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Tissue-specific spatial organization of genomes
Luis A Parada, Philip G McQueen, Tom Misteli
Genome Biol. 2004; 5(7): R44. Published online 2004 June 21. doi: 10.1186/gb-2004-5-7-r44
PMCID:
PMC463291
Abstract Full Text PDF–365K Supplementary Material
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 Is Cited by the Following 37 Articles in this Archive:
On emerging nuclear order
Indika Rajapakse, Mark Groudine
J Cell Biol. 2011 March 7; 192(5): 711–721. doi: 10.1083/jcb.201010129
PMCID:
PMC3051810
Abstract Full Text PDF–1.3M
Cell Biology of the Trypanosome Genome
Jan-Peter Daniels, Keith Gull, Bill Wickstead
Microbiol Mol Biol Rev. 2010 December; 74(4): 552–569. doi: 10.1128/MMBR.00024-10
PMCID:
PMC3008170
Abstract Full Text PDF–1.8M
Nuclear positioning, higher-order folding, and gene expression of Mmu15 sequences are refractory to chromosomal translocation
Kathy J. Snow, Sarah M. Wright, Yong Woo, Laura C. Titus, Kevin D. Mills, Lindsay S. Shopland
Chromosoma. Author manuscript; available in PMC 2011 March 15.
Published in final edited form as: Chromosoma. 2011 February; 120(1): 61–71. Published online 2010 August 12. doi: 10.1007/s00412-010-0290-9
PMCID:
PMC3057431
Abstract Full Text PDF–1.1M Supplementary Material
Genome-Scale Approaches to Investigate Oxidative DNA Damage
Shinya Akatsuka, Shinya Toyokuni
J Clin Biochem Nutr. 2010 September; 47(2): 91–97. Published online 2010 August 6. doi: 10.3164/jcbn.10-38R
PMCID:
PMC2935159
Abstract Full Text PDF–608K
Networking the nucleus
Indika Rajapakse, David Scalzo, Stephen J Tapscott, Steven T Kosak, Mark Groudine
Mol Syst Biol. 2010; 6: 395. Published online 2010 July 27. doi: 10.1038/msb.2010.48
PMCID:
PMC2925527
Abstract Full Text PDF–1.6M
Changes in chromatin structure during processing of wax-embedded tissue sections
Elizabeth Kerr, Tomoharu Kiyuna, Shelagh Boyle, Akira Saito, Jeremy St J. Thomas, Wendy A. Bickmore
Chromosome Res. 2010 September; 18(6): 677–688. Published online 2010 July 27. doi: 10.1007/s10577-010-9147-6
PMCID:
PMC2941078
Abstract Full Text PDF–404K
Chromosome Territories
Thomas Cremer, Marion Cremer
Cold Spring Harb Perspect Biol. 2010 March; 2(3): a003889. doi: 10.1101/cshperspect.a003889
PMCID:
PMC2829961
Abstract Full Text PDF–1.5M
1α,25-dihydroxy vitamin D3 induces nuclear matrix association of the 1α,25-dihydroxy vitamin D3 receptor in osteoblasts independently of its ability to bind DNA
Gloria Arriagada, Roberto Paredes, Andre J. van Wijnen, Jane B. Lian, Brigitte van Zundert, Gary S. Stein, Janet L. Stein, Martin Montecino
J Cell Physiol. Author manuscript; available in PMC 2011 June 2.
Published in final edited form as: J Cell Physiol. 2010 February; 222(2): 336–346. doi: 10.1002/jcp.21958
PMCID:
PMC3106996
Abstract Full Text PDF–1.4M Supplementary Material
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
Stefan Schoenfelder, Tom Sexton, Lyubomira Chakalova, Nathan F Cope, Alice Horton, Simon Andrews, Sreenivasulu Kurukuti, Jennifer A Mitchell, David Umlauf, Daniela S Dimitrova, Christopher H Eskiw, Yanquan Luo, Chia-Lin Wei, Yijun Ruan, James J Bieker, Peter Fraser
Nat Genet. Author manuscript; available in PMC 2011 December 14.
Published in final edited form as: Nat Genet. 2010 January; 42(1): 53–61. Published online 2009 December 13. doi: 10.1038/ng.496
PMCID:
PMC3237402
Abstract Full Text PDF–3.3M Supplementary Material
Spatial organization of genes as a component of regulated expression
Dave A. Pai, David R. Engelke
Chromosoma. Author manuscript; available in PMC 2010 February 1.
