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Exploratory differential gene expression analysis in microarray experiments with no or limited replication
Alexander V Loguinov, I Saira Mian, Chris D Vulpe
Genome Biol. 2004; 5(3): R18. Published online 2004 March 1. doi: 10.1186/gb-2004-5-3-r18
PMCID:
PMC395768
Abstract Full Text PDF–15M Supplementary Material
 Is Cited by the Following 9 Articles in this Archive:
Linking mechanistic and behavioral responses to sublethal esfenvalerate exposure in the endangered delta smelt; Hypomesus transpacificus (Fam. Osmeridae)
Richard E Connon, Juergen Geist, Janice Pfeiff, Alexander V Loguinov, Leandro S D'Abronzo, Henri Wintz, Christopher D Vulpe, Inge Werner
BMC Genomics. 2009; 10: 608. Published online 2009 December 15. doi: 10.1186/1471-2164-10-608
PMCID:
PMC2806348
Abstract Full Text PDF–470K
Comparative Functional Genomic Analysis Identifies Distinct and Overlapping Sets of Genes Required for Resistance to Monomethylarsonous Acid (MMAIII) and Arsenite (AsIII) in Yeast
William J. Jo, Alex Loguinov, Henri Wintz, Michelle Chang, Allan H. Smith, Dave Kalman, Luoping Zhang, Martyn T. Smith, Chris D. Vulpe
Toxicol Sci. 2009 October; 111(2): 424–436. Published online 2009 July 27. doi: 10.1093/toxsci/kfp162
PMCID:
PMC2742584
Abstract Full Text PDF–954K Supplementary Material
Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae
William J Jo, Jeung Hyoun Kim, Eric Oh, Daniel Jaramillo, Patricia Holman, Alex V Loguinov, Adam P Arkin, Corey Nislow, Guri Giaever, Chris D Vulpe
BMC Genomics. 2009; 10: 130. Published online 2009 March 25. doi: 10.1186/1471-2164-10-130
PMCID:
PMC2669097
Abstract Full Text PDF–1.6M Supplementary Material
A novel application of quantile regression for identification of biomarkers exemplified by equine cartilage microarray data
Liping Huang, Wenying Zhu, Christopher P Saunders, James N MacLeod, Mai Zhou, Arnold J Stromberg, Arne C Bathke
BMC Bioinformatics. 2008; 9: 300. Published online 2008 July 2. doi: 10.1186/1471-2105-9-300
PMCID:
PMC2474617
Abstract Full Text PDF–567K
Parasite Burden and CD36-Mediated Sequestration Are Determinants of Acute Lung Injury in an Experimental Malaria Model
Fiona E. Lovegrove, Sina A. Gharib, Lourdes Peña-Castillo, Samir N. Patel, John T. Ruzinski, Timothy R. Hughes, W. Conrad Liles, Kevin C. Kain
PLoS Pathog. 2008 May; 4(5): e1000068. Published online 2008 May 16. doi: 10.1371/journal.ppat.1000068
PMCID:
PMC2364663
Abstract Full Text PDF–831K
Gene expression profile in obesity and type 2 diabetes mellitus
Undurti N Das, Allam A Rao
Lipids Health Dis. 2007; 6: 35. Published online 2007 December 14. doi: 10.1186/1476-511X-6-35
PMCID:
PMC2242786
Abstract Full Text PDF–1018K
CAGER: classification analysis of gene expression regulation using multiple information sources
Jianhua Ruan, Weixiong Zhang
BMC Bioinformatics. 2005; 6: 114. Published online 2005 May 12. doi: 10.1186/1471-2105-6-114
PMCID:
PMC1174863
Abstract Full Text PDF–479K Supplementary Material
Towards precise classification of cancers based on robust gene functional expression profiles
Zheng Guo, Tianwen Zhang, Xia Li, Qi Wang, Jianzhen Xu, Hui Yu, Jing Zhu, Haiyun Wang, Chenguang Wang, Eric J Topol, Qing Wang, Shaoqi Rao
BMC Bioinformatics. 2005; 6: 58. Published online 2005 March 17. doi: 10.1186/1471-2105-6-58
PMCID:
PMC1274255
Abstract Full Text PDF–351K Supplementary Material
In control: systematic assessment of microarray performance
Harm van Bakel, Frank C.P. Holstege
EMBO Rep. 2004 October; 5(10): 964–969. doi: 10.1038/sj.embor.7400253
PMCID:
PMC1299153
Full Text PDF–546K Supplementary Material
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