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Nonsense-mediated mRNA decay: from vacuum cleaner to Swiss army knife
Gabriele Neu-Yilik, Niels H Gehring, Matthias W Hentze, Andreas E Kulozik
Genome Biol. 2004; 5(4): 218. Published online 2004 March 30.
PMCID:
PMC395777
Abstract Full Text PDF–227K
 Is Cited by the Following 19 Articles in this Archive:
A Detailed History of Intron-rich Eukaryotic Ancestors Inferred from a Global Survey of 100 Complete Genomes
Miklos Csuros, Igor B. Rogozin, Eugene V. Koonin
PLoS Comput Biol. 2011 September; 7(9): e1002150. Published online 2011 September 15. doi: 10.1371/journal.pcbi.1002150
PMCID:
PMC3174169
Abstract Full Text PDF–1.5M Supplementary Material
Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay
Nicholas J McGlincy, Lit-Yeen Tan, Nicodeme Paul, Mihaela Zavolan, Kathryn S Lilley, Christopher WJ Smith
BMC Genomics. 2010; 11: 565. Published online 2010 October 14. doi: 10.1186/1471-2164-11-565
PMCID:
PMC3091714
Abstract Full Text PDF–1.0M Supplementary Material
Genome and proteome annotation: organization, interpretation and integration
Gabrielle A. Reeves, David Talavera, Janet M. Thornton
J R Soc Interface. 2009 February 6; 6(31): 129–147. Published online 2008 November 11. doi: 10.1098/rsif.2008.0341
PMCID:
PMC2658791
Abstract Full Text PDF–570K
Splice-mediated Variants of Proteins (SpliVaP) – data and characterization of changes in signatures among protein isoforms due to alternative splicing
Matteo Floris, Massimiliano Orsini, Thangavel Alphonse Thanaraj
BMC Genomics. 2008; 9: 453. Published online 2008 October 2. doi: 10.1186/1471-2164-9-453
PMCID:
PMC2573899
Abstract Full Text PDF–576K Supplementary Material
NOVEL mRNA ISOFORMS OF THE SODIUM CHANNELS Nav1.2, Nav1.3 AND Nav1.7 ENCODE PREDICTED TWO-DOMAIN, TRUNCATED PROTEINS
N. C. H. KERR, F. E. HOLMES, D. WYNICK
Neuroscience. Author manuscript; available in PMC 2009 August 14.
Published in final edited form as: Neuroscience. 2008 August 26; 155(3): 797–808. Published online 2008 May 6. doi: 10.1016/j.neuroscience.2008.04.060
PMCID:
PMC2726981
Abstract Full Text PDF–844K
Cross-kingdom patterns of alternative splicing and splice recognition
Abigail M McGuire, Matthew D Pearson, Daniel E Neafsey, James E Galagan
Genome Biol. 2008; 9(3): R50. Published online 2008 March 5. doi: 10.1186/gb-2008-9-3-r50
PMCID:
PMC2397502
Abstract Full Text PDF–508K Supplementary Material
3′ end mRNA processing: molecular mechanisms and implications for health and disease
Sven Danckwardt, Matthias W Hentze, Andreas E Kulozik
EMBO J. 2008 February 6; 27(3): 482–498. doi: 10.1038/sj.emboj.7601932
PMCID:
PMC2241648
Abstract Full Text PDF–589K
The functional modulation of epigenetic regulators by alternative splicing
Sergio Lois, Noemí Blanco, Marian Martínez-Balbás, Xavier de la Cruz
BMC Genomics. 2007; 8: 252. Published online 2007 July 25. doi: 10.1186/1471-2164-8-252
PMCID:
PMC1949830
Abstract Full Text PDF–714K Supplementary Material
Selective Translational Repression of Truncated Proteins from Frameshift Mutation-Derived mRNAs in Tumors
Kwon Tae You, Long Shan Li, Nam-Gyun Kim, Hyun Ju Kang, Kwi Hye Koh, Yong-Joon Chwae, Kyoung Mi Kim, Yoon Ki Kim, Sung Mi Park, Sung Key Jang, Hoguen Kim
PLoS Biol. 2007 May; 5(5): e109. Published online 2007 April 24. doi: 10.1371/journal.pbio.0050109
PMCID:
