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In silico identification and experimental validation of PmrAB targets in Salmonella typhimurium by regulatory motif detection
Kathleen Marchal, Sigrid De Keersmaecker, Pieter Monsieurs, Nadja van Boxel, Karen Lemmens, Gert Thijs, Jos Vanderleyden, Bart De Moor
Genome Biol. 2004; 5(2): R9. Published online 2004 January 29. doi: 10.1186/gb-2004-5-2-r9
PMCID:
PMC395753
Abstract Full Text PDF–473K

Is Cited by the Following 17 Articles in this Archive:

Fast, Sensitive Discovery of Conserved Genome-Wide Motifs
Nnamdi E. Ihuegbu, Gary D. Stormo, Jeremy Buhler
J Comput Biol. 2012 February; 19(2): 139–147. doi: 10.1089/cmb.2011.0249
PMCID:
PMC3272693
Free in PMC on 2013/02/01
Predicting site-specific human selective pressure using evolutionary signatures
Javad Sadri, Abdoulaye Banire Diallo, Mathieu Blanchette
Bioinformatics. 2011 July 1; 27(13): i266–i274. Published online 2011 June 14. doi: 10.1093/bioinformatics/btr241
PMCID:
PMC3117352
Abstract Full Text
Escherichia coli genome-wide promoter analysis: Identification of additional AtoC binding target elements
Eleftherios Pilalis, Aristotelis A Chatziioannou, Asterios I Grigoroudis, Christos A Panagiotidis, Fragiskos N Kolisis, Dimitrios A Kyriakidis
BMC Genomics. 2011; 12: 238. Published online 2011 May 13. doi: 10.1186/1471-2164-12-238
PMCID:
PMC3118216
Abstract Full Text PDF–2.9M Supplementary Material
Large-scale identification and translocation of type IV secretion substrates by Coxiella burnetii
Chen Chen, Simran Banga, Katja Mertens, Mary M. Weber, Ivana Gorbaslieva, Yunhao Tan, Zhao-Qing Luo, James E. Samuel
Proc Natl Acad Sci U S A. 2010 December 14; 107(50): 21755–21760. Published online 2010 November 23. doi: 10.1073/pnas.1010485107
PMCID:
PMC3003115
Abstract Full Text PDF–719K Supplementary Material
The Effect of Orthology and Coregulation on Detecting Regulatory Motifs
Valerie Storms, Marleen Claeys, Aminael Sanchez, Bart De Moor, Annemieke Verstuyf, Kathleen Marchal
PLoS One. 2010; 5(2): e8938. Published online 2010 February 3. doi: 10.1371/journal.pone.0008938
PMCID:
PMC2815771
Abstract Full Text PDF–742K Supplementary Material
Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes
Carlos J Blondel, Juan C Jiménez, Inés Contreras, Carlos A Santiviago
BMC Genomics. 2009; 10: 354. Published online 2009 August 4. doi: 10.1186/1471-2164-10-354
PMCID:
PMC2907695
Abstract Full Text PDF–1.0M Supplementary Material
Adrenaline modulates the global transcriptional profile of Salmonella revealing a role in the antimicrobial peptide and oxidative stress resistance responses
MH Karavolos, H Spencer, DM Bulmer, A Thompson, K Winzer, P Williams, JCD Hinton, CM Anjam Khan
BMC Genomics. 2008; 9: 458. Published online 2008 October 6. doi: 10.1186/1471-2164-9-458
PMCID:
PMC2576261
Abstract Full Text PDF–394K
Halobacterium salinarum NRC-1 PeptideAtlas: strategies for targeted proteomics
Phu T. Van, Amy K. Schmid, Nichole L. King, Amardeep Kaur, Min Pan, Kenia Whitehead, Tie Koide, Marc T. Facciotti, Young-Ah Goo, Eric W. Deutsch, David J. Reiss, Parag Mallick, Nitin S. Baliga
J Proteome Res. Author manuscript; available in PMC 2009 September 1.
