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Transcriptional regulation of protein complexes in yeast
Nicolas Simonis, Jacques van Helden, George N Cohen, Shoshana J Wodak
Genome Biol. 2004; 5(5): R33. Published online 2004 April 30.
PMCID:
PMC416469
Abstract Full Text PDF–433K Supplementary Material

Is Cited by the Following 9 Articles in this Archive:

Composite functional module inference: detecting cooperation between transcriptional regulation and protein interaction by mantel test
Chao Wu, Fan Zhang, Xia Li, Shihua Zhang, Jiang Li, Fei Su, Kongning Li, Yuqing Yan
BMC Syst Biol. 2010; 4: 82. Published online 2010 June 10. doi: 10.1186/1752-0509-4-82
PMCID:
PMC2901225
Abstract Full Text PDF–2.9M Supplementary Material
Embedding mRNA Stability in Correlation Analysis of Time-Series Gene Expression Data
Lorenzo Farina, Alberto De Santis, Samanta Salvucci, Giorgio Morelli, Ida Ruberti
PLoS Comput Biol. 2008 August; 4(8): e1000141. Published online 2008 August 1. doi: 10.1371/journal.pcbi.1000141
PMCID:
PMC2453326
Abstract Full Text PDF–725K Supplementary Material
Network-based prediction of protein function
Roded Sharan, Igor Ulitsky, Ron Shamir
Mol Syst Biol. 2007; 3: 88. Published online 2007 March 13. doi: 10.1038/msb4100129
PMCID:
PMC1847944
Abstract Full Text PDF–353K
Transcriptional regulation of protein complexes within and across species
Kai Tan, Tomer Shlomi, Hoda Feizi, Trey Ideker, Roded Sharan
Proc Natl Acad Sci U S A. 2007 January 23; 104(4): 1283–1288. Published online 2007 January 16. doi: 10.1073/pnas.0606914104
PMCID:
PMC1783126
Abstract Full Text PDF–1.0M Supplementary Material
Evaluation of clustering algorithms for protein-protein interaction networks
Sylvain Brohée, Jacques van Helden
BMC Bioinformatics. 2006; 7: 488. Published online 2006 November 6. doi: 10.1186/1471-2105-7-488
PMCID:
PMC1637120
Abstract Full Text PDF–1.2M Supplementary Material
Characterization and prediction of protein–protein interactions within and between complexes
Einat Sprinzak, Yael Altuvia, Hanah Margalit
Proc Natl Acad Sci U S A. 2006 October 3; 103(40): 14718–14723. Published online 2006 September 26. doi: 10.1073/pnas.0603352103
PMCID:
PMC1595418
Abstract Full Text PDF–551K Supplementary Material
Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network
Lan V Zhang, Oliver D King, Sharyl L Wong, Debra S Goldberg, Amy HY Tong, Guillaume Lesage, Brenda Andrews, Howard Bussey, Charles Boone, Frederick P Roth
J Biol. 2005; 4(2): 6. Published online 2005 June 1. doi: 10.1186/jbiol23
PMCID:
PMC1175995
Abstract Full Text PDF–190K Supplementary Material
Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals
Sven Nelander, Erik Larsson, Erik Kristiansson, Robert Månsson, Olle Nerman, Mikael Sigvardsson, Petter Mostad, Per Lindahl
BMC Genomics. 2005; 6: 68. Published online 2005 May 9. doi: 10.1186/1471-2164-6-68
PMCID:
PMC1134656
Abstract Full Text PDF–828K Supplementary Material
How biologically relevant are interaction-based modules in protein networks?
Juan F Poyatos, Laurence D Hurst
Genome Biol. 2004; 5(11): R93. Published online 2004 November 1. doi: 10.1186/gb-2004-5-11-r93
PMCID:
PMC545784
Abstract Full Text PDF–538K Supplementary Material
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