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An unappreciated role for RNA surveillance
R Tyler Hillman, Richard E Green, Steven E Brenner
Genome Biol. 2004; 5(2): R8. Published online 2004 February 2. doi: 10.1186/gb-2004-5-2-r8
PMCID:
PMC395752
Abstract Full Text PDF–378K Supplementary Material

Is Cited by the Following 43 Articles in this Archive:

The Function of Introns
Michal Chorev, Liran Carmel
Front Genet. 2012; 3: 55. Prepublished online 2012 March 5. Published online 2012 April 13. doi: 10.3389/fgene.2012.00055
PMCID:
PMC3325483
Abstract Full Text PDF–1.2M
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis
Maria Kalyna, Craig G. Simpson, Naeem H. Syed, Dominika Lewandowska, Yamile Marquez, Branislav Kusenda, Jacqueline Marshall, John Fuller, Linda Cardle, Jim McNicol, Huy Q. Dinh, Andrea Barta, John W. S. Brown
Nucleic Acids Res. 2012 March; 40(6): 2454–2469. Published online 2011 November 29. doi: 10.1093/nar/gkr932
PMCID:
PMC3315328
Abstract Full Text PDF–647K Supplementary Material
Gene Expression: Sizing It All Up
Jenna Lynn Woody, Randy C. Shoemaker
Front Genet. 2011; 2: 70. Published online 2011 October 17. doi: 10.3389/fgene.2011.00070
PMCID:
PMC3268623
Abstract Full Text PDF–245K
Drosophila Upf1 and Upf2 loss of function inhibits cell growth and causes animal death in a Upf3-independent manner
Paul Avery, Marta Vicente-Crespo, Deepthy Francis, Oxana Nashchekina, Claudio R. Alonso, Isabel M. Palacios
RNA. 2011 April; 17(4): 624–638. doi: 10.1261/rna.2404211
PMCID:
PMC3062174
Abstract Full Text PDF–1024K
Expression of a Constitutively Active Calcineurin Encoded by an Intron-Retaining mRNA in Follicular Keratinocytes
Atsushi Fujimura, Hiroyuki Michiue, Tei-ichi Nishiki, Iori Ohmori, Fan-Yan Wei, Hideki Matsui, Kazuhito Tomizawa
PLoS One. 2011; 6(3): e17685. Published online 2011 March 14. doi: 10.1371/journal.pone.0017685
PMCID:
PMC3056713
Abstract Full Text PDF–1.5M Supplementary Material
Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay
Nicholas J McGlincy, Lit-Yeen Tan, Nicodeme Paul, Mihaela Zavolan, Kathryn S Lilley, Christopher WJ Smith
BMC Genomics. 2010; 11: 565. Published online 2010 October 14. doi: 10.1186/1471-2164-11-565
PMCID:
PMC3091714
Abstract Full Text PDF–1.0M Supplementary Material
Sam68 regulates EMT through alternative splicing–activated nonsense-mediated mRNA decay of the SF2/ASF proto-oncogene
Cristina Valacca, Serena Bonomi, Emanuele Buratti, Simona Pedrotti, Francisco Ernesto Baralle, Claudio Sette, Claudia Ghigna, Giuseppe Biamonti
J Cell Biol. 2010 October 4; 191(1): 87–99. doi: 10.1083/jcb.201001073
PMCID:
PMC2953442
Abstract Full Text PDF–2.5M Supplementary Material
Characteristics of Transposable Element Exonization within Human and Mouse
Noa Sela, Britta Mersch, Agnes Hotz-Wagenblatt, Gil Ast
PLoS One. 2010; 5(6): e10907. Published online 2010 June 1. doi: 10.1371/journal.pone.0010907
PMCID:
PMC2879366
Abstract Full Text PDF–521K Supplementary Material
Nonsense mediated RNA decay regulation by cellular stress; implications for tumorigenesis
Lawrence B. Gardner
Mol Cancer Res. Author manuscript; available in PMC 2011 March 1.
Published in final edited form as: Mol Cancer Res. 2010 March; 8(3): 295–308. Published online 2010 February 23. doi: 10.1158/1541-7786.MCR-09-0502
PMCID:
PMC2841721
Abstract Full Text PDF–473K
Cdc2-like Kinase 2 is an Insulin Regulated Suppressor of Hepatic Gluconeogenesis
Joseph T. Rodgers, Wilhelm Haas, Steven P. Gygi, Pere Puigserver.
