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Cross-species comparison of genome-wide expression patterns
Xianghong Jasmine Zhou, Greg Gibson
Genome Biol. 2004; 5(7): 232. Published online 2004 June 21. doi: 10.1186/gb-2004-5-7-232
PMCID:
PMC463279
Abstract Full Text PDF–84K
 Is Cited by the Following 14 Articles in this Archive:
Interspecies Translation of Disease Networks Increases Robustness and Predictive Accuracy
Seyed Yahya Anvar, Allan Tucker, Veronica Vinciotti, Andrea Venema, Gert-Jan B. van Ommen, Silvere M. van der Maarel, Vered Raz, Peter A. C. ‘t Hoen
PLoS Comput Biol. 2011 November; 7(11): e1002258. Published online 2011 November 3. doi: 10.1371/journal.pcbi.1002258
Correction in:
PLoS Comput Biol. 2011 November; 7(11): 10.1371/annotation/fc0b4192-6427-4fb3-b347-c66651adf855.
PMCID:
PMC3207951
Abstract Full Text PDF–1.7M Supplementary Material Correction
The Reconstruction of Condition-Specific Transcriptional Modules Provides New Insights in the Evolution of Yeast AP-1 Proteins
Christel Goudot, Catherine Etchebest, Frédéric Devaux, Gaëlle Lelandais
PLoS One. 2011; 6(6): e20924. Published online 2011 June 9. doi: 10.1371/journal.pone.0020924
PMCID:
PMC3111461
Abstract Full Text PDF–764K Supplementary Material
A Comprehensive Analysis of Gene Expression Evolution Between Humans and Mice
Yupeng Wang, Romdhane Rekaya
Evol Bioinform Online. 2009; 5: 81–90. Published online 2009 July 6.
PMCID:
PMC2747126
Abstract Full Text PDF–568K
Identifying Conserved and Divergent Transcriptional Modules by Cross-species Matrix Decomposition on Microarray Data
Huai Li, Ming Zhan
J Proteomics Bioinform. Author manuscript; available in PMC 2010 February 9.
Published in final edited form as: J Proteomics Bioinform. 2009 March 12; 2: 117–125. doi: 10.4172/jpb.1000068
PMCID:
PMC2817969
Abstract Full Text PDF–452K Supplementary Material
Consistent deregulation of gene expression between human and murine MLL-rearrangement leukemias
Zejuan Li, Roger T. Luo, Shuangli Mi, Miao Sun, Ping Chen, Jingyue Bao, Mary Beth Neilly, Nimanthi Jayathilaka, Deborah S. Johnson, Lili Wang, Catherine Lavau, Yanming Zhang, Charles Tseng, Xiuqing Zhang, Jian Wang, Jun Yu, Huanming Yang, San Ming Wang, Janet D. Rowley, Jianjun Chen, Michael J. Thirman
Cancer Res. Author manuscript; available in PMC 2010 February 1.
Published in final edited form as: Cancer Res. 2009 February 1; 69(3): 1109–1116. Published online 2009 January 20. doi: 10.1158/0008-5472.CAN-08-3381
PMCID:
PMC2633429
Abstract Full Text PDF–1.5M
Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata
Gaëlle Lelandais, Véronique Tanty, Colette Geneix, Catherine Etchebest, Claude Jacq, Frédéric Devaux
Genome Biol. 2008; 9(11): R164. Published online 2008 November 24. doi: 10.1186/gb-2008-9-11-r164
PMCID:
PMC2614496
Abstract Full Text PDF–1.5M Supplementary Material
Evidence-Based Annotation of the Malaria Parasite's Genome Using Comparative Expression Profiling
Yingyao Zhou, Vandana Ramachandran, Kota Arun Kumar, Scott Westenberger, Phillippe Refour, Bin Zhou, Fengwu Li, Jason A. Young, Kaisheng Chen, David Plouffe, Kerstin Henson, Victor Nussenzweig, Jane Carlton, Joseph M. Vinetz, Manoj T. Duraisingh, Elizabeth A. Winzeler
PLoS ONE. 2008; 3(2): e1570. Published online 2008 February 13. doi: 10.1371/journal.pone.0001570
PMCID:
PMC2215772
Abstract Full Text PDF–579K Supplementary Material
Biomolecular network querying: a promising approach in systems biology
Shihua Zhang, Xiang-Sun Zhang, Luonan Chen
BMC Syst Biol. 2008; 2: 5. Published online 2008 January 18. doi: 10.1186/1752-0509-2-5
PMCID:
PMC2245906
Abstract Full Text PDF–534K
The Generation Challenge Programme comparative plant stress-responsive gene catalogue
Samart Wanchana, Supat Thongjuea, Victor Jun Ulat, Mylah Anacleto, Ramil Mauleon, Matthieu Conte, Mathieu Rouard, Manuel Ruiz, Nandini Krishnamurthy, Kimmen Sjolander, Theo van Hintum, Richard M. Bruskiewich
Nucleic Acids Res. 2008 January; 36(Database issue): D943–D946. Published online 2008 January. doi: 10.1093/nar/gkm798
PMCID:
PMC2238985
Abstract Full Text PDF–354K
Simplified ontologies allowing comparison of developmental mammalian gene expression
Adele Kruger, Oliver Hofmann, Piero Carninci, Yoshihide Hayashizaki, Winston Hide
Genome Biol. 2007; 8(10): R229. Published online 2007 October 25. doi: 10.1186/gb-2007-8-10-r229
PMCID:
PMC2246303
Abstract Full Text PDF–596K Supplementary Material
Deciphering modular and dynamic behaviors of transcriptional networks
Ming Zhan
Genomic Med. 2007 September; 1(1-2): 19–28. Published online 2007 May 11. doi: 10.1007/s11568-007-9004-7
PMCID:
PMC2276884
Abstract Full Text PDF–325K
GO-Diff: Mining functional differentiation between EST-based transcriptomes
Zuozhou Chen, Weilin Wang, Xuefeng Bruce Ling, Jane Jijun Liu, Liangbiao Chen
BMC Bioinformatics. 2006; 7: 72. Published online 2006 February 16. doi: 10.1186/1471-2105-7-72
PMCID:
PMC1388240
Abstract Full Text PDF–489K Supplementary Material
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling
H Fang, W Tong, R Perkins, L Shi, H Hong, X Cao, Q Xie, SH Yim, JM Ward, HC Pitot, YP Dragan
BMC Bioinformatics. 2005; 6(Suppl 2): S6. Published online 2005 July 15. doi: 10.1186/1471-2105-6-S2-S6
PMCID:
PMC1637037
Abstract Full Text PDF–408K
Genomes, phylogeny, and evolutionary systems biology
Mónica Medina
Proc Natl Acad Sci U S A. 2005 May 3; 102(Suppl 1): 6630–6635. Published online 2005 April 25. doi: 10.1073/pnas.0501984102
PMCID:
PMC1131869
Abstract Full Text PDF–383K
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