Published in final edited form as: Chromosoma. 2010 February; 119(1): 13–25. Published online 2009 August 30. doi: 10.1007/s00412-009-0236-2
PMCID:
PMC2809799
Abstract Full Text PDF–924K
3D fluorescent in situ hybridization using Arabidopsis leaf cryosections and isolated nuclei
Leïla Tirichine, Philippe Andrey, Eric Biot, Yves Maurin, Valérie Gaudin
Plant Methods. 2009; 5: 11. Published online 2009 August 3. doi: 10.1186/1746-4811-5-11
PMCID:
PMC2731090
Abstract Full Text PDF–758K
Spatial link between nucleoli and expression of the Zac1 gene
Félix Royo, Nerea Paz, Luis Espinosa, Philip G. McQueen, Luciano Vellón, Luis A. Parada
Chromosoma. Author manuscript; available in PMC 2010 December 1.
Published in final edited form as: Chromosoma. 2009 December; 118(6): 711–722. Published online 2009 August 1. doi: 10.1007/s00412-009-0229-1
PMCID:
PMC2783200
Abstract Full Text PDF–1.3M Supplementary Material
Transcriptional competence of the integrated HIV-1 provirus at the nuclear periphery
Mariacarolina Dieudonné, Paolo Maiuri, Chiara Biancotto, Anna Knezevich, Anna Kula, Marina Lusic, Alessandro Marcello
EMBO J. 2009 August 5; 28(15): 2231–2243. Published online 2009 May 28. doi: 10.1038/emboj.2009.141
PMCID:
PMC2726691
Abstract Full Text PDF–1.0M Supplementary Material
Gene Clusters, Molecular Evolution and Disease: A Speculation
Leah I Elizondo, Paymaan Jafar-Nejad, J. Marietta Clewing, Cornelius F Boerkoel
Curr Genomics. 2009 March; 10(1): 64–75. doi: 10.2174/138920209787581271
PMCID:
PMC2699835
Abstract Full Text PDF–212K
Chromatin position in human HepG2 cells: Although being non-random, significantly changed in daughter cells
Zuzana Cvačková, Martin Mašata, David Staněk, Helena Fidlerová, Ivan Raška
J Struct Biol. 2009 February; 165(2): 107–117. doi: 10.1016/j.jsb.2008.10.007
PMCID:
PMC2658736
Abstract Full Text PDF–1.6M Supplementary Material
Association between active genes occurs at nuclear speckles and is modulated by chromatin environment
Jill M. Brown, Joanne Green, Ricardo Pires das Neves, Helen A.C. Wallace, Andrew J.H. Smith, Jim Hughes, Nicki Gray, Steve Taylor, William G. Wood, Douglas R. Higgs, Francisco J. Iborra, Veronica J. Buckle
J Cell Biol. 2008 September 22; 182(6): 1083–1097. doi: 10.1083/jcb.200803174
PMCID:
PMC2542471
Abstract Full Text PDF–6.5M
Mobility and immobility of chromatin in transcription and genome stability
Evi Soutoglou, Tom Misteli
Curr Opin Genet Dev. Author manuscript; available in PMC 2007 December 6.
Published in final edited form as: Curr Opin Genet Dev. 2007 October; 17(5): 435–442. Published online 2007 October 1. doi: 10.1016/j.gde.2007.08.004
PMCID:
PMC2118061
Abstract Full Text PDF–931K
Positioning of NORs and NOR-bearing chromosomes in relation to nucleoli
Markéta Kalmárová, Evgeny Smirnov, Martin Mašata, Karel Koberna, Anna Ligasová, Alexey Popov, Ivan Raška
J Struct Biol. 2007 October; 160(1-3): 49–56. doi: 10.1016/j.jsb.2007.06.012
PMCID:
PMC2446407
Abstract Full Text PDF–753K
Quantitative Analysis of Cell Nucleus Organisation
Carol Shiels, Niall M Adams, Suhail A Islam, David A Stephens, Paul S Freemont
PLoS Comput Biol. 2007 July; 3(7): e138. Published online 2007 July 27. doi: 10.1371/journal.pcbi.0030138
PMCID:
PMC1933473
Abstract Full Text PDF–217K
Myc Dynamically and Preferentially Relocates to a Transcription Factory Occupied by Igh
Cameron S Osborne, Lyubomira Chakalova, Jennifer A Mitchell, Alice Horton, Andrew L Wood, Daniel J Bolland, Anne E Corcoran, Peter Fraser
PLoS Biol. 2007 August; 5(8): e192. Published online 2007 July 10. doi: 10.1371/journal.pbio.0050192
PMCID:
PMC1945077
Abstract Full Text PDF–817K Supplementary Material
