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A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults
Michael Parisi, Rachel Nuttall, Pamela Edwards, James Minor, Daniel Naiman, Jining Lü, Michael Doctolero, Marina Vainer, Cathy Chan, James Malley, Scott Eastman, Brian Oliver
Genome Biol. 2004; 5(6): R40. Published online 2004 June 1. doi: 10.1186/gb-2004-5-6-r40
PMCID:
PMC463073
Abstract Full Text PDF–2.2M Supplementary Material

Is Cited by the Following 73 Articles in this Archive:

Conserved properties of Drosophila and human spermatozoal mRNA repertoires
Bettina E. Fischer, Elizabeth Wasbrough, Lisa A. Meadows, Owen Randlet, Steve Dorus, Timothy L. Karr, Steven Russell
Proc Biol Sci. 2012 July 7; 279(1738): 2636–2644. Published online 2012 February 29. doi: 10.1098/rspb.2012.0153
PMCID:
PMC3350705
Free in PMC on 2013/07/07
Rate of Amino Acid Substitution Is Influenced by the Degree and Conservation of Male-Biased Transcription Over 50 Myr of Drosophila Evolution
Sonja Grath, John Parsch
Genome Biol Evol. 2012; 4(3): 346–359. Published online 2012 February 8. doi: 10.1093/gbe/evs012
PMCID:
PMC3318448
Abstract Full Text PDF–654K
Fine scale analysis of gene expression in Drosophila melanogaster gonads reveals Programmed cell death 4 promotes the differentiation of female germline stem cells
Amy C Cash, Justen Andrews
BMC Dev Biol. 2012; 12: 4. Published online 2012 January 17. doi: 10.1186/1471-213X-12-4
PMCID:
PMC3322342
Abstract Full Text PDF–15M Supplementary Material
Widespread generation of alternative UTRs contributes to sex-specific RNA binding by UNR
Marija Mihailovich, Laurence Wurth, Federico Zambelli, Irina Abaza, Cristina Militti, Francesco M. Mancuso, Guglielmo Roma, Giulio Pavesi, Fátima Gebauer
RNA. 2012 January; 18(1): 53–64. doi: 10.1261/rna.029603.111
PMCID:
PMC3261744
Free in PMC on 2013/01/01
The genomic response to courtship song stimulation in female Drosophila melanogaster
Elina Immonen, Michael G. Ritchie
Proc Biol Sci. 2012 April 7; 279(1732): 1359–1365. Published online 2011 October 5. doi: 10.1098/rspb.2011.1644
PMCID:
PMC3282362
Free in PMC on 2013/04/07
Unique Aspects of Transcription Regulation in Male Germ Cells
Helen White-Cooper, Irwin Davidson
Cold Spring Harb Perspect Biol. 2011 July; 3(7): a002626. doi: 10.1101/cshperspect.a002626
PMCID:
PMC3119912
Free in PMC on 2013/07/01
Transcription Regulation of Sex-Biased Genes during Ontogeny in the Malaria Vector Anopheles gambiae
Kalle Magnusson, Antonio M. Mendes, Nikolai Windbichler, Philippos-Aris Papathanos, Tony Nolan, Tania Dottorini, Ermanno Rizzi, George K. Christophides, Andrea Crisanti
PLoS One. 2011; 6(6): e21572. Published online 2011 June 30. doi: 10.1371/journal.pone.0021572
PMCID:
PMC3128074
Abstract Full Text PDF–975K Supplementary Material
Lipid profiles of female and male Drosophila
Michael Parisi, Renhua Li, Brian Oliver
BMC Res Notes. 2011; 4: 198. Published online 2011 June 15. doi: 10.1186/1756-0500-4-198
PMCID:
PMC3146437
Abstract Full Text PDF–435K Supplementary Material
Cooperative and Antagonistic Contributions of Two Heterochromatin Proteins to Transcriptional Regulation of the Drosophila Sex Determination Decision
Hui Li, Janel Rodriguez, Youngdong Yoo, Momin Mohammed Shareef, RamaKrishna Badugu, Jamila I. Horabin, Rebecca Kellum
PLoS Genet. 2011 June; 7(6): e1002122. Published online 2011 June 9. doi: 10.1371/journal.pgen.1002122
PMCID:
PMC3111545
Abstract Full Text PDF–1.5M Supplementary Material
Genetic basis of wing morphogenesis in Drosophila: sexual dimorphism and non-allometric effects of shape variation
Valeria P Carreira, Ignacio M Soto, Julián Mensch, Juan J Fanara
BMC Dev Biol. 2011; 11: 32. Published online 2011 June 2. doi: 10.1186/1471-213X-11-32
PMCID:
PMC3129315
Abstract Full Text PDF–1.8M Supplementary Material
Genomics of Environmentally Induced Phenotypes in 2 Extremely Plastic Arthropods
Jean-Christophe Simon, Michael E. Pfrender, Ralph Tollrian, Denis Tagu, John K. Colbourne
J Hered. 2011 Sep-Oct; 102(5): 512–525. Published online 2011 April 27. doi: 10.1093/jhered/esr020
PMCID:
PMC3156564
Free in PMC on 2012/09/01
Intralocus sexual conflict resolved through gene duplication
Miguel Gallach, Esther Betrán
Trends Ecol Evol. Author manuscript; available in PMC 2012 May 1.
