Cited by ..

An unappreciated role for RNA surveillance

R Tyler Hillman, Richard E Green, Steven E Brenner

Genome Biol. 2004; 5(2): R8. Published online 2004 February 2. doi: 10.1186/gb-2004-5-2-r8

PMCID:: PMC395752

Abstract Full Text PDF–378K Supplementary Material

Is Cited by the Following 40 Articles in this Archive:

Gene Expression: Sizing It All Up

Jenna Lynn Woody, Randy C. Shoemaker

Front Genet. 2011; 2: 70. Published online 2011 October 17. doi: 10.3389/fgene.2011.00070

PMCID:: PMC3268623

Abstract Full Text PDF–245K

Expression of a Constitutively Active Calcineurin Encoded by an Intron-Retaining mRNA in Follicular Keratinocytes

Atsushi Fujimura, Hiroyuki Michiue, Tei-ichi Nishiki, Iori Ohmori, Fan-Yan Wei, Hideki Matsui, Kazuhito Tomizawa

PLoS One. 2011; 6(3): e17685. Published online 2011 March 14. doi: 10.1371/journal.pone.0017685

PMCID:: PMC3056713

Abstract Full Text PDF–1.5M Supplementary Material

Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay

Nicholas J McGlincy, Lit-Yeen Tan, Nicodeme Paul, Mihaela Zavolan, Kathryn S Lilley, Christopher WJ Smith

BMC Genomics. 2010; 11: 565. Published online 2010 October 14. doi: 10.1186/1471-2164-11-565

PMCID:: PMC3091714

Abstract Full Text PDF–1.0M Supplementary Material

Sam68 regulates EMT through alternative splicing–activated nonsense-mediated mRNA decay of the SF2/ASF proto-oncogene

Cristina Valacca, Serena Bonomi, Emanuele Buratti, Simona Pedrotti, Francisco Ernesto Baralle, Claudio Sette, Claudia Ghigna, Giuseppe Biamonti

J Cell Biol. 2010 October 4; 191(1): 87–99. doi: 10.1083/jcb.201001073

PMCID:: PMC2953442

Abstract Full Text PDF–2.5M Supplementary Material

Characteristics of Transposable Element Exonization within Human and Mouse

Noa Sela, Britta Mersch, Agnes Hotz-Wagenblatt, Gil Ast

PLoS One. 2010; 5(6): e10907. Published online 2010 June 1. doi: 10.1371/journal.pone.0010907

PMCID:: PMC2879366

Abstract Full Text PDF–521K Supplementary Material

Nonsense mediated RNA decay regulation by cellular stress; implications for tumorigenesis

Lawrence B. Gardner

Mol Cancer Res. Author manuscript; available in PMC 2011 March 1.

Published in final edited form as: Mol Cancer Res. 2010 March; 8(3): 295–308. Published online 2010 February 23. doi: 10.1158/1541-7786.MCR-09-0502

PMCID:: PMC2841721

Abstract Full Text PDF–473K

Cdc2-like Kinase 2 is an Insulin Regulated Suppressor of Hepatic Gluconeogenesis

Joseph T. Rodgers, Wilhelm Haas, Steven P. Gygi, Pere Puigserver.

Cell Metab. Author manuscript; available in PMC 2011 January 1.

Published in final edited form as: Cell Metab. 2010 January; 11(1): 23–34. doi: 10.1016/j.cmet.2009.11.006

PMCID:: PMC2807620

Abstract Full Text PDF–1.4M Supplementary Material

Splicing Factor Arginine/Serine-rich 17A (SFRS17A) Is an A-kinase Anchoring Protein That Targets Protein Kinase A to Splicing Factor Compartments

Elisabeth Jarnæss, Anne Jorunn Stokka, Anne-Katrine Kvissel, Bjørn S. Skålhegg, Knut Martin Torgersen, John D. Scott, Cathrine R. Carlson, Kjetil Taskén

J Biol Chem. 2009 December 11; 284(50): 35154–35164. Published online 2009 October 19. doi: 10.1074/jbc.M109.056465

