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Systematic quantification of gene interactions by phenotypic array analysis
John L Hartman, IV, Nicholas P Tippery
Genome Biol. 2004; 5(7): R49. Published online 2004 June 29. doi: 10.1186/gb-2004-5-7-r49
PMCID:
PMC463315
Abstract Full Text PDF–1.0M Supplementary Material

Is Cited by the Following 16 Articles in this Archive:

Multi-membership gene regulation in pathway based microarray analysis
Stelios P Pavlidis, Annette M Payne, Stephen M Swift
Algorithms Mol Biol. 2011; 6: 22. Published online 2011 September 22. doi: 10.1186/1748-7188-6-22
PMCID:
PMC3189100
Abstract Full Text PDF–506K
Investigation of in Vivo Diferric Tyrosyl Radical Formation in Saccharomyces cerevisiae Rnr2 Protein: REQUIREMENT OF Rnr4 AND CONTRIBUTION OF Grx3/4 AND Dre2 PROTEINS
Yan Zhang, Lili Liu, Xiaorong Wu, Xiuxiang An, JoAnne Stubbe, Mingxia Huang
J Biol Chem. 2011 December 2; 286(48): 41499–41509. Published online 2011 September 20. doi: 10.1074/jbc.M111.294074
PMCID:
PMC3308861
Free in PMC on 2012/12/02
Epidermal growth factor receptor mutation in combination with expression of MIG6 alters gefitinib sensitivity
Yoshimi Naruo, Takeshi Nagashima, Ryoko Ushikoshi-Nakayama, Yuko Saeki, Takashi Nakakuki, Takashi Naka, Hiroshi Tanaka, Shih-Feng Tsai, Mariko Okada-Hatakeyama
BMC Syst Biol. 2011; 5: 29. Published online 2011 February 18. doi: 10.1186/1752-0509-5-29
PMCID:
PMC3224393
Abstract Full Text PDF–741K Supplementary Material
Quantitative analysis of fitness and genetic interactions in yeast on a genome scale
Anastasia Baryshnikova, Michael Costanzo, Yungil Kim, Huiming Ding, Judice Koh, Kiana Toufighi, Ji-Young Youn, Jiongwen Ou, Bryan-Joseph San Luis, Sunayan Bandyopadhyay, Matthew Hibbs, David Hess, Anne-Claude Gingras, Gary D Bader, Olga G Troyanskaya, Grant W Brown, Brenda Andrews, Charles Boone, Chad L Myers
Nat Methods. Author manuscript; available in PMC 2011 June 17.
Published in final edited form as: Nat Methods. 2010 December; 7(12): 1017–1024. Published online 2010 November 14. doi: 10.1038/nmeth.1534
PMCID:
PMC3117325
Abstract Full Text PDF–1.4M Supplementary Material
The zebrafish: scalable in vivo modeling for systems biology
Rahul C. Deo, Calum A. MacRae
Wiley Interdiscip Rev Syst Biol Med. Author manuscript; available in PMC 2012 January 4.
Published in final edited form as: Wiley Interdiscip Rev Syst Biol Med. 2011 May-Jun; 3(3): 335–346. Published online 2010 September 29. doi: 10.1002/wsbm.117
PMCID:
PMC3251331
Abstract Full Text PDF–382K
Recursive expectation-maximization clustering: A method for identifying buffering mechanisms composed of phenomic modules
Jingyu Guo, Dehua Tian, Brett A. McKinney, John L. Hartman, IV
Chaos. 2010 June; 20(2): 026103. Published online 2010 June 30. doi: 10.1063/1.3455188
PMCID:
PMC2909310
Abstract Full Text PDF–1.1M
On the Classification of Epistatic Interactions
Hong Gao, Julie M. Granka, Marcus W. Feldman
Genetics. 2010 March; 184(3): 827–837. doi: 10.1534/genetics.109.111120
PMCID:
PMC2845349
Abstract Full Text PDF–2.3M
Phenotypic Consequences of Purine Nucleotide Imbalance in Saccharomyces cerevisiae
Christelle Saint-Marc, Benoît Pinson, Fanny Coulpier, Laurent Jourdren, Olesia Lisova, Bertrand Daignan-Fornier
Genetics. 2009 October; 183(2): 529–538. doi: 10.1534/genetics.109.105858
PMCID:
PMC2766314
Abstract Full Text PDF–2.2M
Stringent Mating-Type-Regulated Auxotrophy Increases the Accuracy of Systematic Genetic Interaction Screens with Saccharomyces cerevisiae Mutant Arrays
Indira Singh, Rebecca Pass, Sine Ozmen Togay, John W. Rodgers, John L. Hartman, IV
Genetics. 2009 January; 181(1): 289–300. doi: 10.1534/genetics.108.092981
PMCID:
PMC2621176
Abstract Full Text PDF–1.2M
A Caenorhabditis elegans genetic-interaction map wiggles into view
Kristin C Gunsalus
J Biol. 2008; 7(3): 8. Published online 2008 March 7. doi: 10.1186/jbiol70
PMCID:
PMC2323036
Abstract Full Text PDF–639K
Defining genetic interaction
Ramamurthy Mani, Robert P. St.Onge, John L. Hartman, IV, Guri Giaever, Frederick P. Roth
Proc Natl Acad Sci U S A. 2008 March 4; 105(9): 3461–3466. Published online 2008 February 27. doi: 10.1073/pnas.0712255105
PMCID:
PMC2265146
Abstract Full Text PDF–316K Supplementary Material
High-throughput analysis of spatio-temporal dynamics in Dictyostelium
Satoshi Sawai, Xiao-Juan Guan, Adam Kuspa, Edward C Cox
Genome Biol. 2007; 8(7): R144. Published online 2007 July 21. doi: 10.1186/gb-2007-8-7-r144
PMCID:
PMC2323234
Abstract Full Text PDF–2.6M Supplementary Material
Buffering of deoxyribonucleotide pool homeostasis by threonine metabolism
John L. Hartman, IV
Proc Natl Acad Sci U S A. 2007 July 10; 104(28): 11700–11705. Published online 2007 July 2. doi: 10.1073/pnas.0705212104
PMCID:
PMC1913885
Abstract Full Text PDF–503K
Chemical combination effects predict connectivity in biological systems
Joseph Lehár, Grant R Zimmermann, Andrew S Krueger, Raymond A Molnar, Jebediah T Ledell, Adrian M Heilbut, Glenn F Short, III, Leanne C Giusti, Garry P Nolan, Omar A Magid, Margaret S Lee, Alexis A Borisy, Brent R Stockwell, Curtis T Keith
Mol Syst Biol. 2007; 3: 80. Published online 2007 February 27. doi: 10.1038/msb4100116
PMCID:
PMC1828746
Abstract Full Text PDF–616K Supplementary Material
Accurate, precise modeling of cell proliferation kinetics from time-lapse imaging and automated image analysis of agar yeast culture arrays
Najaf A Shah, Richard J Laws, Bradley Wardman, Lue Ping Zhao, John L Hartman, IV
BMC Syst Biol. 2007; 1: 3. Published online 2007 January 8. doi: 10.1186/1752-0509-1-3
PMCID:
PMC1847469
Abstract Full Text PDF–1.1M Supplementary Material
A strategy for extracting and analyzing large-scale quantitative epistatic interaction data
Sean R Collins, Maya Schuldiner, Nevan J Krogan, Jonathan S Weissman
Genome Biol. 2006; 7(7): R63. Published online 2006 July 21. doi: 10.1186/gb-2006-7-7-r63
PMCID:
PMC1779568
Abstract Full Text PDF–1.2M Supplementary Material
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