Cell Metab. Author manuscript; available in PMC 2011 January 1.
Published in final edited form as: Cell Metab. 2010 January; 11(1): 23–34. doi: 10.1016/j.cmet.2009.11.006
PMCID:
PMC2807620
Abstract Full Text PDF–1.4M Supplementary Material
Splicing Factor Arginine/Serine-rich 17A (SFRS17A) Is an A-kinase Anchoring Protein That Targets Protein Kinase A to Splicing Factor Compartments
Elisabeth Jarnæss, Anne Jorunn Stokka, Anne-Katrine Kvissel, Bjørn S. Skålhegg, Knut Martin Torgersen, John D. Scott, Cathrine R. Carlson, Kjetil Taskén
J Biol Chem. 2009 December 11; 284(50): 35154–35164. Published online 2009 October 19. doi: 10.1074/jbc.M109.056465
PMCID:
PMC2787376
Abstract Full Text
Structural implication of splicing stochastics
Eugene Melamud, John Moult
Nucleic Acids Res. 2009 August; 37(14): 4862–4872. Published online 2009 August. doi: 10.1093/nar/gkp444
PMCID:
PMC2724273
Abstract Full Text PDF–1.6M
Age and Diet Affect Gene Expression Profile in Canine Skeletal Muscle
Ingmar S. Middelbos, Brittany M. Vester, Lisa K. Karr-Lilienthal, Lawrence B. Schook, Kelly S. Swanson
PLoS ONE. 2009; 4(2): e4481. Published online 2009 February 16. doi: 10.1371/journal.pone.0004481
PMCID:
PMC2637985
Abstract Full Text PDF–210K Supplementary Material
Genome-wide analysis of chimpanzee genes with premature termination codons
Anna Wetterbom, Ulf Gyllensten, Lucia Cavelier, Tomas F Bergström
BMC Genomics. 2009; 10: 56. Published online 2009 January 29. doi: 10.1186/1471-2164-10-56
PMCID:
PMC2640416
Abstract Full Text PDF–784K Supplementary Material
Width of Gene Expression Profile Drives Alternative Splicing
Daniel Wegmann, Isabelle Dupanloup, Laurent Excoffier
PLoS ONE. 2008; 3(10): e3587. Published online 2008 October 31. doi: 10.1371/journal.pone.0003587
PMCID:
PMC2575406
Abstract Full Text PDF–653K Supplementary Material
Complex organisation and structure of the ghrelin antisense strand gene GHRLOS, a candidate non-coding RNA gene
Inge Seim, Shea L Carter, Adrian C Herington, Lisa K Chopin
BMC Mol Biol. 2008; 9: 95. Published online 2008 October 28. doi: 10.1186/1471-2199-9-95
PMCID:
PMC2621237
Abstract Full Text PDF–2.4M Supplementary Material
Widespread Impact of Nonsense-Mediated mRNA Decay on the Yeast Intronome
Shakir Sayani, Michael Janis, Chrissie Young Lee, Isabelle Toesca, Guillaume F. Chanfreau
Mol Cell. Author manuscript; available in PMC 2009 August 8.
