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Comparative genomics of gene-family size in closely related bacteria
Ravindra Pushker, Alex Mira, Francisco Rodríguez-Valera
Genome Biol. 2004; 5(4): R27. Published online 2004 March 18.
PMCID:
PMC395786
Abstract Full Text PDF–1.1M Supplementary Material
 Is Cited by the Following 16 Articles in this Archive:
Thousands of Rab GTPases for the Cell Biologist
Yoan Diekmann, Elsa Seixas, Marc Gouw, Filipe Tavares-Cadete, Miguel C. Seabra, José B. Pereira-Leal
PLoS Comput Biol. 2011 October; 7(10): e1002217. Published online 2011 October 13. doi: 10.1371/journal.pcbi.1002217
PMCID:
PMC3192815
Abstract Full Text PDF–1.4M Supplementary Material
Genome of Mycoplasma haemofelis, unraveling its strategies for survival and persistence
Andrea P Santos, Ana MS Guimaraes, Naíla C do Nascimento, Phillip J SanMiguel, Samuel W Martin, Joanne B Messick
Vet Res. 2011; 42(1): 102. Published online 2011 September 21. doi: 10.1186/1297-9716-42-102
PMCID:
PMC3196708
Abstract Full Text PDF–1.7M Supplementary Material
Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits
John Larsson, Johan AA Nylander, Birgitta Bergman
BMC Evol Biol. 2011; 11: 187. Published online 2011 June 30. doi: 10.1186/1471-2148-11-187
PMCID:
PMC3141437
Abstract Full Text PDF–1.2M Supplementary Material
Loss of Genetic Redundancy in Reductive Genome Evolution
André G. Mendonça, Renato J. Alves, José B. Pereira-Leal
PLoS Comput Biol. 2011 February; 7(2): e1001082. Published online 2011 February 17. doi: 10.1371/journal.pcbi.1001082
PMCID:
PMC3040653
Abstract Full Text PDF–798K Supplementary Material
Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes
Todd J. Treangen, Eduardo P. C. Rocha
PLoS Genet. 2011 January; 7(1): e1001284. Published online 2011 January 27. doi: 10.1371/journal.pgen.1001284
PMCID:
PMC3029252
Abstract Full Text PDF–713K Supplementary Material
Gene duplications in prokaryotes can be associated with environmental adaptation
Marit S Bratlie, Jostein Johansen, Brad T Sherman, Da Wei Huang, Richard A Lempicki, Finn Drabløs
BMC Genomics. 2010; 11: 588. Published online 2010 October 20. doi: 10.1186/1471-2164-11-588
PMCID:
PMC3091735
Abstract Full Text PDF–948K Supplementary Material
Numbers of genes in the NBS and RLK families vary by more than four-fold within a plant species and are regulated by multiple factors
Meiping Zhang, Yen-Hsuan Wu, Mi-Kyung Lee, Yun-Hua Liu, Ying Rong, Teofila S. Santos, Chengcang Wu, Fangming Xie, Randall L. Nelson, Hong-Bin Zhang
Nucleic Acids Res. 2010 October; 38(19): 6513–6525. Published online 2010 June 11. doi: 10.1093/nar/gkq524
PMCID:
PMC2965241
Abstract Full Text PDF–333K Supplementary Material
Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics
Luis David Alcaraz, Gabriel Moreno-Hagelsieb, Luis E Eguiarte, Valeria Souza, Luis Herrera-Estrella, Gabriela Olmedo
BMC Genomics. 2010; 11: 332. Published online 2010 May 26. doi: 10.1186/1471-2164-11-332
PMCID:
PMC2890564
Abstract Full Text PDF–1.7M Supplementary Material
Lateral Transfer of Genes and Gene Fragments in Prokaryotes
Cheong Xin Chan, Robert G. Beiko, Aaron E. Darling, Mark A. Ragan
Genome Biol Evol. 2009; 1: 429–438. Published online 2009 November 4. doi: 10.1093/gbe/evp044
PMCID:
PMC2817436
Abstract Full Text PDF–482K Supplementary Material
Implications of high level pseudogene transcription in Mycobacterium leprae
Diana L Williams, Richard A Slayden, Amol Amin, Alejandra N Martinez, Tana L Pittman, Alex Mira, Anirban Mitra, Valakunja Nagaraja, Norman E Morrison, Milton Moraes, Thomas P Gillis
BMC Genomics. 2009; 10: 397. Published online 2009 August 25. doi: 10.1186/1471-2164-10-397
PMCID:
PMC2753549
Abstract Full Text PDF–595K Supplementary Material
Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis
Ming Fang, Wencke-Maria Zeisberg, Ciaran Condon, Vasily Ogryzko, Antoine Danchin, Undine Mechold
Nucleic Acids Res. 2009 August; 37(15): 5114–5125. Published online 2009 August. doi: 10.1093/nar/gkp527
PMCID:
PMC2731908
Abstract Full Text PDF–3.2M Supplementary Material
The genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment
Luis David Alcaraz, Gabriela Olmedo, Germán Bonilla, René Cerritos, Gustavo Hernández, Alfredo Cruz, Enrique Ramírez, Catherine Putonti, Beatriz Jiménez, Eva Martínez, Varinia López, Jacqueline L. Arvizu, Francisco Ayala, Francisco Razo, Juan Caballero, Janet Siefert, Luis Eguiarte, Jean-Philippe Vielle, Octavio Martínez, Valeria Souza, Alfredo Herrera-Estrella, Luis Herrera-Estrella
Proc Natl Acad Sci U S A. 2008 April 15; 105(15): 5803–5808. Published online 2008 April 11. doi: 10.1073/pnas.0800981105
PMCID:
PMC2311347
Abstract Full Text PDF–730K Supplementary Material
A process for analysis of microarray comparative genomics hybridisation studies for bacterial genomes
Ben Carter, Guanghui Wu, Martin J Woodward, Muna F Anjum
BMC Genomics. 2008; 9: 53. Published online 2008 January 29. doi: 10.1186/1471-2164-9-53
PMCID:
PMC2262894
Abstract Full Text PDF–1.1M
EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information
Guohui Ding, Yan Sun, Hong Li, Zhen Wang, Haiwei Fan, Chuan Wang, Dan Yang, Yixue Li
Nucleic Acids Res. 2008 January; 36(Database issue): D255–D262. Published online 2008 January. doi: 10.1093/nar/gkm924
PMCID:
PMC2238967
Abstract Full Text PDF–7.0M
Modelling prokaryote gene content
Matthew Spencer, Edward Susko, Andrew J. Roger
Evol Bioinform Online. 2006; 2: 157–178. Published online 2007 February 5.
PMCID:
PMC2674660
Abstract Full Text PDF–631K
Evolution of sensory complexity recorded in a myxobacterial genome
B. S. Goldman, W. C. Nierman, D. Kaiser, S. C. Slater, A. S. Durkin, J. A. Eisen, C. M. Ronning, W. B. Barbazuk, M. Blanchard, C. Field, C. Halling, G. Hinkle, O. Iartchuk, H. S. Kim, C. Mackenzie, R. Madupu, N. Miller, A. Shvartsbeyn, S. A. Sullivan, M. Vaudin, R. Wiegand, H. B. Kaplan
Proc Natl Acad Sci U S A. 2006 October 10; 103(41): 15200–15205. Published online 2006 October 2. doi: 10.1073/pnas.0607335103
Correction in:
Proc Natl Acad Sci U S A. 2006 December 19; 103(51): 19605.
PMCID:
PMC1622800
Abstract Full Text PDF–1.1M Supplementary Material Correction
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