My NCBISign In
Hotspots of mammalian chromosomal evolution
Jeffrey A Bailey, Robert Baertsch, W James Kent, David Haussler, Evan E Eichler
Genome Biol. 2004; 5(4): R23. Published online 2004 March 8.
PMCID:
PMC395782
Abstract Full Text PDF–249K Supplementary Material

Is Cited by the Following 57 Articles in this Archive:

Genomic Hypomethylation in the Human Germline Associates with Selective Structural Mutability in the Human Genome
Jian Li, R. Alan Harris, Sau Wai Cheung, Cristian Coarfa, Mira Jeong, Margaret A. Goodell, Lisa D. White, Ankita Patel, Sung-Hae Kang, Chad Shaw, A. Craig Chinault, Tomasz Gambin, Anna Gambin, James R. Lupski, Aleksandar Milosavljevic
PLoS Genet. 2012 May; 8(5): e1002692. Published online 2012 May 17. doi: 10.1371/journal.pgen.1002692
PMCID:
PMC3355074
Abstract Full Text PDF–1.0M Supplementary Material
Using Paleogenomics to Study the Evolution of Gene Families: Origin and Duplication History of the Relaxin Family Hormones and Their Receptors
Sergey Yegorov, Sara Good
PLoS One. 2012; 7(3): e32923. Published online 2012 March 21. doi: 10.1371/journal.pone.0032923
PMCID:
PMC3310001
Abstract Full Text PDF–775K Supplementary Material
Genome dedoubling by DCJ and reversal
Antoine Thomas, Jean-Stéphane Varré, Aïda Ouangraoua
BMC Bioinformatics. 2011; 12(Suppl 9): S20. Published online 2011 October 5. doi: 10.1186/1471-2105-12-S9-S20
PMCID:
PMC3283308
Abstract Full Text PDF–439K Supplementary Material
Comparative genomics reveals birth and death of fragile regions in mammalian evolution
Max A Alekseyev, Pavel A Pevzner
Genome Biol. 2010; 11(11): R117. Published online 2010 November 30. doi: 10.1186/gb-2010-11-11-r117
PMCID:
PMC3156956
Abstract Full Text PDF–529K Supplementary Material
Genome Landscape and Evolutionary Plasticity of Chromosomes in Malaria Mosquitoes
Ai Xia, Maria V. Sharakhova, Scotland C. Leman, Zhijian Tu, Jeffrey A. Bailey, Christopher D. Smith, Igor V. Sharakhov
PLoS One. 2010; 5(5): e10592. Published online 2010 May 12. doi: 10.1371/journal.pone.0010592
PMCID:
PMC2868863
Abstract Full Text PDF–809K Supplementary Material
Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome
Aaron R. Quinlan, Royden A. Clark, Svetlana Sokolova, Mitchell L. Leibowitz, Yujun Zhang, Matthew E. Hurles, Joshua C. Mell, Ira M. Hall
Genome Res. 2010 May; 20(5): 623–635. doi: 10.1101/gr.102970.109
PMCID:
PMC2860164
Abstract Full Text PDF–998K
Chromosomal evolution in the plant family Solanaceae
Feinan Wu, Steven D Tanksley
BMC Genomics. 2010; 11: 182. Published online 2010 March 17. doi: 10.1186/1471-2164-11-182
PMCID:
PMC2847972
Abstract Full Text PDF–481K Supplementary Material
Copy number abnormalities in sporadic canine colorectal cancers
Jie Tang, Shoshona Le, Liang Sun, Xiuzhen Yan, Mucheng Zhang, Jennifer MacLeod, Bruce LeRoy, Nicole Northrup, Angela Ellis, Timothy J. Yeatman, Yanchun Liang, Michael E. Zwick, Shaying Zhao
Genome Res. 2010 March; 20(3): 341–350. doi: 10.1101/gr.092726.109
PMCID:
PMC2840980
Abstract Full Text PDF–521K
Analysis of recent segmental duplications in the bovine genome
George E Liu, Mario Ventura, Angelo Cellamare, Lin Chen, Ze Cheng, Bin Zhu, Congjun Li, Jiuzhou Song, Evan E Eichler
BMC Genomics. 2009; 10: 571. Published online 2009 December 1. doi: 10.1186/1471-2164-10-571
PMCID:
PMC2796684
Abstract Full Text PDF–1.3M Supplementary Material
The Transposon Galileo Generates Natural Chromosomal Inversions in Drosophila by Ectopic Recombination
Alejandra Delprat, Bàrbara Negre, Marta Puig, Alfredo Ruiz
PLoS One. 2009; 4(11): e7883. Published online 2009 November 18. doi: 10.1371/journal.pone.0007883
PMCID:
PMC2775673
Abstract Full Text PDF–714K Supplementary Material
Every genome sequence needs a good map
Harris A. Lewin, Denis M. Larkin, Joan Pontius, Stephen J. O'Brien
Genome Res. 2009 November; 19(11): 1925–1928. doi: 10.1101/gr.094557.109
PMCID:
PMC2775595
Full Text PDF–84K
The origins and impact of primate segmental duplications
Tomas Marques-Bonet, Santhosh Girirajan, Evan E. Eichler
Trends Genet. Author manuscript; available in PMC 2010 April 1.
