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Quorum Quenching: Enzymatic Disruption of N-Acylhomoserine Lactone-Mediated Bacterial Communication in Burkholderia thailandensis Bacteriology Division, United States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Maryland *Mailing address: Bacteriology Division, USAMRIID, 1425 Porter St., Fort Detrick, MD 21702. Phone: (301) 619-8332. Fax: (301) 619-8351. E-mail: Ricky.Ulrich/at/AMEDD.ARMY.MIL. Received April 1, 2004; Accepted May 13, 2004. This article has been cited by other articles in PMC.Abstract Many species of gram-negative bacteria communicate by synthesizing, secreting, and responding to N-acylhomoserine lactones (AHLs), a mechanism termed quorum sensing. Several investigations have characterized numerous AHL-degrading enzymes (AiiA lactonases) encoded by environmental isolates of Bacillus spp. The Burkholderia thailandensis quorum system is comprised of at least three AHL synthases (AHSs) and five transcriptional regulators belonging to the LuxIR class of proteins. Expression of the Bacillus anthracis (Ames strain) AiiA lactonase in B. thailandensis completely abolished the accumulation of N-decanoylhomoserine lactone (C10-HSL) and N-octanoylhomoserine lactone (C8-HSL), reduced N-hexanoylhomoserine lactone (C6-HSL) levels, altered both swarming and twitching motility, caused a significant increase in generation time, and affected carbon metabolism. In contrast, heterologous expression of the Bacillus cereus strain A24 AiiA lactonase in B. thailandensis reduced the concentrations of C6-HSL, C8-HSL, and C10-HSL to nondetectable levels; altered both swarming and twitching motility; and caused fluctuations in carbon utilization. Individual disruption of the B. thailandensis AHSs, specifically disruption of the btaI1 and btaI3 genes, which encode the proteins that direct the synthesis of C8-HSL and C6-HSL, respectively, caused the hyper-beta-hemolysis of sheep erythrocytes on blood agar plates. In contrast, AHL cleavage in B. thailandensis by the Bacillus AiiA lactonases failed to enhance beta-hemolytic activity. The results of this study demonstrate that heterologous expression of Bacillus sp. AiiA lactonases in B. thailandensis reduced AHL accumulation, affected both swarming and twitching motility, increased generation time, altered substrate utilization, and prevented the beta-hemolysis of sheep erythrocytes. Many gram-negative bacteria utilize N-acylhomoserine lactones (AHLs) in a cell density-dependent manner, referred to as quorum sensing (QS), to control gene expression (14). When an adequate AHL concentration is reached, the signaling molecules are bound by LuxR proteins, which in turn either induces or represses gene expression. QS networks have been identified in dozens of bacterial species and have been shown to be involved in various physiological process (8, 12, 19, 36). Burkholderia thailandensis is a gram-negative bacterium that is genetically and biochemically similar to Burkholderia pseudomallei (the causative agent of melioidosis) and Burkholderia mallei (the etiologic agent of glanders) (3, 16). Although the bacterium is genetically related to B. pseudomallei, B. thailandensis is an avirulent Burkholderia species that does not cause disease in humans. Comparative analysis of the B. pseudomallei and B. thailandensis 16S rRNAs revealed differences in 15 nucleotides, which justified the classification of a new Burkholderia species (3). The most striking difference between these organisms is their ability to cause acute disease in a Syrian hamster model. An intraperitoneal challenge of <101 CFU of B. pseudomallei causes mortality in hamsters within 3 to 5 days, in contrast to a dose of >106 CFU for B. thailandensis (3). Several investigations have recently identified functional QS networks in Burkholderia species (2, 5, 17, 26, 27). In Burkholderia cepacia, QS negatively regulates ornibactin biosynthesis and positively induces