Published in final edited form as: Mol Cell. 2008 August 8; 31(3): 360–370. doi: 10.1016/j.molcel.2008.07.005
PMCID:
PMC2600495
Abstract Full Text PDF–2.3M Supplementary Material
Trans-regulation of the expression of the transcription factor MtHAP2-1 by a uORF controls root nodule development
Jean Philippe Combier, Françoise de Billy, Pascal Gamas, Andreas Niebel, Susana Rivas
Genes Dev. 2008 June 1; 22(11): 1549–1559. doi: 10.1101/gad.461808
PMCID:
PMC2418590
Abstract Full Text PDF–664K
Cytoplasmic BKCa channel intron-containing mRNAs contribute to the intrinsic excitability of hippocampal neurons
Thomas J. Bell, Kevin Y. Miyashiro, Jai-Yoon Sul, Ronald McCullough, Peter T. Buckley, Jeanine Jochems, David F. Meaney, Phil Haydon, Charles Cantor, Thomas D. Parsons, James Eberwine
Proc Natl Acad Sci U S A. 2008 February 12; 105(6): 1901–1906. Published online 2008 February 4. doi: 10.1073/pnas.0711796105
PMCID:
PMC2538856
Abstract Full Text PDF–984K Supplementary Material
Crossregulation and Functional Redundancy between the Splicing Regulator PTB and Its Paralogs nPTB and ROD1
Rachel Spellman, Miriam Llorian, Christopher W.J. Smith
Mol Cell. 2007 August 3; 27(3): 420–434. doi: 10.1016/j.molcel.2007.06.016
PMCID:
PMC1940037
Abstract Full Text Supplementary Material
Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs)
Maren Krull, Mirjan Petrusma, Wojciech Makalowski, Jürgen Brosius, Jürgen Schmitz
Genome Res. 2007 August; 17(8): 1139–1145. doi: 10.1101/gr.6320607
PMCID:
PMC1933517
Abstract Full Text PDF–465K
Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome
Noa Sela, Britta Mersch, Nurit Gal-Mark, Galit Lev-Maor, Agnes Hotz-Wagenblatt, Gil Ast
Genome Biol. 2007; 8(6): R127. Published online 2007 June 27. doi: 10.1186/gb-2007-8-6-r127
PMCID:
PMC2394776
Abstract Full Text PDF–776K Supplementary Material
The abundance of RNPS1, a protein component of the exon junction complex, can determine the variability in efficiency of the Nonsense Mediated Decay pathway
Marcelo H. Viegas, Niels H. Gehring, Stephen Breit, Matthias W. Hentze, Andreas E. Kulozik
Nucleic Acids Res. 2007 July; 35(13): 4542–4551. Published online 2007 June 22. doi: 10.1093/nar/gkm461
PMCID:
PMC1935013
Abstract Full Text PDF–3.0M Supplementary Material
A new advance in alternative splicing databases: from catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants
Pierre de la Grange, Martin Dutertre, Margot Correa, Didier Auboeuf
BMC Bioinformatics. 2007; 8: 180. Published online 2007 June 4. doi: 10.1186/1471-2105-8-180
PMCID:
PMC1904244
Abstract Full Text PDF–1.7M
Staufen1 regulates diverse classes of mammalian transcripts
Yoon Ki Kim, Luc Furic, Marc Parisien, François Major, Luc DesGroseillers, Lynne E Maquat
EMBO J. 2007 June 6; 26(11): 2670–2681. Published online 2007 May 17. doi: 10.1038/sj.emboj.7601712
PMCID:
PMC1888674
Abstract Full Text PDF–367K Supplementary Material
The (In)dependence of Alternative Splicing and Gene Duplication
David Talavera, Christine Vogel, Modesto Orozco, Sarah A Teichmann, Xavier de la Cruz
PLoS Comput Biol. 2007 March; 3(3): e33. Published online 2007 March 2. doi: 10.1371/journal.pcbi.0030033
PMCID:
PMC1808492
Abstract Full Text PDF–703K Supplementary Material
The nicotinic acetylcholine receptor gene family of the honey bee, Apis mellifera
Andrew K. Jones, Valerie Raymond-Delpech, Steeve H. Thany, Monique Gauthier, David B. Sattelle
Genome Res. 2006 November; 16(11): 1422–1430. doi: 10.1101/gr.4549206
PMCID:
PMC1626644
Abstract Full Text PDF–1.3M
Highly variable mRNA expression and splicing of L-type voltage-dependent calcium channel alpha subunit 1C in human heart tissues
Danxin Wang, Audrey C. Papp, Philip F. Binkley, Julie A. Johnson, Wolfgang Sadée
Pharmacogenet Genomics. Author manuscript; available in PMC 2009 June 1.
Published in final edited form as: Pharmacogenet Genomics. 2006 October; 16(10): 735–745. doi: 10.1097/01.fpc.0000230119.34205.8a
PMCID:
PMC2688811
Abstract Full Text PDF–566K
XE7: A novel splicing factor that interacts with ASF/SF2 and ZNF265
A. Helena Mangs, Helen J.L. Speirs, Christine Goy, David J. Adams, M. Andrea Markus, Brian J. Morris
Nucleic Acids Res. 2006 October; 34(17): 4976–4986. Published online 2006 September 18. doi: 10.1093/nar/gkl660
PMCID:
PMC1635291
Abstract Full Text PDF–846K
The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate?
Eugene V Koonin
Biol Direct. 2006; 1: 22. Published online 2006 August 14. doi: 10.1186/1745-6150-1-22
PMCID:
PMC1570339
Abstract Full Text PDF–474K
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