Published in final edited form as: Trends Genet. 2009 October; 25(10): 443–454. Published online 2009 September 30. doi: 10.1016/j.tig.2009.08.002
PMCID:
PMC2847396
Abstract Full Text PDF–2.5M
Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation
Claire Lemaitre, Lamia Zaghloul, Marie-France Sagot, Christian Gautier, Alain Arneodo, Eric Tannier, Benjamin Audit
BMC Genomics. 2009; 10: 335. Published online 2009 July 24. doi: 10.1186/1471-2164-10-335
PMCID:
PMC2722678
Abstract Full Text PDF–382K Supplementary Material
Evolutionary Breakpoints in the Gibbon Suggest Association between Cytosine Methylation and Karyotype Evolution
Lucia Carbone, R. Alan Harris, Gery M. Vessere, Alan R. Mootnick, Sean Humphray, Jane Rogers, Sung K. Kim, Jeffrey D. Wall, David Martin, Jerzy Jurka, Aleksandar Milosavljevic, Pieter J. de Jong
PLoS Genet. 2009 June; 5(6): e1000538. Published online 2009 June 26. doi: 10.1371/journal.pgen.1000538
PMCID:
PMC2695003
Abstract Full Text PDF–834K Supplementary Material
Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories
Denis M. Larkin, Greg Pape, Ravikiran Donthu, Loretta Auvil, Michael Welge, Harris A. Lewin
Genome Res. 2009 May; 19(5): 770–777. doi: 10.1101/gr.086546.108
PMCID:
PMC2675965
Abstract Full Text PDF–490K
Breakpoint graphs and ancestral genome reconstructions
Max A. Alekseyev, Pavel A. Pevzner
Genome Res. 2009 May; 19(5): 943–957. doi: 10.1101/gr.082784.108
PMCID:
PMC2675983
Abstract Full Text PDF–1.8M
Sequencing human–gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites
Santhosh Girirajan, Lin Chen, Tina Graves, Tomas Marques-Bonet, Mario Ventura, Catrina Fronick, Lucinda Fulton, Mariano Rocchi, Robert S. Fulton, Richard K. Wilson, Elaine R. Mardis, Evan E. Eichler
Genome Res. 2009 February; 19(2): 178–190. doi: 10.1101/gr.086041.108
PMCID:
PMC2652201
Abstract Full Text PDF–2.6M
Reduced purifying selection prevails over positive selection in human copy number variant evolution
Duc-Quang Nguyen, Caleb Webber, Jayne Hehir-Kwa, Rolph Pfundt, Joris Veltman, Chris P. Ponting
Genome Res. 2008 November; 18(11): 1711–1723. doi: 10.1101/gr.077289.108
PMCID:
PMC2577867
Abstract Full Text PDF–672K
Retrocopy contributions to the evolution of the human genome
Robert Baertsch, Mark Diekhans, W James Kent, David Haussler, Jürgen Brosius
BMC Genomics. 2008; 9: 466. Published online 2008 October 8. doi: 10.1186/1471-2164-9-466
PMCID:
PMC2584115
Abstract Full Text PDF–1.0M Supplementary Material
Explaining human uniqueness: genome interactions with environment, behaviour and culture
Ajit Varki, Daniel H. Geschwind, Evan E. Eichler
Nat Rev Genet. Author manuscript; available in PMC 2009 October 3.