protease and N-octanoylhomoserine lactone (C8-HSL) production (26, 27). Recently, an additional pair of luxIR genes (cciIR) were identified in B. cepacia and shown to be involved in pathogenicity (2). Burkholderia vietnamiensis produces multiple AHL molecules, with the predominant AHL being N-decanoylhomoserine lactone (C10-HSL) and with C8-HSL and N-hexanoylhomoserine lactone (C6-HSL) being produced to a lesser extent (5, 17). Our laboratory has recently identified a complex QS network encoded by B. thailandensis that is comprised of at least three AHL synthases and five putative transcriptional regulators homologous to LuxIR proteins, which were shown to affect swarming and twitching motility, lipase production, beta-hemolysis, and carbon metabolism (38). Considering the diverse microbial species that use QS for the regulation of numerous physiological processes, applications targeted at disrupting this mode of intraspecies communication would be of significant interest to the medical, environmental, and agricultural communities. In the marine environment, Delisea pulchra (a microalga) produces brominated furanones that are hypothesized to compete with bacterial AHLs for the binding sites within putative LuxR proteins (29). In some culture environments, AHL signaling molecules can be utilized as sole carbon and energy sources by species of Pseudomonas, Variovorax, and Ralstonia (22, 24, 28). Xu et al. recently demonstrated that porcine kidney acylase I deacylates both N-butanoylhomoserine lactone (C4-HSL) and C8-HSL into l-homoserine (41). This acylase I-mediated deacylation of C4-HSL and C8-HSL also reduced biofilm formation in an aquarium water model (41). Enzymatic cleavage, specifically lactone ring hydrolysis, of signaling molecules by numerous Bacillus species has also been reported (9-11). These enzymes, termed AiiA lactonases, hydrolyze the lactone bond within the AHL moiety, thus changing the relative conformational structure of the signaling molecule, which prevents binding to the LuxR transcriptional regulator. Heterologous expression of the Bacillus cereus strain A24 AiiA lactonase in Pseudomonas aeruginosa PA01 reduced AHL accumulation, altered swarming motility, and decreased the expression and secretion of numerous virulence factors, including elastase, rhamnolipid, hydrogen cyanide, and pyocyanin (30). In Erwinia carotovora, a plant pathogen, aiiA expression reduced the synthesis of pectolytic enzymes and reduced pathogenicity in several plant models of infection (11). This study analyzes the effect of C6-HSL, C8-HSL, and C10-HSL cleavage on twitching and swarming motility, beta-hemolysis, and carbon utilization by the expression of Bacillus sp. AiiA lactonases in B. thailandensis. MATERIALS AND METHODS Bacterial strains and plasmids. All bacterial strains and plasmids used in this study are described in Table 1. B. thailandensis, Agrobacterium tumefaciens A136, and Escherichia coli were cultured in Luria-Bertani (LB) broth or on LB agar plates at 30 or 37°C, as required.
Cloning of B. anthracis aiiA. Genomic DNA for PCR amplification of the Bacillus anthracis (Ames strain) aiiA lactonase gene was purified by using the Puregene yeast and gram-positive bacterium kit according to the instructions of the manufacturer (Gentra Systems, Minneapolis, Minn.). The B. anthracis aiiA gene was PCR amplified by using the primer set (forward, 5′-ATG GGA TCC ATG ACA GTA AAG AAG CTT TAT-3′; reverse, 5′-GTC GAA TTC CTC AAC AAG ATA CTC CTA ATG-3′) reported by Dong et al. (9) and amplified as follows: one cycle of 94°C for 5 min; 30 cycles of 94°C for 30 s, 50°C for 30 s, and 72°C for 1 min; and a final 7-min extension at 72°C. All PCRs were performed with the FailSafe PCR system with buffer E (Epicentre Technologies, Madison, Wis.), and amplicons were subcloned into pCR2.1-TOPO (Invitrogen, Carlsbad, Calif.). Ligations were transformed into One Shot chemically competent E. coli (Invitrogen) and screened on LB