Gold-Nanoparticle-Assisted Laser Perturbation of Chromatin Assembly Reveals Unusual Aspects of Nuclear Architecture within Living Cells
Aprotim Mazumder, G. V. Shivashankar
Biophys J. 2007 September 15; 93(6): 2209–2216. Published online 2007 May 11. doi: 10.1529/biophysj.106.102202
PMCID:
PMC1959558
Abstract Full Text PDF–984K Supplementary Material
Defects in lamin B1 expression or processing affect interphase chromosome position and gene expression
Ashraf Malhas, Chiu Fan Lee, Rebecca Sanders, Nigel J. Saunders, David J. Vaux
J Cell Biol. 2007 February 26; 176(5): 593–603. doi: 10.1083/jcb.200607054
PMCID:
PMC2064018
Abstract Full Text PDF–2.5M
Artificially Introduced Aneuploid Chromosomes Assume a Conserved Position in Colon Cancer Cells
Kundan Sengupta, Madhvi B. Upender, Linda Barenboim-Stapleton, Quang Tri Nguyen, Stephen M. Wincovitch, Sr., Susan H. Garfield, Michael J. Difilippantonio, Thomas Ried
PLoS ONE. 2007; 2(2): e199. Published online 2007 February 7. doi: 10.1371/journal.pone.0000199
PMCID:
PMC1805818
Abstract Full Text PDF–302K
Epigenetic control of nuclear architecture
J. Espada, M. Esteller
Cell Mol Life Sci. 2007 February; 64(4): 449–457. Published online 2007 January 12. doi: 10.1007/s00018-007-6358-x
PMCID:
PMC2771143
Abstract Full Text PDF–509K
Spatial genome organization in the formation of chromosomal translocations
Karen J. Meaburn, Tom Misteli, Evi Soutoglou
Semin Cancer Biol. Author manuscript; available in PMC 2007 February 26.
Published in final edited form as: Semin Cancer Biol. 2007 February; 17(1): 80–90. Published online 2006 October 26. doi: 10.1016/j.semcancer.2006.10.008
PMCID:
PMC1805052
Abstract Full Text PDF–575K
Contrasting Genome-Wide Distribution of 8-Hydroxyguanine and Acrolein-Modified Adenine during Oxidative Stress-Induced Renal Carcinogenesis
Shinya Akatsuka, Than Tin Aung, Khokon Kumar Dutta, Li Jiang, Wen-Hua Lee, Yu-Ting Liu, Janice Onuki, Tomoyuki Shirase, Kyoko Yamasaki, Hirotomo Ochi, Yuji Naito, Toshikazu Yoshikawa, Hiroshi Kasai, Yohei Tominaga, Kunihiko Sakumi, Yusaku Nakabeppu, Yoshichika Kawai, Koji Uchida, Aiichi Yamasaki, Tatsuaki Tsuruyama, Yoshihiro Yamada, Shinya Toyokuni
Am J Pathol. 2006 October; 169(4): 1328–1342. doi: 10.2353/ajpath.2006.051280
PMCID:
PMC1780183
Abstract Full Text PDF–5.7M
The locus control region is required for association of the murine β-globin locus with engaged transcription factories during erythroid maturation
Tobias Ragoczy, M.A. Bender, Agnes Telling, Rachel Byron, Mark Groudine
Genes Dev. 2006 June 1; 20(11): 1447–1457. doi: 10.1101/gad.1419506
PMCID:
PMC1475758
Abstract Full Text PDF–474K
Intermingling of Chromosome Territories in Interphase Suggests Role in Translocations and Transcription-Dependent Associations
Miguel R Branco, Ana Pombo
PLoS Biol. 2006 May; 4(5): e138. Published online 2006 April 25. doi: 10.1371/journal.pbio.0040138
PMCID:
PMC1440941
Abstract Full Text PDF–447K Supplementary Material
Chromatin structure and gene regulation in T cell development and function
Christopher B. Wilson, Matthias Merkenschlager
Curr Opin Immunol. Author manuscript; available in PMC 2007 March 12.
Published in final edited form as: Curr Opin Immunol. 2006 April; 18(2): 143–151. Published online 2006 February 10. doi: 10.1016/j.coi.2006.01.013
PMCID:
PMC1820769
Abstract Full Text PDF–184K
Simultaneous localization of MLL, AF4 and ENL genes in interphase nuclei by 3D-FISH: MLL translocation revisited
Michaël Gué, Jian-Sheng Sun, Thomas Boudier
BMC Cancer. 2006; 6: 20. Published online 2006 January 24. doi: 10.1186/1471-2407-6-20
PMCID:
PMC1388228
Abstract Full Text PDF–372K
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