Published in final edited form as: Nat Rev Genet. 2008 October; 9(10): 749–763. doi: 10.1038/nrg2428
PMCID:
PMC2756412
Abstract Full Text PDF–1.5M
The genomic distribution of intraspecific and interspecific sequence divergence of human segmental duplications relative to human/chimpanzee chromosomal rearrangements
Tomàs Marques-Bonet, Ze Cheng, Xinwei She, Evan E Eichler, Arcadi Navarro
BMC Genomics. 2008; 9: 384. Published online 2008 August 12. doi: 10.1186/1471-2164-9-384
PMCID:
PMC2542386
Abstract Full Text PDF–427K Supplementary Material
DupMasker: A tool for annotating primate segmental duplications
Zhaoshi Jiang, Robert Hubley, Arian Smit, Evan E. Eichler
Genome Res. 2008 August; 18(8): 1362–1368. doi: 10.1101/gr.078477.108
PMCID:
PMC2493431
Abstract Full Text PDF–940K
A high-resolution radiation hybrid map of rhesus macaque chromosome 5 identifies rearrangements in the genome assembly
Genesio M. Karere, Lutz Froenicke, Lee Millon, James E. Womack, Leslie A. Lyons
Genomics. Author manuscript; available in PMC 2009 October 1.
Published in final edited form as: Genomics. 2008 October; 92(4): 210–218. Published online 2008 July 31. doi: 10.1016/j.ygeno.2008.05.013
PMCID:
PMC2605074
Abstract Full Text PDF–2.2M Supplementary Material
Sequence signatures of a recent chromosomal rearrangement in Drosophila mojavensis
Daniel E. Runcie, Mohamed A. F. Noor
Genetica. Author manuscript; available in PMC 2010 May 1.
Published in final edited form as: Genetica. 2009 May; 136(1): 5–11. Published online 2008 July 26. doi: 10.1007/s10709-008-9296-0
PMCID:
PMC2664395
Abstract Full Text PDF–406K Supplementary Material
A Gene-Based Genetic Linkage Map of the Collared Flycatcher (Ficedula albicollis) Reveals Extensive Synteny and Gene-Order Conservation During 100 Million Years of Avian Evolution
Niclas Backström, Nikoletta Karaiskou, Erica H. Leder, Lars Gustafsson, Craig R. Primmer, Anna Qvarnström, Hans Ellegren
Genetics. 2008 July; 179(3): 1479–1495. doi: 10.1534/genetics.108.088195
PMCID:
PMC2475748
Abstract Full Text PDF–403K
Evolutionary dynamics of segmental duplications from human Y-chromosomal euchromatin/heterochromatin transition regions
Stefan Kirsch, Claudia Münch, Zhaoshi Jiang, Ze Cheng, Lin Chen, Christiane Batz, Evan E. Eichler, Werner Schempp
Genome Res. 2008 July; 18(7): 1030–1042. doi: 10.1101/gr.076711.108
PMCID:
PMC2493392
Abstract Full Text PDF–1.0M
Precise detection of rearrangement breakpoints in mammalian chromosomes
Claire Lemaitre, Eric Tannier, Christian Gautier, Marie-France Sagot
BMC Bioinformatics. 2008; 9: 286. Published online 2008 June 18. doi: 10.1186/1471-2105-9-286
PMCID:
PMC2443379
Abstract Full Text PDF–427K Supplementary Material
Mouse Segmental Duplication and Copy-Number Variation
Xinwei She, Ze Cheng, Sebastian Zöllner, Deanna M. Church, Evan E. Eichler
Nat Genet. Author manuscript; available in PMC 2009 January 1.
Published in final edited form as: Nat Genet. 2008 July; 40(7): 909–914. Published online 2008 May 22. doi: 10.1038/ng.172
PMCID:
PMC2574762
Abstract Full Text PDF–1.0M Supplementary Material
Coexpression of Linked Genes in Mammalian Genomes Is Generally Disadvantageous
Ben-Yang Liao, Jianzhi Zhang
Mol Biol Evol. 2008 August; 25(8): 1555–1565. Published online 2008 April 24. doi: 10.1093/molbev/msn101
PMCID:
PMC2734128
Abstract Full Text PDF–580K Supplementary Material
Hominoid chromosomal rearrangements on 17q map to complex regions of segmental duplication
Maria Francesca Cardone, Zhaoshi Jiang, Pietro D'Addabbo, Nicoletta Archidiacono, Mariano Rocchi, Evan E Eichler, Mario Ventura
Genome Biol. 2008; 9(2): R28. Published online 2008 February 7. doi: 10.1186/gb-2008-9-2-r28
PMCID:
PMC2374708
Abstract Full Text PDF–769K Supplementary Material
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