plates containing 25 μg of kanamycin (Sigma, St. Louis, Mo.) per ml and 50 μg of 5-bromo-4-chloro-3-indolyl-β-d-galactoside (X-Gal) (Sigma) per ml. For heterologous expression in B. thailandensis, the B. anthracis aiiA gene was PCR amplified as described above with the forward primer 5′-CCG GAA TTC CGC ATG ACA GTA AAG AAG CTT TAT TTC G-3′ and reverse primer 5′-CAT GCC ATG GCA TGC TCA ACA AGA TAC TCC TAA TGA TGT-3′. (Boldface represents the EcoRI and NcoI sites incorporated into the oligonucleotides for directional cloning.) The resulting amplicon was digested with EcoRI and NcoI and cloned in frame into similarly digested pBHR1 by using the Fast-Link DNA ligation kit (Epicentre Technologies). Plasmid DNA was purified using the Wizard Plus Miniprep DNA kit (Promega, Madison, Wis.), electroporated into E. coli S17-1, and mobilized into B. thailandensis, and transconjugants were selected on LB plates containing 25 μg of kanamycin per ml and 15 μg of polymyxin per ml (Sigma) as described previously (37). The expression vectors pME6000 and pME6863 containing the B. cereus strain A24 aiiA lactonase gene were generously forwarded to our laboratory from Clemson University and mobilized into B. thailandensis as described above. Analysis of AHL-degrading activity by B. thailandensis expressing the AiiA lactonases. Extraction of AHLs from culture supernatants and preparative thin-layer chromatography (TLC) were performed as described by Shaw et al. (34). Extracts were reconstituted in 1 ml of acetonitrile (Sigma) and separated (60:40 [vol/vol] methanol solution) by spotting 10 μl of a 1:10 dilution of each extract onto a reversed-phase C18 plate (Analtech Inc., Newark, Del.). TLC plates were dried and overlaid with 30 ml of top agar (0.75% LB agar) containing 5 ml of A. tumefaciens A136 (from an overnight culture) and X-Gal. The plates were incubated at 30°C for 48 h or until adequate color development was achieved. Motility and exoproduct secretion. Protease and lipase production were examined by using methods described by DeShazer et al. (7). To assay for beta-hemolysis, colonies were transferred onto 5% sheep blood agar plates and incubated for 48 to 72 h at 37°C. Twitching motility and swarming motility were examined by using methods described by Reimmann et al. (30). Growth kinetics and substrate utilization of B. thailandensis expressing the B. anthracis and B. cereus AiiA lactonases. From a glycerol stock of RU01, -02, -03, or -04, 50 μl was inoculated into 3 ml of LB broth containing the appropriate antibiotics and incubated for 24 h at 37°C. For growth curve analysis, the optical density at 600 nm from the 3-ml overnight cultures was measured, and 25 μl was used to inoculate 250 ml of LB broth. The optical density at 600 nm was monitored hourly over a 15-h time course. At each time point, serial 10-fold dilutions were prepared and appropriate dilutions were plated onto LB plates containing selective antibiotics. To examine whether carbon utilization was affected by AHL cleavage, BiOLOG (Hayward, Calif.) phenotypic arrays were employed. Each derivative strain (with the exception of RU02, which was grown for 48 h) was cultured on R2A agar plates (BiOLOG) with the appropriate antibiotics for 24 h at 37°C. Cellular densities were adjusted in IF-0 fluid (BiOLOG), and plates were inoculated with 100 μl of the cell suspension. Plates were incubated at 37°C for 24 to 48 h or until sufficient color development was reached. For growth in M9 minimal medium (31), 50 μl of wild-type B. thailandensis and RU04 from an overnight culture in LB broth was pelleted (14,000 rpm for 2 min with a Spectrafuge 16M [National Labnet Co., Edison, N.J.]), washed three times in phosphate-buffered saline, resuspended in 50 μl of phosphate-buffered saline, and inoculated into M9 minimal medium with and without d-arabinose as the sole carbon source. RESULTS Cloning of the B. anthracis aiiA gene and expression in B. thailandensis. The B. anthracis