Published in final edited form as: J Proteome Res. 2008 September; 7(9): 3755–3764. Published online 2008 July 25. doi: 10.1021/pr800031f
PMCID:
PMC2643335
Abstract Full Text PDF–585K Supplementary Material
A Pair of Highly Conserved Two-Component Systems Participates in the Regulation of the Hypervariable FIR Proteins in Different Legionella Species
Michal Feldman, Gil Segal
J Bacteriol. 2007 May; 189(9): 3382–3391. Published online 2007 March 2. doi: 10.1128/JB.01742-06
PMCID:
PMC1855887
Abstract Full Text PDF–2.0M Supplementary Material
In silico identification of NF-kappaB-regulated genes in pancreatic beta-cells
Najib Naamane, Jacques van Helden, Decio L Eizirik
BMC Bioinformatics. 2007; 8: 55. Published online 2007 February 15. doi: 10.1186/1471-2105-8-55
PMCID:
PMC1810323
Abstract Full Text PDF–598K Supplementary Material
Acid pH activation of the PmrA/PmrB two-component regulatory system of Salmonella enterica
J Christian Perez, Eduardo A Groisman
Mol Microbiol. 2007 January; 63(1): 283–293. doi: 10.1111/j.1365-2958.2006.05512.x
PMCID:
PMC1804205
Abstract Full Text PDF–428K
Functional Analysis of luxS in the Probiotic Strain Lactobacillus rhamnosus GG Reveals a Central Metabolic Role Important for Growth and Biofilm Formation
Sarah Lebeer, Sigrid C. J. De Keersmaecker, Tine L. A. Verhoeven, Abeer A. Fadda, Kathleen Marchal, Jos Vanderleyden
J Bacteriol. 2007 February; 189(3): 860–871. Published online 2006 November 10. doi: 10.1128/JB.01394-06
PMCID:
PMC1797292
Abstract Full Text PDF–413K
Inferring transcriptional modules from ChIP-chip, motif and microarray data
Karen Lemmens, Thomas Dhollander, Tijl De Bie, Pieter Monsieurs, Kristof Engelen, Bart Smets, Joris Winderickx, Bart De Moor, Kathleen Marchal
Genome Biol. 2006; 7(5): R37. Published online 2006 May 5. doi: 10.1186/gb-2006-7-5-r37
PMCID:
PMC1779513
Abstract Full Text PDF–626K Supplementary Material
More robust detection of motifs in coexpressed genes by using phylogenetic information
Pieter Monsieurs, Gert Thijs, Abeer A Fadda, Sigrid CJ De Keersmaecker, Jozef Vanderleyden, Bart De Moor, Kathleen Marchal
BMC Bioinformatics. 2006; 7: 160. Published online 2006 March 20. doi: 10.1186/1471-2105-7-160
PMCID:
PMC1525208
Abstract Full Text PDF–1.5M Supplementary Material
Role of Salmonella enterica Serovar Typhimurium Two-Component System PreA/PreB in Modulating PmrA-Regulated Gene Transcription
Massimo Merighi, Amanda Carroll-Portillo, Alecia N. Septer, Aditi Bhatiya, John S. Gunn
J Bacteriol. 2006 January; 188(1): 141–149. doi: 10.1128/JB.188.1.141-149.2006
PMCID:
PMC1317599
Abstract Full Text PDF–271K
A novel approach to identifying regulatory motifs in distantly related genomes
Ruth Van Hellemont, Pieter Monsieurs, Gert Thijs, Bart De Moor, Yves Van de Peer, Kathleen Marchal
Genome Biol. 2005; 6(13): R113. Published online 2005 December 30. doi: 10.1186/gb-2005-6-13-r113
PMCID:
PMC1414112
Abstract Full Text PDF–300K Supplementary Material
Phenotypic differences between Salmonella and Escherichia coli resulting from the disparate regulation of homologous genes
Mollie D. Winfield, Eduardo A. Groisman
Proc Natl Acad Sci U S A. 2004 December 7; 101(49): 17162–17167. Published online 2004 November 29. doi: 10.1073/pnas.0406038101
PMCID:
PMC534605
Abstract Full Text PDF–379K Supplementary Material
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