSTITUENTS OF A MOTIF IN THE PROTEIN-PROTEIN INTERACTION NETWORK
NITIN BHARDWAJ, HUI LU
J Bioinform Comput Biol. Author manuscript; available in PMC 2009 October 29.
Published in final edited form as: J Bioinform Comput Biol. 2009 February; 7(1): 1–17.
PMCID:
PMC2770376
Abstract Full Text PDF–1.7M Supplementary Material
UniHI 4: new tools for query, analysis and visualization of the human protein–protein interactome
Gautam Chaurasia, Soniya Malhotra, Jenny Russ, Sigrid Schnoegl, Christian Hänig, Erich E. Wanker, Matthias E. Futschik
Nucleic Acids Res. 2009 January; 37(Database issue): D657–D660. Published online 2009 January. doi: 10.1093/nar/gkn841
PMCID:
PMC2686569
Abstract Full Text PDF–2.7M
An empirical framework for binary interactome mapping
Kavitha Venkatesan, Jean-François Rual, Alexei Vazquez, Ulrich Stelzl, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Martina Zenkner, Xiaofeng Xin, Kwang-II Goh, Muhammed A Yildirim, Nicolas Simonis, Kathrin Heinzmann, Fana Gebreab, Julie M Sahalie, Sebiha Cevik, Christophe Simon, Anne-Sophie de Smet, Elizabeth Dann, Alex Smolyar, Arunachalam Vinayagam, Haiyuan Yu, David Szeto, Heather Borick, Amélie Dricot, Niels Klitgord, Ryan R Murray, Chenwei Lin, Maciej Lalowski, Jan Timm, Kirstin Rau, Charles Boone, Pascal Braun, Michael E Cusick, Frederick P Roth, David E Hill, Jan Tavernier, Erich E Wanker, Albert-László Barabási, Marc Vidal
Nat Methods. Author manuscript; available in PMC 2010 May 18.
Published in final edited form as: Nat Methods. 2009 January; 6(1): 83–90. Published online 2008 December 7. doi: 10.1038/nmeth.1280
PMCID:
PMC2872561
Abstract Full Text PDF–2.0M Supplementary Material
The prediction of protein-protein interaction networks in rice blast fungus
Fei He, Yan Zhang, Hao Chen, Ziding Zhang, You-Liang Peng
BMC Genomics. 2008; 9: 519. Published online 2008 November 2. doi: 10.1186/1471-2164-9-519
PMCID:
PMC2601049
Abstract Full Text PDF–1.1M Supplementary Material
Interspecies data mining to predict novel ING-protein interactions in human
Paul MK Gordon, Mohamed A Soliman, Pinaki Bose, Quang Trinh, Christoph W Sensen, Karl Riabowol
BMC Genomics. 2008; 9: 426. Published online 2008 September 18. doi: 10.1186/1471-2164-9-426
PMCID:
PMC2565686
Abstract Full Text PDF–2.3M Supplementary Material
Deducing topology of protein-protein interaction networks from experimentally measured sub-networks
Ling Yang, Thomas M Vondriska, Zhangang Han, W Robb MacLellan, James N Weiss, Zhilin Qu
BMC Bioinformatics. 2008; 9: 301. Published online 2008 July 3. doi: 10.1186/1471-2105-9-301
PMCID:
PMC2474618
Abstract Full Text PDF–472K Supplementary Material
A map of human protein interactions derived from co-expression of human mRNAs and their orthologs
Arun K Ramani, Zhihua Li, G Traver Hart, Mark W Carlson, Daniel R Boutz, Edward M Marcotte
Mol Syst Biol. 2008; 4: 180. Published online 2008 April 15. doi: 10.1038/msb.2008.19
PMCID:
PMC2387231
Abstract Full Text PDF–4.7M Supplementary Material
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