Published in final edited form as: Trends Ecol Evol. 2011 May; 26(5): 222–228. Published online 2011 March 11. doi: 10.1016/j.tree.2011.02.004
PMCID:
PMC3090214
Abstract Full Text PDF–241K
Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster
Britta Hartmann, Robert Castelo, Belén Miñana, Erin Peden, Marco Blanchette, Donald C. Rio, Ravinder Singh, Juan Valcárcel
RNA. 2011 March; 17(3): 453–468. doi: 10.1261/rna.2460411
PMCID:
PMC3039145
Abstract Full Text PDF–1.0M
Towards a More Nuanced Understanding of the Relationship between Sex-Biased Gene Expression and Rates of Protein-Coding Sequence Evolution
Richard P. Meisel
Mol Biol Evol. 2011 June; 28(6): 1893–1900. Published online 2011 January 12. doi: 10.1093/molbev/msr010
PMCID:
PMC3098513
Free in PMC on 2012/06/01
The Developmental Transcriptome of Drosophila melanogaster
Brenton R. Graveley, Angela N. Brooks, Joseph W. Carlson, Michael O. Duff, Jane M. Landolin, Li Yang, Carlo G. Artieri, Marijke J. van Baren, Nathan Boley, Benjamin W. Booth, James B. Brown, Lucy Cherbas, Carrie A. Davis, Alex Dobin, Renhua Li, Wei Lin, John H. Malone, Nicolas R. Mattiuzzo, David Miller, David Sturgill, Brian B. Tuch, Chris Zaleski, Dayu Zhang, Marco Blanchette, Sandrine Dudoit, Brian Eads, Richard E. Green, Ann Hammonds, Lichun Jiang, Phil Kapranov, Laura Langton, Norbert Perrimon, Jeremy E. Sandler, Kenneth H. Wan, Aarron Willingham, Yu Zhang, Yi Zou, Justen Andrews, Peter J. Bickel, Steven E. Brenner, Michael R. Brent, Peter Cherbas, Thomas R. Gingeras, Roger A. Hoskins, Thomas C. Kaufman, Brian Oliver, Susan E. Celniker
Nature. Author manuscript; available in PMC 2011 September 24.
Published in final edited form as: Nature. 2011 March 24; 471(7339): 473–479. Published online 2010 December 22. doi: 10.1038/nature09715
PMCID:
PMC3075879
Abstract Full Text PDF–897K Supplementary Material
Neighbourhood Continuity Is Not Required for Correct Testis Gene Expression in Drosophila
Lisa A. Meadows, Yuk Sang Chan, John Roote, Steven Russell
PLoS Biol. 2010 November; 8(11): e1000552. Published online 2010 November 30. doi: 10.1371/journal.pbio.1000552
PMCID:
PMC2994658
Abstract Full Text PDF–990K Supplementary Material
Sex in an Evolutionary Perspective: Just Another Reaction Norm
Malin Ah-King, Sören Nylin
Evol Biol. 2010 December; 37(4): 234–246. Published online 2010 November 13. doi: 10.1007/s11692-010-9101-8
PMCID:
PMC2987205
Abstract Full Text PDF–523K
Analyses of Nuclearly Encoded Mitochondrial Genes Suggest Gene Duplication as a Mechanism for Resolving Intralocus Sexually Antagonistic Conflict in Drosophila
Miguel Gallach, Chitra Chandrasekaran, Esther Betrán
Genome Biol Evol. 2010; 2: 835–850. Published online 2010 October 29. doi: 10.1093/gbe/evq069
PMCID:
PMC2995371
Abstract Full Text PDF–328K
The SILAC Fly Allows for Accurate Protein Quantification in Vivo
Matthias D. Sury, Jia-Xuan Chen, Matthias Selbach
Mol Cell Proteomics. 2010 October; 9(10): 2173–2183. Published online 2010 June 5. doi: 10.1074/mcp.M110.000323
PMCID:
PMC2953914
Abstract Full Text Supplementary Material
Germline-dependent gene expression in distant non-gonadal somatic tissues of Drosophila
Michael J Parisi, Vaijayanti Gupta, David Sturgill, James T Warren, Jean-Marc Jallon, John H Malone, Yu Zhang, Lawrence I Gilbert, Brian Oliver
BMC Genomics. 2010; 11: 346. Published online 2010 June 1. doi: 10.1186/1471-2164-11-346
PMCID:
PMC2887422
Abstract Full Text PDF–1.0M Supplementary Material
Evolution and spermatogenesis
Helen White-Cooper, Nina Bausek
Philos Trans R Soc Lond B Biol Sci. 2010 May 27; 365(1546): 1465–1480. doi: 10.1098/rstb.2009.0323
PMCID:
PMC2871925
Abstract Full Text PDF–533K
Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq
Qiang Gan, Iouri Chepelev, Gang Wei, Lama Tarayrah, Kairong Cui, Keji Zhao, Xin Chen
Cell Res. Author manuscript; available in PMC 2011 January 1.