PMCID:: PMC2787376

Abstract Full Text

Structural implication of splicing stochastics

Eugene Melamud, John Moult

Nucleic Acids Res. 2009 August; 37(14): 4862–4872. Published online 2009 August. doi: 10.1093/nar/gkp444

PMCID:: PMC2724273

Abstract Full Text PDF–1.6M

Age and Diet Affect Gene Expression Profile in Canine Skeletal Muscle

Ingmar S. Middelbos, Brittany M. Vester, Lisa K. Karr-Lilienthal, Lawrence B. Schook, Kelly S. Swanson

PLoS ONE. 2009; 4(2): e4481. Published online 2009 February 16. doi: 10.1371/journal.pone.0004481

PMCID:: PMC2637985

Abstract Full Text PDF–210K Supplementary Material

Genome-wide analysis of chimpanzee genes with premature termination codons

Anna Wetterbom, Ulf Gyllensten, Lucia Cavelier, Tomas F Bergström

BMC Genomics. 2009; 10: 56. Published online 2009 January 29. doi: 10.1186/1471-2164-10-56

PMCID:: PMC2640416

Abstract Full Text PDF–784K Supplementary Material

Width of Gene Expression Profile Drives Alternative Splicing

Daniel Wegmann, Isabelle Dupanloup, Laurent Excoffier

PLoS ONE. 2008; 3(10): e3587. Published online 2008 October 31. doi: 10.1371/journal.pone.0003587

PMCID:: PMC2575406

Abstract Full Text PDF–653K Supplementary Material

Complex organisation and structure of the ghrelin antisense strand gene GHRLOS, a candidate non-coding RNA gene

Inge Seim, Shea L Carter, Adrian C Herington, Lisa K Chopin

BMC Mol Biol. 2008; 9: 95. Published online 2008 October 28. doi: 10.1186/1471-2199-9-95

PMCID:: PMC2621237

Abstract Full Text PDF–2.4M Supplementary Material

Widespread Impact of Nonsense-Mediated mRNA Decay on the Yeast Intronome

Shakir Sayani, Michael Janis, Chrissie Young Lee, Isabelle Toesca, Guillaume F. Chanfreau

Mol Cell. Author manuscript; available in PMC 2009 August 8.

Published in final edited form as: Mol Cell. 2008 August 8; 31(3): 360–370. doi: 10.1016/j.molcel.2008.07.005

PMCID:: PMC2600495

Abstract Full Text PDF–2.3M Supplementary Material

Trans-regulation of the expression of the transcription factor MtHAP2-1 by a uORF controls root nodule development

Jean Philippe Combier, Françoise de Billy, Pascal Gamas, Andreas Niebel, Susana Rivas

Genes Dev. 2008 June 1; 22(11): 1549–1559. doi: 10.1101/gad.461808

PMCID:: PMC2418590

Abstract Full Text PDF–664K

Cytoplasmic BK_Ca channel intron-containing mRNAs contribute to the intrinsic excitability of hippocampal neurons

Thomas J. Bell, Kevin Y. Miyashiro, Jai-Yoon Sul, Ronald McCullough, Peter T. Buckley, Jeanine Jochems, David F. Meaney, Phil Haydon, Charles Cantor, Thomas D. Parsons, James Eberwine

Proc Natl Acad Sci U S A. 2008 February 12; 105(6): 1901–1906. Published online 2008 February 4. doi: 10.1073/pnas.0711796105

PMCID:: PMC2538856

Abstract Full Text PDF–984K Supplementary Material

Crossregulation and Functional Redundancy between the Splicing Regulator PTB and Its Paralogs nPTB and ROD1

Rachel Spellman, Miriam Llorian, Christopher W.J. Smith

Mol Cell. 2007 August 3; 27(3): 420–434. doi: 10.1016/j.molcel.2007.06.016

PMCID:: PMC1940037

Abstract Full Text PDF–1.7M Supplementary Material

Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs)

Maren Krull, Mirjan Petrusma, Wojciech Makalowski, Jürgen Brosius, Jürgen Schmitz