PMC1854916
Abstract Full Text PDF–649K Supplementary Material
An alternative branch of the nonsense-mediated decay pathway
Wai-Kin Chan, Lulu Huang, Jayanthi P Gudikote, Yao-Fu Chang, J Saadi Imam, James A MacLean, II, Miles F Wilkinson
EMBO J. 2007 April 4; 26(7): 1820–1830. Published online 2007 March 15. doi: 10.1038/sj.emboj.7601628
PMCID:
PMC1847659
Abstract Full Text PDF–519K Supplementary Material
Functions of the Nonsense-Mediated mRNA Decay Pathway in Drosophila Development
Mark M Metzstein, Mark A Krasnow
PLoS Genet. 2006 December; 2(12): e180. Prepublished online 2006 September 6. Published online 2006 December 29. doi: 10.1371/journal.pgen.0020180
PMCID:
PMC1756896
Abstract Full Text PDF–1.5M Supplementary Material
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
Matthew A Campbell, Brian J Haas, John P Hamilton, Stephen M Mount, C Robin Buell
BMC Genomics. 2006; 7: 327. Published online 2006 December 28. doi: 10.1186/1471-2164-7-327
PMCID:
PMC1769492
Abstract Full Text PDF–1.0M Supplementary Material
Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression
Qun Pan, Arneet L. Saltzman, Yoon Ki Kim, Christine Misquitta, Ofer Shai, Lynne E. Maquat, Brendan J. Frey, Benjamin J. Blencowe
Genes Dev. 2006 January 15; 20(2): 153–158. doi: 10.1101/gad.1382806
PMCID:
PMC1356107
Abstract Full Text PDF–278K
A 3′ UTR sequence stabilizes termination codons in the unspliced RNA of Rous sarcoma virus
JASON E. WEIL, KAREN L. BEEMON
RNA. 2006 January; 12(1): 102–110. doi: 10.1261/rna.2129806
PMCID:
PMC1370890
Abstract Full Text PDF–607K
Sequence conservation, relative isoform frequencies, and nonsense-mediated decay in evolutionarily conserved alternative splicing
Daehyun Baek, Phil Green
Proc Natl Acad Sci U S A. 2005 September 6; 102(36): 12813–12818. Published online 2005 August 25. doi: 10.1073/pnas.0506139102
PMCID:
PMC1192826
Abstract Full Text PDF–482K Supplementary Material
Exon Inclusion Is Dependent on Predictable Exonic Splicing Enhancers
Xiang H.-F. Zhang, Thaned Kangsamaksin, Mann S. P. Chao, Joydeep K. Banerjee, Lawrence A. Chasin
Mol Cell Biol. 2005 August; 25(16): 7323–7332. doi: 10.1128/MCB.25.16.7323-7332.2005
PMCID:
PMC1190244
Abstract Full Text PDF–692K
Stress granules and processing bodies are dynamically linked sites of mRNP remodeling
Nancy Kedersha, Georg Stoecklin, Maranatha Ayodele, Patrick Yacono, Jens Lykke-Andersen, Marvin J. Fritzler, Donalyn Scheuner, Randal J. Kaufman, David E. Golan, Paul Anderson
J Cell Biol. 2005 June 20; 169(6): 871–884. doi: 10.1083/jcb.200502088
Correction in:
J Cell Biol. 2005 August 29; 170(5): 847.
PMCID:
PMC2171635
Abstract Full Text PDF–5.6M Correction
A minor alternative transcript of the fumarylacetoacetate hydrolase gene produces a protein despite being likely subjected to nonsense-mediated mRNA decay
Natacha Dreumont, Antonella Maresca, Jean-François Boisclair-Lachance, Anne Bergeron, Robert M Tanguay
BMC Mol Biol. 2005; 6: 1. Published online 2005 January 7. doi: 10.1186/1471-2199-6-1
PMCID:
PMC546004
Abstract Full Text PDF–480K
Computational definition of sequence motifs governing constitutive exon splicing
Xiang H-F. Zhang, Lawrence A. Chasin
Genes Dev. 2004 June 1; 18(11): 1241–1250. doi: 10.1101/gad.1195304
PMCID:
PMC420350
Abstract Full Text PDF–254K
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