Published in final edited form as: Cell Res. 2010 July; 20(7): 763–783. Published online 2010 May 4. doi: 10.1038/cr.2010.64
PMCID:
PMC2919574
Abstract Full Text PDF–3.1M Supplementary Material
Resolving Intralocus Sexual Conflict: Genetic Mechanisms and Time Frame
Andrew D. Stewart, Alison Pischedda, William R. Rice
J Hered. 2010 Mar-Apr; 101(suppl_1): S94–S99. doi: 10.1093/jhered/esq011
PMCID:
PMC2859891
Abstract Full Text PDF–101K
FlyTED: the Drosophila Testis Gene Expression Database
Jun Zhao, Graham Klyne, Elizabeth Benson, Elin Gudmannsdottir, Helen White-Cooper, David Shotton
Nucleic Acids Res. 2010 January; 38(Database issue): D710–D715. Published online 2010 January. doi: 10.1093/nar/gkp1006
PMCID:
PMC2808924
Abstract Full Text PDF–3.6M
A microarray analysis of sex- and gonad-biased gene expression in the zebrafish: Evidence for masculinization of the transcriptome
Clayton M Small, Ginger E Carney, Qianxing Mo, Marina Vannucci, Adam G Jones
BMC Genomics. 2009; 10: 579. Published online 2009 December 3. doi: 10.1186/1471-2164-10-579
PMCID:
PMC2797025
Abstract Full Text PDF–366K Supplementary Material
Stage-Specific Expression Profiling of Drosophila Spermatogenesis Suggests that Meiotic Sex Chromosome Inactivation Drives Genomic Relocation of Testis-Expressed Genes
Maria D. Vibranovski, Hedibert F. Lopes, Timothy L. Karr, Manyuan Long
PLoS Genet. 2009 November; 5(11): e1000731. Published online 2009 November 20. doi: 10.1371/journal.pgen.1000731
PMCID:
PMC2770318
Abstract Full Text PDF–611K Supplementary Material
Regulatory Divergence in Drosophila melanogaster and D. simulans, a Genomewide Analysis of Allele-Specific Expression
Rita M. Graze, Lauren M. McIntyre, Bradley J. Main, Marta L. Wayne, Sergey V. Nuzhdin
Genetics. 2009 October; 183(2): 547–561. doi: 10.1534/genetics.109.105957
PMCID:
PMC2766316
Abstract Full Text PDF–1.2M
Genomic analysis of a sexually-selected character: EST sequencing and microarray analysis of eye-antennal imaginal discs in the stalk-eyed fly Teleopsis dalmanni (Diopsidae)
Richard H Baker, Jenna Morgan, Xianhui Wang, Jeffrey L Boore, Gerald S Wilkinson
BMC Genomics. 2009; 10: 361. Published online 2009 August 5. doi: 10.1186/1471-2164-10-361
PMCID:
PMC2737001
Abstract Full Text PDF–1.4M Supplementary Material
Gene expression during Drosophila melanogaster egg development before and after reproductive diapause
Dean A Baker, Steven Russell
BMC Genomics. 2009; 10: 242. Published online 2009 May 24. doi: 10.1186/1471-2164-10-242
PMCID:
PMC2700134
Abstract Full Text PDF–933K Supplementary Material
General gene movement off the X chromosome in the Drosophila genus
Maria D. Vibranovski, Yong Zhang, Manyuan Long
Genome Res. 2009 May; 19(5): 897–903. doi: 10.1101/gr.088609.108
PMCID:
PMC2675978
Abstract Full Text PDF–199K
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