aiiA lactonase gene was PCR amplified by using primers described by Dong et al. (9) and directionally cloned into the broad-host-range expression vector pBHR1 to produce pBA01. With pBA01 as the template, the B. anthracis aiiA lactonase gene was reamplified and sequenced to ensure fidelity during initial PCR amplification for subcloning. Nucleotide and amino acid sequence alignments between the B. anthracis aiiA and other closely related lactonase genes were performed (data not shown), and homologies were identical to the findings of Lee et al. (25). The B. cereus strain A24 aiiA lactonase gene was cloned and genetically characterized as described by Reimmann et al. (30). Lactonase expression in B. thailandensis reduces AHL accumulation. To examine the effect of aiiA lactonase expression on AHL accumulation in B. thailandensis, a semiquantitative approach was employed, incorporating soft-agar TLC overlays containing the bioreporter strain A. tumefaciens A136. Heterologous expression of the B. cereus AiiA lactonase in B. thailandensis reduced C6-HSL, C8-HSL, and C10-HSL to undetectable levels, while the B. anthracis AiiA lactonase reduced the level of C6-HSL but completely prevented the accumulation of C8-HSL and C10-HSL (Fig. (Fig.1,1
Swarming and twitching motilities in B. thailandensis are affected by aiiA expression. Several investigations have shown that QS regulates motility in gram-negative bacteria (1, 15, 23, 30). Expression of pBA01 (RU02) in B. thailandensis reduced swarming motility, while heterologous expression of pME6863 (RU04) resulted in a hyperswarming phenotype (Fig. (Fig.2,2
Expression of pBA01 (RU02) and pME6863 (RU04) in B. thailandensis also resulted in altered colony morphologies on twitching motility plates. The uniform concentric ring produced by wild-type B. thailandensis was not observed with RU02(pBA01) and RU04(pME6863) (Fig. (Fig.2,2 Lactonase expression in B. thailandensis prevents hyperhemolysis of sheep erythrocytes. Haussler et al. recently purified and characterized a hemolytic rhamnolipid synthesized by B. pseudomallei (20). Interestingly, B. thailandensis produces a rhamnolipid that is structurally and biochemically analogous to the B. pseudomallei cytotoxic and hemolytic exolipid (38). To determine whether expression of the Bacillus sp. AiiA lactonases in B. thailandensis affected beta-hemolytic activity, each derivative strain was tested on sheep blood agar plates. Expression of pBA01 (RU02) and pME6863 (RU04) in B. thailandensis had no effect on beta-hemolytic activity, whereas individual mutagenesis of the btaI1 and btaI3 genes (luxI mutant strains), which encode the proteins that direct the synthesis of C6-HSL and C8-HSL, resulted in hyperhemolytic phenotypes on sheep blood agar plates (Fig. (Fig.2,2 Expression of the B. anthracis and B. cereus aiiA in B. thailandensis affects growth and carbon utilization. During analysis of the effect of AHL cleavage on swarming and twitching motility in B. thailandensis, a notable AHL-dependent growth phenotype was observed for RU02(pBA01) (Table 2). To further confirm this growth reduction, the generation times of wild-type B. thailandensis and RU02(pBA01) were calculated throughout exponential growth in LB broth. Cleavage of C10-HSL and C8-HSL by expression of pBA01 (RU02) in B. thailandensis caused a pronounced increase in generation time (243 min) in comparison to that of wild-type B. thailandensis (48 min) (Table 2). In addition, the duration of logarithmic growth of RU02(pBA01) in comparison to wild-type B. thailandensis was reduced, as were the relative cell yields (data not shown). Further, the transition from lag-phase to logarithmic growth for RU02(pBA01) compared to wild-type B. thailandensis was increased (data not shown). Maintenance of the B. cereus AiiA lactonase (RU04) or the broad-host-range expression vectors pBHRI (RU01) and pME6000 (RU03) imposed no inhibitory effect on B. thailandensis growth (data not shown).
