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Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms?
Rodrigo A Gutiérrez, Pamela J Green, Kenneth Keegstra, John B Ohlrogge
Genome Biol. 2004; 5(8): R53. Published online 2004 July 15. doi: 10.1186/gb-2004-5-8-r53
PMCID:
PMC507878
Abstract Full Text PDF–400K

Is Cited by the Following 11 Articles in this Archive:

Promiscuous binding of extracellular peptides to cell surface class I MHC protein
Herman N. Eisen, Xun Helen Hou, Chase Shen, Kaidi Wang, Varsha Keelara Tanguturi, Crysela Smith, Katerina Kozyrytska, Lakshmi Nambiar, Carol A. McKinley, Jianzhu Chen, Richard J. Cohen
Proc Natl Acad Sci U S A. 2012 March 20; 109(12): 4580–4585. Published online 2012 March 7. doi: 10.1073/pnas.1201586109
PMCID:
PMC3311345
Free in PMC on 2012/09/20
PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants
Sebastian Proost, Michiel Van Bel, Lieven Sterck, Kenny Billiau, Thomas Van Parys, Yves Van de Peer, Klaas Vandepoele
Plant Cell. 2009 December; 21(12): 3718–3731. doi: 10.1105/tpc.109.071506
PMCID:
PMC2814516
Abstract Full Text PDF–1.2M Supplementary Material
Unique genes in plants: specificities and conserved features throughout evolution
David Armisén, Alain Lecharny, Sébastien Aubourg
BMC Evol Biol. 2008; 8: 280. Published online 2008 October 10. doi: 10.1186/1471-2148-8-280
PMCID:
PMC2576244
Abstract Full Text PDF–932K Supplementary Material
The rules of gene expression in plants: Organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana
Felipe F Aceituno, Nick Moseyko, Seung Y Rhee, Rodrigo A Gutiérrez
BMC Genomics. 2008; 9: 438. Published online 2008 September 23. doi: 10.1186/1471-2164-9-438
PMCID:
PMC2566314
Abstract Full Text PDF–584K Supplementary Material
Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment
Raja Jothi, Teresa M Przytycka, L Aravind
BMC Bioinformatics. 2007; 8: 173. Published online 2007 May 23. doi: 10.1186/1471-2105-8-173
PMCID:
PMC1904249
Abstract Full Text PDF–2.9M Supplementary Material
PlanTAPDB, a Phylogeny-Based Resource of Plant Transcription-Associated Proteins
Sandra Richardt, Daniel Lang, Ralf Reski, Wolfgang Frank, Stefan A. Rensing
Plant Physiol. 2007 April; 143(4): 1452–1466. doi: 10.1104/pp.107.095760
PMCID:
PMC1851845
Abstract Full Text PDF–1.1M Supplementary Material
A Comprehensive Structure–Function Analysis of Arabidopsis SNI1 Defines Essential Regions and Transcriptional Repressor Activity
Rebecca A. Mosher, Wendy E. Durrant, Dong Wang, Junqi Song, Xinnian Dong
Plant Cell. 2006 July; 18(7): 1750–1765. doi: 10.1105/tpc.105.039677
PMCID:
PMC1488919
Abstract Full Text PDF–663K Supplementary Material
Transcription Analysis of Arabidopsis Membrane Transporters and Hormone Pathways during Developmental and Induced Leaf Senescence
Eric van der Graaff, Rainer Schwacke, Anja Schneider, Marcelo Desimone, Ulf-Ingo Flügge, Reinhard Kunze
Plant Physiol. 2006 June; 141(2): 776–792. doi: 10.1104/pp.106.079293
PMCID:
PMC1475451
Abstract Full Text PDF–410K Supplementary Material
Characteristics and clustering of human ribosomal protein genes
Kyota Ishii, Takanori Washio, Tamayo Uechi, Maki Yoshihama, Naoya Kenmochi, Masaru Tomita
BMC Genomics. 2006; 7: 37. Published online 2006 February 28. doi: 10.1186/1471-2164-7-37
PMCID:
PMC1459141
Abstract Full Text PDF–919K Supplementary Material
Exploring the Plant Transcriptome through Phylogenetic Profiling
Klaas Vandepoele, Yves Van de Peer
Plant Physiol. 2005 January; 137(1): 31–42. doi: 10.1104/pp.104.054700
PMCID:
PMC548836
Abstract Full Text PDF–304K Supplementary Material
The Plant-Specific Database. Classification of Arabidopsis Proteins Based on Their Phylogenetic Profile
Rodrigo A. Gutiérrez, Matthew D. Larson, Curtis Wilkerson
Plant Physiol. 2004 August; 135(4): 1888–1892. doi: 10.1104/pp.104.043687
PMCID:
PMC520760
Full Text PDF–270K
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