Genome Res. 2007 August; 17(8): 1139–1145. doi: 10.1101/gr.6320607

PMCID:: PMC1933517

Abstract Full Text PDF–465K

Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome

Noa Sela, Britta Mersch, Nurit Gal-Mark, Galit Lev-Maor, Agnes Hotz-Wagenblatt, Gil Ast

Genome Biol. 2007; 8(6): R127. Published online 2007 June 27. doi: 10.1186/gb-2007-8-6-r127

PMCID:: PMC2394776

Abstract Full Text PDF–776K Supplementary Material

The abundance of RNPS1, a protein component of the exon junction complex, can determine the variability in efficiency of the Nonsense Mediated Decay pathway

Marcelo H. Viegas, Niels H. Gehring, Stephen Breit, Matthias W. Hentze, Andreas E. Kulozik

Nucleic Acids Res. 2007 July; 35(13): 4542–4551. Published online 2007 June 22. doi: 10.1093/nar/gkm461

PMCID:: PMC1935013

Abstract Full Text PDF–3.0M Supplementary Material

A new advance in alternative splicing databases: from catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants

Pierre de la Grange, Martin Dutertre, Margot Correa, Didier Auboeuf

BMC Bioinformatics. 2007; 8: 180. Published online 2007 June 4. doi: 10.1186/1471-2105-8-180

PMCID:: PMC1904244

Abstract Full Text PDF–1.7M

Staufen1 regulates diverse classes of mammalian transcripts

Yoon Ki Kim, Luc Furic, Marc Parisien, François Major, Luc DesGroseillers, Lynne E Maquat

EMBO J. 2007 June 6; 26(11): 2670–2681. Published online 2007 May 17. doi: 10.1038/sj.emboj.7601712

PMCID:: PMC1888674

Abstract Full Text PDF–367K Supplementary Material

The (In)dependence of Alternative Splicing and Gene Duplication

David Talavera, Christine Vogel, Modesto Orozco, Sarah A Teichmann, Xavier de la Cruz

PLoS Comput Biol. 2007 March; 3(3): e33. Published online 2007 March 2. doi: 10.1371/journal.pcbi.0030033

PMCID:: PMC1808492

Abstract Full Text PDF–703K Supplementary Material

The nicotinic acetylcholine receptor gene family of the honey bee, Apis mellifera

Andrew K. Jones, Valerie Raymond-Delpech, Steeve H. Thany, Monique Gauthier, David B. Sattelle

Genome Res. 2006 November; 16(11): 1422–1430. doi: 10.1101/gr.4549206

PMCID:: PMC1626644

Abstract Full Text PDF–1.3M

Highly variable mRNA expression and splicing of L-type voltage-dependent calcium channel alpha subunit 1C in human heart tissues

Danxin Wang, Audrey C. Papp, Philip F. Binkley, Julie A. Johnson, Wolfgang Sadée

Pharmacogenet Genomics. Author manuscript; available in PMC 2009 June 1.

Published in final edited form as: Pharmacogenet Genomics. 2006 October; 16(10): 735–745. doi: 10.1097/01.fpc.0000230119.34205.8a

PMCID:: PMC2688811

Abstract Full Text PDF–566K

XE7: A novel splicing factor that interacts with ASF/SF2 and ZNF265

A. Helena Mangs, Helen J.L. Speirs, Christine Goy, David J. Adams, M. Andrea Markus, Brian J. Morris

Nucleic Acids Res. 2006 October; 34(17): 4976–4986. Published online 2006 September 18. doi: 10.1093/nar/gkl660

PMCID:: PMC1635291

Abstract Full Text PDF–846K

The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate?

Eugene V Koonin

Biol Direct. 2006; 1: 22. Published online 2006 August 14. doi: 10.1186/1745-6150-1-22

PMCID:: PMC1570339

Abstract Full Text PDF–474K

Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases

Alistair RR Forrest, Darrin F Taylor, Mark L Crowe, Alistair M Chalk, Nic J Waddell, Gabriel Kolle, Geoffrey J Faulkner, Rimantas Kodzius, Shintaro Katayama, Christine Wells, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Sean M Grimmond

Genome Biol. 2006; 7(1): R5. Published online 2006 January 26. doi: 10.1186/gb-2006-7-1-r5