To further assess this growth characteristic, BiOLOG phenotypic microarrays were utilized to determine if carbon acquisition or metabolism was affected by AiiA lactonase expression in B. thailandensis. On BiOLOG PM1 plates, heterologous expression of the B. cereus (RU04) and B. anthracis (RU02) AiiA lactonases in B. thailandensis prevented growth on l-aspartic acid and P-hydroxy phenyl acetic acid (Table 2). Numerous substrates unique to RU02(pBA01), which heterologously expresses the B. anthracis AiiA lactonase and does not accumulate C8-HSL and C10-HSL (Fig. (Fig.1,1 DISCUSSION This study analyzed the affect of heterologous expression of Bacillus sp. AiiA lactonases in B. thailandensis and found that these AHL-cleaving enzymes significantly reduced the accumulation of C6-HSL, C8-HSL, and C10-HSL; affected bacterial motility; increased cellular generation time; and caused fluctuations in carbon metabolism and transport. The inhibition of AHL accumulation in B. thailandensis by maintenance of pBA01 (RU02) was similar to the cleavage pattern observed by expression of the B. cereus AiiA lactonase (RU04). The B. anthracis AiiA lactonase efficiently cleaved both C8-HSL and C10-HSL in B. thailandensis; however, trace amounts of C6-HSL were still detected by using TLC bioreporter overlays (Fig. (Fig.1,1 Like B. pseudomallei, B. thailandensis is capable of bacterial motility, and disruption (individual gene mutagenesis) of the B. thailandensis QS network resulted in defective motility phenotypes (38). As observed with the BTRJ1 (luxI) and BTRJ6 (luxR) QS mutants, expression of pBA01 (RU02) and pME6863 (RU04) in B. thailandensis also caused altered swarming and twitching motility phenotypes (Fig. (Fig.2,2 As with swarming, alterations in twitching motility were observed by heterologous expression of pBA01 (RU02) and pME6863 (RU04) in B. thailandensis. Most notable was the phenotype observed for RU04(pME6863). Colony symmetry, morphology, and pigmentation of RU04 were similar to the phenotype observed for BTRJ6 (which contains an insertionally disrupted btaR3 gene, a luxR homologue) on twitching plates. Interestingly, BTRJ6 (btaR3) is a transcriptional regulator mutant, and previous analysis of AHL biosynthesis in B. thailandensis indicated that C6-HSL, C8-HSL, and C10-HSL accumulation was not affected by disruption of any of the five encoded LuxR homologues (38). Curiously, disruption of the B. thailandensis btaI1, btaI2, and btaI3 luxI homologues failed to cause a phenotype similar to that of RU04(pME6863) on twitching plates (data not shown). These findings suggest that the altered colony morphologies observed for B. thailandensis on twitching motility plates are linked to the accumulation of multiple signaling molecules in conjunction with the BtaR3 (LuxR homologue) transcriptional regulator. However, further analysis of this phenotype at the genetic level will be necessary before any definitive conclusion can be reached. Mutations in the btaI1 and btaI3 luxI homologues, which encode the proteins that direct the synthesis of C8-HSL and C6-HSL, result in elevated beta-hemolytic activity on sheep blood agar plates (Fig. (Fig.2,2 QS has been shown to affect the growth of various bacterial species belonging to the Rhizobium genus; however, the cellular mechanisms contributing to these reduction in growth remain to be determined (6, 18, 21, 32, 40). Interestingly, AHL cleavage in B. thailandensis, specifically C8-HSL and C10-HSL (Fig. (Fig.1,1 It seems that QS in B. thailandensis represents a complex gene regulatory network. This study demonstrates that AiiA lactonase expression in B. thailandensis reduces the accumulation of the signaling molecules C6-HSL, C8-HSL, and C10-HSL and bacterial motility; increases cellular generation time; and causes fluctuations in carbon metabolism. Stable heterologous expression of an AiiA lactonase(s) in Burkholderia species will possibly eliminate the need to generate multideletion mutants in a single organism that synthesizes numerous AHLs and may facilitate vaccine development for gram-negative bacterial pathogens that utilize QS to regulate virulence gene expression. Acknowledgments I extend a special thank you to Melanie Ulrich and Katheryn Kenyon for reviewing the manuscript and to Donald J. Chabot for providing purified B. anthracis genomic DNA for aiiA lactonase gene cloning. I additionally thank David DeShazer for scientific and technical discussions regarding this investigation. The research described herein was sponsored by the Medical Biological Defense Research Program, U.S. Army Medical Research and Material Command. Opinions, interpretations, conclusions, and recommendations are those of the author and are not necessarily endorsed by the U.S. Army. REFERENCES 1. Atkinson, S., J. P. Throup, G. S. Stewart, and P. Williams. 1999. A hierarchical quorum-sensing system in Yersinia pseudotuberculosisYersinia pseudotuberculosis is involved in the regulation of motility and clumping. Mol. Microbiol. 33:1267-1277. [PubMed] 2. Baldwin, A., P. A. Sokol, J. Parkhill, and E. Mahenthiralingam. 2004. The Burkholderia cepaciaBurkholderia cepacia epidemic strain marker is part of a novel genomic island encoding both virulence and metabolism-associated genes in Burkholderia cenocepaciaBurkholderia cenocepacia. Infect. Immun. 72:1537-1547. [PubMed] 3. Brett, P. J., D. DeShazer, and D. E. Woods. 1998. 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